Wall clock time and date at job start Mon Mar 30 2020 06:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99984 * 2 1 4 4 H 1.08998 * 109.47163 * 19.29502 * 3 2 1 5 5 C 1.52998 * 109.47154 * 259.29570 * 3 2 1 6 6 N 1.46505 * 109.47068 * 60.54775 * 5 3 2 7 7 C 1.36940 * 120.00158 * 265.25491 * 6 5 3 8 8 H 1.07988 * 120.00155 * 142.00613 * 7 6 5 9 9 C 1.38817 * 119.99603 * 322.00233 * 7 6 5 10 10 N 1.31612 * 120.00119 * 340.87186 * 9 7 6 11 11 Si 1.86796 * 119.99848 * 160.87175 * 9 7 6 12 12 H 1.48500 * 109.47052 * 60.00115 * 11 9 7 13 13 H 1.48500 * 109.47412 * 179.97438 * 11 9 7 14 14 H 1.48502 * 109.47281 * 300.00011 * 11 9 7 15 15 C 1.46500 * 120.00023 * 85.24913 * 6 5 3 16 16 C 1.55232 * 110.58425 * 236.26541 * 15 6 5 17 17 C 1.54888 * 102.58986 * 203.33866 * 16 15 6 18 18 C 1.54262 * 104.31115 * 37.93272 * 17 16 15 19 19 C 1.53879 * 106.60205 * 336.32087 * 18 17 16 20 20 C 1.53000 * 109.47210 * 139.29850 * 3 2 1 21 21 C 1.52997 * 109.47266 * 179.97438 * 20 3 2 22 22 C 1.52995 * 109.47146 * 300.00113 * 20 3 2 23 23 H 1.08995 * 109.47638 * 65.70938 * 1 2 3 24 24 H 1.08994 * 109.47247 * 185.71163 * 1 2 3 25 25 H 1.08998 * 109.46905 * 305.70802 * 1 2 3 26 26 H 1.09004 * 109.47321 * 300.55208 * 5 3 2 27 27 H 1.08997 * 109.47328 * 180.54472 * 5 3 2 28 28 H 0.97007 * 120.00449 * 180.02562 * 10 9 7 29 29 H 1.09001 * 110.43519 * 358.85024 * 15 6 5 30 30 H 1.08997 * 110.89771 * 85.04436 * 16 15 6 31 31 H 1.09009 * 110.76566 * 321.57026 * 16 15 6 32 32 H 1.08993 * 110.48301 * 279.18541 * 17 16 15 33 33 H 1.09001 * 110.48569 * 156.67597 * 17 16 15 34 34 H 1.08996 * 110.03506 * 95.61110 * 18 17 16 35 35 H 1.09008 * 110.02961 * 216.99108 * 18 17 16 36 36 H 1.09000 * 110.02845 * 119.28535 * 19 18 17 37 37 H 1.09000 * 110.03691 * 240.67349 * 19 18 17 38 38 H 1.09003 * 109.46994 * 59.99431 * 20 3 2 39 39 H 1.08998 * 109.47206 * 180.02562 * 21 20 3 40 40 H 1.09001 * 109.47287 * 299.99601 * 21 20 3 41 41 H 1.08998 * 109.47028 * 59.99700 * 21 20 3 42 42 H 1.09001 * 109.47567 * 60.00014 * 22 20 3 43 43 H 1.09003 * 109.47494 * 179.97438 * 22 20 3 44 44 H 1.09000 * 109.47229 * 299.99959 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2719 2.0319 0.3396 5 6 2.4624 1.6624 -1.4174 6 7 1.3051 1.6549 -2.3156 7 6 1.0075 0.5314 -3.0397 8 1 -0.0223 0.2440 -3.1919 9 6 2.0297 -0.2382 -3.5782 10 7 3.2313 0.2769 -3.7296 11 14 1.6996 -2.0047 -4.0878 12 1 0.6437 -2.0296 -5.1317 13 1 2.9452 -2.6045 -4.6300 14 1 1.2474 -2.7842 -2.9075 15 6 0.4660 2.8495 -2.4391 16 6 -1.0142 2.5127 -2.1143 17 6 -1.7857 3.6333 -2.8545 18 6 -0.9999 3.8346 -4.1667 19 6 0.4318 3.3363 -3.9026 20 6 3.2167 1.3266 0.9407 21 6 3.8394 2.7241 0.9402 22 6 2.7646 0.9696 2.3580 23 1 -0.3634 0.4227 -0.9366 24 1 -0.3633 -1.0225 0.1023 25 1 -0.3633 0.5998 0.8345 26 1 3.1935 0.9304 -1.7607 27 1 2.9145 2.6542 -1.4156 28 1 3.9456 -0.2607 -4.1062 29 1 0.8300 3.6398 -1.7826 30 1 -1.1975 2.5616 -1.0409 31 1 -1.2832 1.5328 -2.5090 32 1 -1.7853 4.5501 -2.2651 33 1 -2.8072 3.3175 -3.0662 34 1 -1.4558 3.2531 -4.9679 35 1 -0.9848 4.8912 -4.4345 36 1 0.6706 2.5129 -4.5757 37 1 1.1425 4.1508 -4.0426 38 1 3.9549 0.6001 0.6011 39 1 4.6991 2.7390 1.6100 40 1 4.1616 2.9780 -0.0697 41 1 3.1013 3.4509 1.2795 42 1 2.3213 -0.0262 2.3581 43 1 3.6242 0.9842 3.0282 44 1 2.0263 1.6960 2.6977 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310362958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:09 Heat of formation + Delta-G solvation = -46.838481 kcal Electronic energy + Delta-G solvation = -21257.558045 eV Core-core repulsion = 18402.882532 eV Total energy + Delta-G solvation = -2854.675514 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -38.32883 -37.08020 -34.32570 -33.90718 -30.92620 -28.36351 -27.88965 -26.75635 -26.29462 -25.19054 -23.61245 -21.22048 -19.86649 -19.42804 -19.00140 -16.30545 -15.85535 -15.30669 -14.92839 -14.62230 -14.07479 -13.95386 -13.71184 -13.00341 -12.78752 -12.67384 -12.46905 -12.35590 -11.86380 -11.69913 -11.18512 -11.01413 -10.99669 -10.80154 -10.67378 -10.56892 -10.45264 -10.35497 -10.27240 -10.18661 -10.04560 -9.97538 -9.63008 -9.44930 -9.39199 -8.51309 -8.25160 -6.36738 -5.65270 -3.23316 3.45067 3.50545 3.55089 4.58161 4.72582 5.23690 5.37419 5.41098 5.41958 5.46309 5.59684 5.68676 5.80291 5.94324 5.99821 6.12049 6.15665 6.17741 6.18650 6.21870 6.25103 6.32318 6.37280 6.39970 6.48908 6.55015 6.55330 6.59826 6.70213 6.75306 6.82000 6.85110 6.91765 6.95995 7.05178 7.15802 7.43169 7.79282 7.93159 8.30738 8.66673 9.32351 9.95853 10.52097 11.35000 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.013599 B = 0.010784 C = 0.007671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2058.469504 B = 2595.796719 C = 3649.107561 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.368 6.368 3 C 0.080 3.920 4 H 0.036 0.964 5 C 0.131 3.869 6 N -0.573 5.573 7 C -0.239 4.239 8 H 0.056 0.944 9 C 0.019 3.981 10 N -0.891 5.891 11 Si 0.891 3.109 12 H -0.285 1.285 13 H -0.293 1.293 14 H -0.281 1.281 15 C 0.171 3.829 16 C -0.136 4.136 17 C -0.122 4.122 18 C -0.120 4.120 19 C -0.133 4.133 20 C -0.099 4.099 21 C -0.143 4.143 22 C -0.140 4.140 23 H 0.068 0.932 24 H 0.061 0.939 25 H 0.012 0.988 26 H 0.102 0.898 27 H 0.029 0.971 28 H 0.252 0.748 29 H 0.047 0.953 30 H 0.047 0.953 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.049 0.951 40 H 0.063 0.937 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.044 0.956 44 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.987 5.199 6.918 9.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.286 6.286 3 C 0.019 3.981 4 H 0.054 0.946 5 C 0.005 3.995 6 N -0.291 5.291 7 C -0.369 4.369 8 H 0.074 0.926 9 C -0.180 4.180 10 N -0.533 5.533 11 Si 0.722 3.278 12 H -0.212 1.212 13 H -0.219 1.219 14 H -0.208 1.208 15 C 0.063 3.937 16 C -0.176 4.176 17 C -0.160 4.160 18 C -0.158 4.158 19 C -0.172 4.172 20 C -0.118 4.118 21 C -0.200 4.200 22 C -0.197 4.197 23 H 0.087 0.913 24 H 0.079 0.921 25 H 0.031 0.969 26 H 0.120 0.880 27 H 0.047 0.953 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.101 0.899 37 H 0.061 0.939 38 H 0.092 0.908 39 H 0.068 0.932 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.690 4.955 6.826 9.207 hybrid contribution -0.354 -0.708 -0.275 0.838 sum -4.044 4.248 6.551 8.793 Atomic orbital electron populations 1.22757 0.82543 1.00220 1.00276 1.87785 1.18536 1.27354 1.94973 1.22939 0.93051 0.84423 0.97639 0.94593 1.21477 0.91861 0.99687 0.86514 1.43781 1.30047 1.09156 1.46132 1.18663 0.91617 1.00064 1.26570 0.92604 1.25074 0.96586 0.98780 0.97601 1.69945 1.02144 1.35078 1.46174 0.86560 0.76847 0.86179 0.78262 1.21167 1.21917 1.20756 1.21290 0.90063 0.88989 0.93380 1.23002 0.97971 0.98574 0.98012 1.22275 0.98169 0.98674 0.96916 1.22067 0.97294 0.99333 0.97120 1.22547 0.93742 1.00369 1.00586 1.21238 0.98187 0.97355 0.95020 1.21831 0.99827 0.96247 1.02126 1.21748 1.00170 1.01595 0.96181 0.91315 0.92087 0.96898 0.87998 0.95284 0.93784 0.93461 0.93446 0.90808 0.92834 0.93020 0.92797 0.93457 0.89882 0.93939 0.90784 0.93218 0.91769 0.93311 0.92303 0.93648 0.93724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 10.43 101.05 1.05 1.80 16 2 O -0.37 -7.99 9.25 -35.23 -0.33 -8.31 16 3 C 0.08 1.58 2.06 -26.73 -0.06 1.52 16 4 H 0.04 0.70 7.60 -51.93 -0.39 0.30 16 5 C 0.13 2.98 4.56 -4.04 -0.02 2.96 16 6 N -0.57 -13.33 1.70 -163.57 -0.28 -13.61 16 7 C -0.24 -6.16 6.01 -15.06 -0.09 -6.25 16 8 H 0.06 1.46 6.42 -52.49 -0.34 1.12 16 9 C 0.02 0.53 4.96 -17.43 -0.09 0.44 16 10 N -0.89 -25.26 11.43 55.49 0.63 -24.63 16 11 Si 0.89 21.91 29.59 -169.99 -5.03 16.88 16 12 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 13 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 14 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 15 C 0.17 3.46 3.39 -66.08 -0.22 3.23 16 16 C -0.14 -2.45 5.01 -24.55 -0.12 -2.57 16 17 C -0.12 -1.90 6.82 -25.07 -0.17 -2.07 16 18 C -0.12 -1.98 6.80 -25.61 -0.17 -2.15 16 19 C -0.13 -2.65 6.42 -25.61 -0.16 -2.81 16 20 C -0.10 -1.68 2.72 -90.62 -0.25 -1.93 16 21 C -0.14 -2.11 8.84 37.16 0.33 -1.78 16 22 C -0.14 -2.07 9.05 37.16 0.34 -1.74 16 23 H 0.07 1.41 3.83 -51.93 -0.20 1.21 16 24 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 25 H 0.01 0.21 7.99 -51.93 -0.41 -0.20 16 26 H 0.10 2.71 5.52 -51.93 -0.29 2.42 16 27 H 0.03 0.64 6.31 -51.93 -0.33 0.31 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.05 0.93 7.92 -51.93 -0.41 0.52 16 30 H 0.05 0.81 8.08 -51.93 -0.42 0.39 16 31 H 0.07 1.46 5.94 -51.92 -0.31 1.15 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.05 0.70 8.14 -51.92 -0.42 0.27 16 36 H 0.08 1.95 7.07 -51.93 -0.37 1.58 16 37 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.06 1.01 6.42 -51.93 -0.33 0.68 16 41 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.06 0.93 7.68 -51.93 -0.40 0.53 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 LS Contribution 329.03 15.07 4.96 4.96 Total: -1.00 -27.46 329.03 -7.66 -35.12 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -7.98 Total: 0.94 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 0.37 Total: -11.34 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.36 Total: -38.23 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: -0.33 Total: -8.31 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.03 Total: 16.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -27.46 -7.66 -35.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310362958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.718 kcal (2) G-P(sol) polarization free energy of solvation -27.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds