Wall clock time and date at job start Mon Mar 30 2020 07:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 H 1.08998 * 109.47164 * 177.87650 * 3 2 1 5 5 C 1.50701 * 109.47019 * 57.87613 * 3 2 1 6 6 H 1.08007 * 120.00106 * 240.00198 * 5 3 2 7 7 C 1.37882 * 120.00037 * 59.99866 * 5 3 2 8 8 N 1.31513 * 119.99597 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99891 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47299 * 60.00363 * 9 7 5 11 11 H 1.48500 * 109.46883 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47344 * 300.00022 * 9 7 5 13 13 N 1.46906 * 109.46999 * 297.87830 * 3 2 1 14 14 C 1.46896 * 110.99511 * 274.02614 * 13 3 2 15 15 C 1.53004 * 109.46599 * 175.34969 * 14 13 3 16 16 H 1.08998 * 109.54067 * 304.81715 * 15 14 13 17 17 C 1.53173 * 109.54588 * 64.99833 * 15 14 13 18 18 C 1.53094 * 109.16495 * 62.88671 * 17 15 14 19 19 O 1.42904 * 109.41559 * 57.60631 * 18 17 15 20 20 C 1.42901 * 114.09869 * 298.84505 * 19 18 17 21 21 H 1.08995 * 109.48125 * 301.17441 * 20 19 18 22 22 C 1.52999 * 109.48224 * 181.14816 * 20 19 18 23 23 C 1.53000 * 109.46842 * 64.99914 * 22 20 19 24 24 C 1.53091 * 109.41459 * 61.15784 * 20 19 18 25 25 H 1.09001 * 109.47169 * 294.50189 * 1 2 3 26 26 H 1.08992 * 109.46849 * 54.50641 * 1 2 3 27 27 H 1.09001 * 109.46594 * 174.50424 * 1 2 3 28 28 H 1.08997 * 109.47099 * 120.00300 * 2 1 3 29 29 H 1.09003 * 109.46918 * 240.00200 * 2 1 3 30 30 H 0.97005 * 119.99614 * 179.97438 * 8 7 5 31 31 H 1.00897 * 110.99560 * 150.07326 * 13 3 2 32 32 H 1.09000 * 109.47143 * 295.34122 * 14 13 3 33 33 H 1.08995 * 109.47291 * 55.34722 * 14 13 3 34 34 H 1.09007 * 109.52181 * 182.79122 * 17 15 14 35 35 H 1.09001 * 109.52310 * 302.91655 * 17 15 14 36 36 H 1.08994 * 109.48035 * 177.59394 * 18 17 15 37 37 H 1.09004 * 109.47668 * 297.61831 * 18 17 15 38 38 H 1.08993 * 109.47535 * 184.99887 * 22 20 19 39 39 H 1.09002 * 109.46971 * 305.00548 * 22 20 19 40 40 H 1.09001 * 109.47263 * 300.00055 * 23 22 20 41 41 H 1.09000 * 109.47119 * 59.99831 * 23 22 20 42 42 H 1.08999 * 109.47293 * 179.97438 * 23 22 20 43 43 H 1.09001 * 109.52221 * 182.48647 * 24 20 19 44 44 H 1.08997 * 109.52398 * 62.29494 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4427 0.0381 5 6 1.4952 2.1679 1.2033 6 1 0.8783 3.0446 1.0718 7 6 1.7842 1.7124 2.4722 8 7 2.5358 0.6452 2.6323 9 14 1.1094 2.6120 3.9637 10 1 -0.3747 2.6123 3.9121 11 1 1.5620 1.9274 5.2013 12 1 1.6050 4.0119 3.9636 13 7 1.5927 2.1200 -1.2243 14 6 2.5281 1.8791 -2.3310 15 6 1.9718 2.5010 -3.6135 16 1 0.9708 2.1131 -3.8023 17 6 1.9107 4.0238 -3.4598 18 6 3.3294 4.5673 -3.2714 19 8 4.1373 4.1829 -4.3858 20 6 4.2694 2.7697 -4.5508 21 1 4.7085 2.3381 -3.6514 22 6 5.1734 2.4783 -5.7503 23 6 6.5871 2.9855 -5.4584 24 6 2.8884 2.1540 -4.7907 25 1 -0.3633 0.4262 0.9351 26 1 -0.3633 0.5966 -0.8367 27 1 -0.3632 -1.0230 -0.0984 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 2.7394 0.3249 3.5251 31 1 1.4675 3.1085 -1.0653 32 1 3.4921 2.3307 -2.0968 33 1 2.6545 0.8058 -2.4728 34 1 1.4683 4.4627 -4.3542 35 1 1.3037 4.2782 -2.5909 36 1 3.2962 5.6547 -3.2043 37 1 3.7562 4.1593 -2.3551 38 1 5.2030 1.4037 -5.9305 39 1 4.7809 2.9840 -6.6324 40 1 6.5576 4.0601 -5.2783 41 1 6.9796 2.4799 -4.5762 42 1 7.2313 2.7776 -6.3127 43 1 2.9816 1.0711 -4.8728 44 1 2.4658 2.5551 -5.7119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309997649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:42 Heat of formation + Delta-G solvation = -75.555799 kcal Electronic energy + Delta-G solvation = -20265.143150 eV Core-core repulsion = 17409.222360 eV Total energy + Delta-G solvation = -2855.920790 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.77591 -36.41428 -34.30176 -33.87631 -31.86938 -30.25755 -29.73814 -26.83701 -25.22958 -23.60981 -23.49612 -22.91032 -21.30234 -19.14062 -18.50931 -16.39071 -16.30544 -16.06007 -15.09539 -14.79032 -14.30581 -14.05706 -13.82650 -13.67658 -13.30010 -13.13895 -12.85434 -12.53981 -12.00864 -11.86415 -11.66286 -11.59301 -11.20675 -11.09543 -11.05240 -10.93735 -10.88480 -10.59275 -10.42513 -10.21089 -10.06549 -9.99402 -9.62015 -9.35265 -9.10359 -8.77296 -8.45946 -7.20113 -6.01880 -4.07321 3.30097 3.35118 3.37511 3.89120 4.39680 4.71648 4.88751 5.04638 5.07417 5.16539 5.25487 5.29560 5.36851 5.42928 5.53652 5.60532 5.72589 5.81711 5.87272 5.90442 5.97383 6.04766 6.08101 6.13802 6.25200 6.32969 6.39113 6.51378 6.56318 6.60497 6.72450 6.86594 7.24228 7.33099 7.38834 7.51167 7.74268 7.79833 7.85287 8.26810 8.40187 8.68432 9.02018 9.57446 11.04126 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.004965 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.773801 B = 5637.772348 C = 5799.773654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.101 4.101 3 C 0.216 3.784 4 H -0.002 1.002 5 C -0.513 4.513 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.889 5.889 9 Si 0.893 3.107 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.685 5.685 14 C 0.062 3.938 15 C -0.087 4.087 16 H 0.080 0.920 17 C -0.149 4.149 18 C 0.059 3.941 19 O -0.382 6.382 20 C 0.087 3.913 21 H 0.061 0.939 22 C -0.115 4.115 23 C -0.150 4.150 24 C -0.142 4.142 25 H 0.051 0.949 26 H 0.046 0.954 27 H 0.011 0.989 28 H 0.084 0.916 29 H 0.009 0.991 30 H 0.261 0.739 31 H 0.328 0.672 32 H 0.019 0.981 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.054 0.946 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.061 0.939 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.070 0.930 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.896 3.650 -13.911 14.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.140 4.140 3 C 0.109 3.891 4 H 0.016 0.984 5 C -0.552 4.552 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.721 3.279 10 H -0.202 1.202 11 H -0.214 1.214 12 H -0.204 1.204 13 N -0.316 5.316 14 C -0.068 4.068 15 C -0.106 4.106 16 H 0.098 0.902 17 C -0.187 4.187 18 C -0.018 4.018 19 O -0.301 6.301 20 C 0.030 3.970 21 H 0.079 0.921 22 C -0.153 4.153 23 C -0.207 4.207 24 C -0.180 4.180 25 H 0.070 0.930 26 H 0.065 0.935 27 H 0.031 0.969 28 H 0.102 0.898 29 H 0.027 0.973 30 H 0.071 0.929 31 H 0.146 0.854 32 H 0.037 0.963 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.072 0.928 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.089 0.911 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.645 3.144 -14.052 14.641 hybrid contribution 0.211 0.736 1.390 1.586 sum 2.856 3.880 -12.663 13.548 Atomic orbital electron populations 1.21431 0.97515 0.97059 1.01551 1.21418 0.95085 0.98284 0.99183 1.19095 0.93143 0.91630 0.85264 0.98448 1.21143 1.31671 1.11943 0.90407 0.92458 1.24880 0.95079 0.95006 0.98826 1.69882 1.37348 1.23122 1.22408 0.86649 0.79451 0.79741 0.82094 1.20212 1.21351 1.20408 1.60686 1.47702 1.15833 1.07385 1.22009 0.93754 0.99673 0.91339 1.21208 0.99829 0.94922 0.94610 0.90206 1.22165 0.97551 0.96280 1.02656 1.22600 0.90415 0.99648 0.89124 1.87849 1.70442 1.22182 1.49620 1.22160 0.94765 0.81981 0.98115 0.92145 1.21543 0.95203 1.01027 0.97489 1.21720 0.95862 1.02082 1.01065 1.22205 0.95989 1.01023 0.98825 0.92977 0.93465 0.96940 0.89757 0.97277 0.92930 0.85405 0.96340 0.91941 0.91729 0.90257 0.89367 0.92765 0.90836 0.91427 0.92005 0.92882 0.93063 0.91104 0.91464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 9.46 37.16 0.35 -2.32 16 2 C -0.10 -2.46 5.57 -26.73 -0.15 -2.61 16 3 C 0.22 5.33 2.30 -68.86 -0.16 5.17 16 4 H 0.00 -0.06 7.84 -51.93 -0.41 -0.46 16 5 C -0.51 -13.63 7.33 -34.44 -0.25 -13.88 16 6 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 7 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 8 N -0.89 -25.06 11.34 55.43 0.63 -24.43 16 9 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.68 -14.01 5.50 -107.95 -0.59 -14.60 16 14 C 0.06 1.09 4.34 -3.82 -0.02 1.07 16 15 C -0.09 -1.25 2.90 -90.43 -0.26 -1.51 16 16 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 17 C -0.15 -2.00 5.46 -26.59 -0.15 -2.15 16 18 C 0.06 0.80 6.57 37.21 0.24 1.05 16 19 O -0.38 -5.41 9.94 -35.23 -0.35 -5.77 16 20 C 0.09 1.13 2.37 -26.68 -0.06 1.07 16 21 H 0.06 0.86 6.71 -51.93 -0.35 0.51 16 22 C -0.12 -1.24 5.64 -26.73 -0.15 -1.39 16 23 C -0.15 -1.56 9.81 37.16 0.36 -1.19 16 24 C -0.14 -1.78 4.92 -26.59 -0.13 -1.91 16 25 H 0.05 1.26 7.37 -51.93 -0.38 0.88 16 26 H 0.05 1.03 7.51 -51.93 -0.39 0.64 16 27 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.08 2.27 6.13 -51.93 -0.32 1.95 16 29 H 0.01 0.20 7.42 -51.93 -0.39 -0.19 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.33 6.59 6.57 -39.29 -0.26 6.33 16 32 H 0.02 0.34 5.02 -51.93 -0.26 0.08 16 33 H 0.06 1.15 7.38 -51.93 -0.38 0.77 16 34 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 35 H 0.08 1.11 6.67 -51.93 -0.35 0.76 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 0.82 6.50 -51.93 -0.34 0.48 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 41 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 44 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 329.88 15.07 4.97 4.97 Total: -1.00 -27.52 329.88 -8.81 -36.33 By element: Atomic # 1 Polarization: 12.43 SS G_CDS: -7.99 Total: 4.44 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -0.46 Total: -16.97 kcal Atomic # 7 Polarization: -39.07 SS G_CDS: 0.04 Total: -39.04 kcal Atomic # 8 Polarization: -5.41 SS G_CDS: -0.35 Total: -5.77 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.52 -8.81 -36.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309997649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.226 kcal (2) G-P(sol) polarization free energy of solvation -27.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds