Wall clock time and date at job start Mon Mar 30 2020 07:42:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.47001 * 2 1 4 4 H 1.09003 * 109.46866 * 304.25799 * 3 2 1 5 5 C 1.50701 * 109.47017 * 184.26150 * 3 2 1 6 6 H 1.07996 * 119.99817 * 239.99783 * 5 3 2 7 7 C 1.37872 * 119.99975 * 59.72202 * 5 3 2 8 8 N 1.31515 * 120.00565 * 0.27443 * 7 5 3 9 9 Si 1.86807 * 119.99918 * 180.27493 * 7 5 3 10 10 H 1.48509 * 109.46882 * 59.99868 * 9 7 5 11 11 H 1.48496 * 109.47266 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.46831 * 300.00059 * 9 7 5 13 13 N 1.46896 * 109.47352 * 64.25688 * 3 2 1 14 14 C 1.46897 * 111.00149 * 206.20282 * 13 3 2 15 15 C 1.52999 * 109.47390 * 174.54006 * 14 13 3 16 16 H 1.09002 * 109.53992 * 305.18136 * 15 14 13 17 17 C 1.53182 * 109.54189 * 65.44124 * 15 14 13 18 18 C 1.53099 * 109.16023 * 176.84751 * 17 15 14 19 19 O 1.42897 * 109.41668 * 302.39690 * 18 17 15 20 20 C 1.42901 * 114.10204 * 61.15356 * 19 18 17 21 21 H 1.09004 * 109.47767 * 58.82913 * 20 19 18 22 22 C 1.53004 * 109.49317 * 178.85359 * 20 19 18 23 23 C 1.53000 * 109.46821 * 294.95389 * 22 20 19 24 24 C 1.53092 * 109.41741 * 298.84698 * 20 19 18 25 25 H 1.09002 * 109.47549 * 294.87098 * 1 2 3 26 26 H 1.09003 * 109.47007 * 54.87385 * 1 2 3 27 27 H 1.09004 * 109.47344 * 174.87031 * 1 2 3 28 28 H 1.08998 * 109.47604 * 239.99462 * 2 1 3 29 29 H 1.09004 * 109.46861 * 119.99510 * 2 1 3 30 30 H 0.96998 * 120.00452 * 180.02562 * 8 7 5 31 31 H 1.00897 * 110.99812 * 82.24773 * 13 3 2 32 32 H 1.09002 * 109.47320 * 294.53801 * 14 13 3 33 33 H 1.09007 * 109.47239 * 54.53898 * 14 13 3 34 34 H 1.08996 * 109.52484 * 296.75636 * 17 15 14 35 35 H 1.09003 * 109.51960 * 56.94673 * 17 15 14 36 36 H 1.08994 * 109.47631 * 182.40801 * 18 17 15 37 37 H 1.09003 * 109.48406 * 62.38052 * 18 17 15 38 38 H 1.08997 * 109.46868 * 54.95302 * 22 20 19 39 39 H 1.08993 * 109.47180 * 174.95026 * 22 20 19 40 40 H 1.08997 * 109.47435 * 60.00332 * 23 22 20 41 41 H 1.09002 * 109.46620 * 180.02562 * 23 22 20 42 42 H 1.08997 * 109.47329 * 299.99631 * 23 22 20 43 43 H 1.09003 * 109.51948 * 297.70192 * 24 20 19 44 44 H 1.09000 * 109.52205 * 177.51118 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6156 1.9779 -0.8494 5 6 3.5433 1.4439 -0.1056 6 1 4.1390 1.8918 0.6759 7 6 4.1582 0.8682 -1.1971 8 7 3.4327 0.3226 -2.1488 9 14 6.0219 0.8630 -1.3242 10 1 6.5951 0.1347 -0.1638 11 1 6.4304 0.1883 -2.5824 12 1 6.5217 2.2614 -1.3270 13 7 1.6361 2.1048 1.2475 14 6 1.5317 3.5582 1.0621 15 6 0.9798 4.1969 2.3382 16 1 0.0356 3.7220 2.6046 17 6 1.9863 4.0156 3.4786 18 6 1.4616 4.7253 4.7295 19 8 1.2428 6.1065 4.4355 20 6 0.2758 6.3385 3.4092 21 1 -0.6784 5.9012 3.7032 22 6 0.1040 7.8445 3.2008 23 6 -0.4906 8.4697 4.4643 24 6 0.7529 5.6937 2.1053 25 1 -0.3634 0.4322 0.9323 26 1 -0.3633 0.5913 -0.8405 27 1 -0.3634 -1.0236 -0.0919 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 3.8654 -0.0827 -2.9165 31 1 2.2720 1.8807 1.9981 32 1 2.5183 3.9690 0.8477 33 1 0.8608 3.7712 0.2297 34 1 2.1120 2.9534 3.6881 35 1 2.9450 4.4469 3.1902 36 1 2.1937 4.6359 5.5320 37 1 0.5230 4.2668 5.0409 38 1 1.0745 8.2957 2.9942 39 1 -0.5651 8.0207 2.3587 40 1 0.1786 8.2936 5.3064 41 1 -0.6134 9.5425 4.3155 42 1 -1.4611 8.0185 4.6708 43 1 1.6866 6.1589 1.7893 44 1 -0.0036 5.8316 1.3327 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309997646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:39 Heat of formation + Delta-G solvation = -98.555883 kcal Electronic energy + Delta-G solvation = -19844.176047 eV Core-core repulsion = 16987.257898 eV Total energy + Delta-G solvation = -2856.918148 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.60384 -38.15581 -35.78138 -34.83544 -33.82033 -32.24719 -30.73041 -28.81108 -26.92610 -24.88286 -24.35606 -23.59393 -21.73947 -21.40985 -20.76338 -18.74648 -17.33755 -16.91863 -16.77269 -16.40143 -15.64379 -15.50158 -14.97583 -14.73277 -14.69529 -14.52110 -14.17370 -13.96364 -13.42371 -13.33308 -13.08116 -12.98097 -12.67516 -12.64507 -12.53973 -12.43750 -12.07160 -11.98636 -11.94600 -11.69182 -11.52867 -11.48078 -11.27666 -11.05536 -10.95973 -10.48290 -10.28288 -9.05687 -8.06868 -6.29551 1.37478 1.37923 1.45614 2.38373 2.90613 3.12290 3.50412 3.81251 3.97436 4.02646 4.05239 4.25270 4.28083 4.44993 4.53743 4.55636 4.61189 4.63597 4.75555 4.77191 4.85316 4.90614 4.93550 4.96227 5.04870 5.07248 5.14595 5.16547 5.20533 5.25300 5.30277 5.41567 5.48044 5.48715 5.52369 5.63787 5.76715 6.10077 6.19603 6.37052 6.37965 6.81108 7.00985 7.42036 8.89328 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025549 B = 0.004621 C = 0.004287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.657797 B = 6058.276309 C = 6529.429131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.102 4.102 3 C 0.221 3.779 4 H -0.004 1.004 5 C -0.562 4.562 6 H 0.048 0.952 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.949 3.051 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.277 1.277 13 N -0.677 5.677 14 C 0.079 3.921 15 C -0.075 4.075 16 H 0.078 0.922 17 C -0.147 4.147 18 C 0.067 3.933 19 O -0.395 6.395 20 C 0.092 3.908 21 H 0.064 0.936 22 C -0.116 4.116 23 C -0.146 4.146 24 C -0.141 4.141 25 H 0.058 0.942 26 H 0.029 0.971 27 H 0.044 0.956 28 H 0.060 0.940 29 H 0.028 0.972 30 H 0.262 0.738 31 H 0.329 0.671 32 H 0.004 0.996 33 H 0.049 0.951 34 H 0.075 0.925 35 H 0.052 0.948 36 H 0.103 0.897 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.089 0.911 40 H 0.049 0.951 41 H 0.064 0.936 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.236 11.016 11.709 17.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 C 0.112 3.888 4 H 0.014 0.986 5 C -0.601 4.601 6 H 0.066 0.934 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.775 3.225 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.202 1.202 13 N -0.306 5.306 14 C -0.051 4.051 15 C -0.094 4.094 16 H 0.096 0.904 17 C -0.185 4.185 18 C -0.010 4.010 19 O -0.314 6.314 20 C 0.035 3.965 21 H 0.082 0.918 22 C -0.154 4.154 23 C -0.203 4.203 24 C -0.179 4.179 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.063 0.937 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.072 0.928 31 H 0.146 0.854 32 H 0.022 0.978 33 H 0.068 0.932 34 H 0.094 0.906 35 H 0.071 0.929 36 H 0.121 0.879 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -7.811 10.959 11.513 17.711 hybrid contribution 2.129 -0.281 -0.863 2.315 sum -5.681 10.678 10.650 16.116 Atomic orbital electron populations 1.21541 0.96334 0.99535 1.00616 1.21354 0.94438 0.98274 1.00009 1.18932 0.91443 0.91588 0.86847 0.98588 1.22139 0.94100 1.37836 1.06006 0.93410 1.25655 1.02143 0.94728 0.95405 1.69994 1.36526 1.38388 1.10005 0.85757 0.81061 0.78138 0.77541 1.19613 1.20747 1.20213 1.60855 1.54310 1.07399 1.08077 1.21763 0.97447 0.88879 0.97058 1.21120 0.99143 0.95015 0.94140 0.90358 1.22191 0.98684 1.01465 0.96164 1.22598 1.00890 0.81246 0.96252 1.87869 1.61862 1.25290 1.56409 1.22210 0.91138 0.96625 0.86546 0.91835 1.21580 1.01915 0.92302 0.99569 1.21686 1.00637 1.00718 0.97258 1.22222 1.02120 0.94833 0.98737 0.92323 0.95197 0.93694 0.92164 0.95308 0.92840 0.85417 0.97809 0.93218 0.90620 0.92948 0.87852 0.92235 0.91956 0.89301 0.93142 0.91733 0.92383 0.92378 0.90163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.97 9.73 71.98 0.70 -4.27 16 2 C -0.10 -4.93 5.44 30.60 0.17 -4.77 16 3 C 0.22 11.11 1.99 44.17 0.09 11.20 16 4 H 0.00 -0.22 7.69 -2.39 -0.02 -0.24 16 5 C -0.56 -30.75 8.49 25.60 0.22 -30.54 16 6 H 0.05 2.59 7.72 -2.91 -0.02 2.57 16 7 C 0.02 1.15 5.29 84.65 0.45 1.60 16 8 N -0.91 -52.36 11.29 21.45 0.24 -52.12 16 9 Si 0.95 43.66 29.54 68.60 2.03 45.69 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 13 N -0.68 -28.03 5.72 -495.44 -2.83 -30.86 16 14 C 0.08 2.93 4.97 86.30 0.43 3.36 16 15 C -0.08 -2.16 2.48 -10.68 -0.03 -2.18 16 16 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 17 C -0.15 -3.95 5.12 30.69 0.16 -3.80 16 18 C 0.07 1.50 6.84 72.02 0.49 1.99 16 19 O -0.39 -9.83 9.94 -148.98 -1.48 -11.31 16 20 C 0.09 2.02 2.64 30.63 0.08 2.10 16 21 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 22 C -0.12 -2.13 5.64 30.60 0.17 -1.96 16 23 C -0.15 -2.36 9.81 71.98 0.71 -1.66 16 24 C -0.14 -3.51 4.70 30.68 0.14 -3.37 16 25 H 0.06 2.21 7.88 -2.39 -0.02 2.19 16 26 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 28 H 0.06 3.28 5.96 -2.39 -0.01 3.27 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.33 13.38 6.95 -89.70 -0.62 12.76 16 32 H 0.00 0.15 8.13 -2.39 -0.02 0.13 16 33 H 0.05 1.93 7.92 -2.38 -0.02 1.91 16 34 H 0.08 2.05 6.98 -2.39 -0.02 2.04 16 35 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 39 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.05 0.93 7.82 -2.39 -0.02 0.91 16 41 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.08 1.84 8.14 -2.39 -0.02 1.82 16 Total: -1.00 -59.06 340.31 2.04 -57.02 By element: Atomic # 1 Polarization: 23.55 SS G_CDS: 0.31 Total: 23.86 kcal Atomic # 6 Polarization: -36.06 SS G_CDS: 3.78 Total: -32.28 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -2.59 Total: -82.97 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: -1.48 Total: -11.31 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Total: -59.06 2.04 -57.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309997646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.533 kcal (2) G-P(sol) polarization free energy of solvation -59.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds