Wall clock time and date at job start Mon Mar 30 2020 07:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.47173 * 2 1 4 4 H 1.08998 * 109.47164 * 177.87650 * 3 2 1 5 5 C 1.50701 * 109.47019 * 57.87613 * 3 2 1 6 6 H 1.08007 * 120.00106 * 240.00198 * 5 3 2 7 7 C 1.37882 * 120.00037 * 59.99866 * 5 3 2 8 8 N 1.31513 * 119.99597 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99891 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47299 * 60.00363 * 9 7 5 11 11 H 1.48500 * 109.46883 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47344 * 300.00022 * 9 7 5 13 13 N 1.46906 * 109.46999 * 297.87830 * 3 2 1 14 14 C 1.46896 * 110.99511 * 274.02614 * 13 3 2 15 15 C 1.53004 * 109.46599 * 175.34969 * 14 13 3 16 16 H 1.08998 * 109.54067 * 304.81715 * 15 14 13 17 17 C 1.53173 * 109.54588 * 64.99833 * 15 14 13 18 18 C 1.53094 * 109.16495 * 62.88671 * 17 15 14 19 19 O 1.42904 * 109.41559 * 57.60631 * 18 17 15 20 20 C 1.42901 * 114.09869 * 298.84505 * 19 18 17 21 21 H 1.08995 * 109.48125 * 301.17441 * 20 19 18 22 22 C 1.52999 * 109.48224 * 181.14816 * 20 19 18 23 23 C 1.53000 * 109.46842 * 64.99914 * 22 20 19 24 24 C 1.53091 * 109.41459 * 61.15784 * 20 19 18 25 25 H 1.09001 * 109.47169 * 294.50189 * 1 2 3 26 26 H 1.08992 * 109.46849 * 54.50641 * 1 2 3 27 27 H 1.09001 * 109.46594 * 174.50424 * 1 2 3 28 28 H 1.08997 * 109.47099 * 120.00300 * 2 1 3 29 29 H 1.09003 * 109.46918 * 240.00200 * 2 1 3 30 30 H 0.97005 * 119.99614 * 179.97438 * 8 7 5 31 31 H 1.00897 * 110.99560 * 150.07326 * 13 3 2 32 32 H 1.09000 * 109.47143 * 295.34122 * 14 13 3 33 33 H 1.08995 * 109.47291 * 55.34722 * 14 13 3 34 34 H 1.09007 * 109.52181 * 182.79122 * 17 15 14 35 35 H 1.09001 * 109.52310 * 302.91655 * 17 15 14 36 36 H 1.08994 * 109.48035 * 177.59394 * 18 17 15 37 37 H 1.09004 * 109.47668 * 297.61831 * 18 17 15 38 38 H 1.08993 * 109.47535 * 184.99887 * 22 20 19 39 39 H 1.09002 * 109.46971 * 305.00548 * 22 20 19 40 40 H 1.09001 * 109.47263 * 300.00055 * 23 22 20 41 41 H 1.09000 * 109.47119 * 59.99831 * 23 22 20 42 42 H 1.08999 * 109.47293 * 179.97438 * 23 22 20 43 43 H 1.09001 * 109.52221 * 182.48647 * 24 20 19 44 44 H 1.08997 * 109.52398 * 62.29494 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 3.1294 1.4427 0.0381 5 6 1.4952 2.1679 1.2033 6 1 0.8783 3.0446 1.0718 7 6 1.7842 1.7124 2.4722 8 7 2.5358 0.6452 2.6323 9 14 1.1094 2.6120 3.9637 10 1 -0.3747 2.6123 3.9121 11 1 1.5620 1.9274 5.2013 12 1 1.6050 4.0119 3.9636 13 7 1.5927 2.1200 -1.2243 14 6 2.5281 1.8791 -2.3310 15 6 1.9718 2.5010 -3.6135 16 1 0.9708 2.1131 -3.8023 17 6 1.9107 4.0238 -3.4598 18 6 3.3294 4.5673 -3.2714 19 8 4.1373 4.1829 -4.3858 20 6 4.2694 2.7697 -4.5508 21 1 4.7085 2.3381 -3.6514 22 6 5.1734 2.4783 -5.7503 23 6 6.5871 2.9855 -5.4584 24 6 2.8884 2.1540 -4.7907 25 1 -0.3633 0.4262 0.9351 26 1 -0.3633 0.5966 -0.8367 27 1 -0.3632 -1.0230 -0.0984 28 1 1.8934 -0.5139 0.8899 29 1 1.8934 -0.5138 -0.8900 30 1 2.7394 0.3249 3.5251 31 1 1.4675 3.1085 -1.0653 32 1 3.4921 2.3307 -2.0968 33 1 2.6545 0.8058 -2.4728 34 1 1.4683 4.4627 -4.3542 35 1 1.3037 4.2782 -2.5909 36 1 3.2962 5.6547 -3.2043 37 1 3.7562 4.1593 -2.3551 38 1 5.2030 1.4037 -5.9305 39 1 4.7809 2.9840 -6.6324 40 1 6.5576 4.0601 -5.2783 41 1 6.9796 2.4799 -4.5762 42 1 7.2313 2.7776 -6.3127 43 1 2.9816 1.0711 -4.8728 44 1 2.4658 2.5551 -5.7119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309997649.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:42 Heat of formation + Delta-G solvation = -91.159232 kcal Electronic energy + Delta-G solvation = -20265.819766 eV Core-core repulsion = 17409.222360 eV Total energy + Delta-G solvation = -2856.597406 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.90557 -38.10180 -35.75971 -34.85220 -33.73242 -31.99424 -30.74953 -28.61236 -26.63921 -25.21883 -24.77372 -24.37281 -22.24859 -21.00639 -19.82565 -18.29752 -17.35998 -17.15260 -16.94627 -16.25676 -15.67933 -15.59009 -15.13339 -14.82208 -14.69291 -14.55321 -14.07738 -13.98895 -13.62020 -13.57590 -12.92735 -12.77452 -12.70047 -12.61180 -12.45743 -12.36538 -12.18016 -12.05803 -11.87927 -11.77113 -11.54049 -11.34361 -11.30224 -11.01752 -10.76882 -10.53486 -10.22215 -8.96065 -8.09560 -6.21851 1.42497 1.43630 1.50780 2.42451 2.86798 3.19306 3.58607 3.71837 3.89664 4.02331 4.08472 4.19917 4.25241 4.34639 4.47464 4.50916 4.60453 4.65899 4.75415 4.78015 4.79858 4.82915 4.93010 4.94642 5.01512 5.09656 5.15247 5.19244 5.26414 5.30466 5.31972 5.37438 5.42816 5.45449 5.57383 5.71351 5.81729 5.90573 6.27534 6.32231 6.50378 6.81361 7.04651 7.47100 8.95518 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026974 B = 0.004965 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.773801 B = 5637.772348 C = 5799.773654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.098 4.098 3 C 0.222 3.778 4 H -0.042 1.042 5 C -0.524 4.524 6 H 0.058 0.942 7 C 0.017 3.983 8 N -0.917 5.917 9 Si 0.954 3.046 10 H -0.271 1.271 11 H -0.287 1.287 12 H -0.272 1.272 13 N -0.677 5.677 14 C 0.068 3.932 15 C -0.080 4.080 16 H 0.080 0.920 17 C -0.144 4.144 18 C 0.059 3.941 19 O -0.389 6.389 20 C 0.083 3.917 21 H 0.040 0.960 22 C -0.112 4.112 23 C -0.149 4.149 24 C -0.136 4.136 25 H 0.030 0.970 26 H 0.055 0.945 27 H 0.033 0.967 28 H 0.055 0.945 29 H 0.018 0.982 30 H 0.260 0.740 31 H 0.331 0.669 32 H 0.009 0.991 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.031 0.969 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.045 0.955 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 4.251 -15.307 16.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.114 3.886 4 H -0.024 1.024 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.182 4.182 8 N -0.557 5.557 9 Si 0.780 3.220 10 H -0.196 1.196 11 H -0.213 1.213 12 H -0.198 1.198 13 N -0.308 5.308 14 C -0.062 4.062 15 C -0.099 4.099 16 H 0.099 0.901 17 C -0.182 4.182 18 C -0.018 4.018 19 O -0.308 6.308 20 C 0.025 3.975 21 H 0.058 0.942 22 C -0.149 4.149 23 C -0.207 4.207 24 C -0.174 4.174 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.052 0.948 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.069 0.931 31 H 0.149 0.851 32 H 0.027 0.973 33 H 0.071 0.929 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.050 0.950 38 H 0.107 0.893 39 H 0.094 0.906 40 H 0.068 0.932 41 H 0.064 0.936 42 H 0.088 0.912 43 H 0.097 0.903 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.791 3.755 -15.467 16.017 hybrid contribution 0.526 0.539 1.789 1.941 sum 2.317 4.294 -13.678 14.522 Atomic orbital electron populations 1.21286 0.95876 0.98435 1.00675 1.21302 0.96412 0.97719 0.98201 1.18885 0.90671 0.92364 0.86711 1.02429 1.21418 1.31472 1.12013 0.91317 0.92417 1.25626 0.95339 0.95687 1.01540 1.70024 1.38422 1.24403 1.22826 0.85678 0.78942 0.78710 0.78713 1.19600 1.21269 1.19759 1.60628 1.48097 1.15728 1.06356 1.22009 0.93021 0.99285 0.91897 1.21140 1.00015 0.95365 0.93404 0.90131 1.22128 0.97298 0.95546 1.03182 1.22612 0.90372 1.00601 0.88192 1.87849 1.70577 1.22933 1.49454 1.22269 0.95484 0.81353 0.98347 0.94209 1.21565 0.94679 1.02136 0.96561 1.21711 0.96201 1.01159 1.01590 1.22173 0.95184 1.01661 0.98391 0.95057 0.92625 0.94753 0.92657 0.96289 0.93072 0.85118 0.97322 0.92943 0.89981 0.90869 0.87689 0.95029 0.89292 0.90596 0.93197 0.93596 0.91196 0.90258 0.89827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.68 9.46 71.98 0.68 -3.99 16 2 C -0.10 -4.79 5.57 30.60 0.17 -4.62 16 3 C 0.22 11.18 2.30 44.17 0.10 11.28 16 4 H -0.04 -2.39 7.84 -2.39 -0.02 -2.41 16 5 C -0.52 -28.10 7.33 25.60 0.19 -27.91 16 6 H 0.06 3.03 7.60 -2.91 -0.02 3.01 16 7 C 0.02 0.94 5.30 84.66 0.45 1.39 16 8 N -0.92 -52.76 11.34 21.45 0.24 -52.52 16 9 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -12.89 7.11 99.48 0.71 -12.19 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 N -0.68 -27.76 5.50 -495.44 -2.72 -30.48 16 14 C 0.07 2.37 4.34 86.31 0.37 2.74 16 15 C -0.08 -2.20 2.90 -10.67 -0.03 -2.23 16 16 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 17 C -0.14 -3.65 5.46 30.68 0.17 -3.48 16 18 C 0.06 1.56 6.57 72.01 0.47 2.03 16 19 O -0.39 -10.58 9.94 -148.98 -1.48 -12.06 16 20 C 0.08 2.05 2.37 30.62 0.07 2.12 16 21 H 0.04 1.14 6.71 -2.39 -0.02 1.13 16 22 C -0.11 -2.19 5.64 30.59 0.17 -2.01 16 23 C -0.15 -2.91 9.81 71.98 0.71 -2.20 16 24 C -0.14 -3.13 4.92 30.69 0.15 -2.98 16 25 H 0.03 1.49 7.37 -2.39 -0.02 1.47 16 26 H 0.05 2.34 7.51 -2.39 -0.02 2.33 16 27 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.05 3.05 6.13 -2.39 -0.01 3.03 16 29 H 0.02 0.86 7.42 -2.39 -0.02 0.84 16 30 H 0.26 14.34 8.31 -92.70 -0.77 13.57 16 31 H 0.33 13.27 6.57 -89.70 -0.59 12.68 16 32 H 0.01 0.33 5.02 -2.39 -0.01 0.32 16 33 H 0.05 1.93 7.38 -2.39 -0.02 1.92 16 34 H 0.08 1.83 8.14 -2.38 -0.02 1.82 16 35 H 0.07 1.95 6.67 -2.39 -0.02 1.93 16 36 H 0.11 2.40 8.14 -2.39 -0.02 2.38 16 37 H 0.03 0.97 6.50 -2.39 -0.02 0.96 16 38 H 0.09 1.46 8.14 -2.39 -0.02 1.45 16 39 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.05 1.08 7.82 -2.39 -0.02 1.06 16 41 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 44 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -58.78 329.88 2.10 -56.68 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.36 Total: 22.98 kcal Atomic # 6 Polarization: -33.54 SS G_CDS: 3.68 Total: -29.86 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.48 Total: -83.00 kcal Atomic # 8 Polarization: -10.58 SS G_CDS: -1.48 Total: -12.06 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -58.78 2.10 -56.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309997649.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.479 kcal (2) G-P(sol) polarization free energy of solvation -58.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds