Wall clock time and date at job start Mon Mar 30 2020 06:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99995 * 2 1 4 4 H 1.09004 * 109.46911 * 1.64651 * 3 2 1 5 5 C 1.53001 * 109.47584 * 121.64460 * 3 2 1 6 6 N 1.46502 * 109.46930 * 300.00512 * 5 3 2 7 7 C 1.36935 * 120.00278 * 91.41440 * 6 5 3 8 8 H 1.07996 * 120.00015 * 215.44165 * 7 6 5 9 9 C 1.38807 * 119.99797 * 35.43936 * 7 6 5 10 10 N 1.31623 * 120.00095 * 23.36211 * 9 7 6 11 11 Si 1.86803 * 120.00004 * 203.35722 * 9 7 6 12 12 H 1.48501 * 109.46958 * 90.00568 * 11 9 7 13 13 H 1.48498 * 109.47082 * 210.00096 * 11 9 7 14 14 H 1.48500 * 109.47208 * 330.00335 * 11 9 7 15 15 C 1.46507 * 119.99690 * 271.41466 * 6 5 3 16 16 C 1.54266 * 110.02950 * 237.90965 * 15 6 5 17 17 C 1.54964 * 104.15703 * 217.13389 * 16 15 6 18 18 C 1.54887 * 102.77555 * 37.89175 * 17 16 15 19 19 C 1.53872 * 110.03440 * 120.69029 * 15 6 5 20 20 C 1.53004 * 109.47281 * 241.64841 * 3 2 1 21 21 C 1.53004 * 109.47014 * 54.13038 * 20 3 2 22 22 C 1.52998 * 109.46982 * 174.12817 * 20 3 2 23 23 H 1.09002 * 109.46893 * 173.92555 * 1 2 3 24 24 H 1.09003 * 109.47126 * 53.93207 * 1 2 3 25 25 H 1.09000 * 109.47411 * 293.92489 * 1 2 3 26 26 H 1.08995 * 109.46867 * 59.99944 * 5 3 2 27 27 H 1.08997 * 109.46967 * 180.02562 * 5 3 2 28 28 H 0.96996 * 120.00021 * 179.97438 * 10 9 7 29 29 H 1.08999 * 110.01606 * 359.29716 * 15 6 5 30 30 H 1.09001 * 110.48785 * 335.78554 * 16 15 6 31 31 H 1.09006 * 110.48421 * 98.42741 * 16 15 6 32 32 H 1.08994 * 110.72464 * 279.57183 * 17 16 15 33 33 H 1.09004 * 110.91892 * 156.29604 * 17 16 15 34 34 H 1.09008 * 110.48496 * 203.40237 * 18 17 16 35 35 H 1.08999 * 110.60505 * 80.81608 * 18 17 16 36 36 H 1.08994 * 110.03305 * 238.57089 * 19 15 6 37 37 H 1.09003 * 110.02705 * 0.02562 * 19 15 6 38 38 H 1.08994 * 109.46555 * 294.12934 * 20 3 2 39 39 H 1.08997 * 109.47427 * 54.52709 * 21 20 3 40 40 H 1.08999 * 109.46738 * 174.53408 * 21 20 3 41 41 H 1.09005 * 109.46780 * 294.52869 * 21 20 3 42 42 H 1.09001 * 109.46563 * 179.97438 * 22 20 3 43 43 H 1.08994 * 109.47570 * 299.99495 * 22 20 3 44 44 H 1.08997 * 109.47244 * 60.00004 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2195 2.0552 0.0295 5 6 2.9090 1.4637 1.2280 6 7 2.1111 1.2843 2.4435 7 6 1.9935 0.0424 3.0083 8 1 1.0661 -0.2521 3.4769 9 6 3.0663 -0.8379 2.9786 10 7 4.2923 -0.3772 2.8474 11 14 2.7701 -2.6765 3.1249 12 1 2.5774 -3.2561 1.7713 13 1 3.9419 -3.3165 3.7750 14 1 1.5557 -2.9186 3.9445 15 6 1.4390 2.4337 3.0548 16 6 1.9117 2.6081 4.5129 17 6 0.6387 3.0598 5.2724 18 6 -0.4769 2.2217 4.6000 19 6 -0.0790 2.1885 3.1099 20 6 2.8434 1.4928 -1.2695 21 6 1.9795 1.1912 -2.4957 22 6 3.3453 2.9363 -1.3417 23 1 -0.3633 -1.0219 -0.1088 24 1 -0.3633 0.6050 -0.8307 25 1 -0.3634 0.4167 0.9393 26 1 3.6996 0.7140 1.1985 27 1 3.3519 2.4596 1.2281 28 1 5.0420 -0.9924 2.8270 29 1 1.6509 3.3372 2.4830 30 1 2.2777 1.6618 4.9110 31 1 2.6852 3.3736 4.5741 32 1 0.4613 4.1255 5.1283 33 1 0.7138 2.8223 6.3336 34 1 -1.4456 2.7055 4.7255 35 1 -0.4994 1.2126 5.0114 36 1 -0.6040 2.9735 2.5656 37 1 -0.3156 1.2142 2.6823 38 1 3.6949 0.8127 -1.2487 39 1 1.0785 1.8039 -2.4650 40 1 2.5423 1.4177 -3.4012 41 1 1.7022 0.1370 -2.4944 42 1 3.9392 3.0696 -2.2459 43 1 2.4938 3.6164 -1.3625 44 1 3.9607 3.1512 -0.4682 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310362959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:12 Heat of formation + Delta-G solvation = -45.511965 kcal Electronic energy + Delta-G solvation = -21248.580743 eV Core-core repulsion = 18393.962751 eV Total energy + Delta-G solvation = -2854.617992 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.30827 -37.17241 -34.29052 -33.81619 -30.89639 -28.37997 -27.83372 -26.72244 -26.30976 -25.39949 -23.49479 -21.18710 -19.91130 -19.41577 -19.01635 -16.26307 -15.88089 -15.33671 -14.82737 -14.58974 -14.04912 -13.93984 -13.75556 -13.08676 -12.86014 -12.71952 -12.46657 -12.40047 -11.85859 -11.72092 -11.19732 -10.99869 -10.86512 -10.81268 -10.68416 -10.53927 -10.36410 -10.31116 -10.22163 -10.16975 -10.01663 -9.93217 -9.74248 -9.51901 -9.37122 -8.51667 -8.23351 -6.39664 -5.61279 -3.13282 3.50029 3.55778 3.59210 4.63802 4.70432 5.24252 5.39439 5.41032 5.47558 5.50847 5.58550 5.65972 5.80317 5.86974 5.92329 6.04990 6.11208 6.14028 6.15158 6.24549 6.29315 6.33550 6.34629 6.36102 6.46789 6.51320 6.56053 6.61980 6.63473 6.68672 6.80429 6.87613 6.89766 6.92418 7.01606 7.26670 7.43523 7.79460 7.99564 8.27670 8.69883 9.35863 10.01744 10.56244 11.39651 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.010513 C = 0.007785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.464972 B = 2662.620519 C = 3595.794889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.356 6.356 3 C 0.081 3.919 4 H 0.038 0.962 5 C 0.136 3.864 6 N -0.572 5.572 7 C -0.230 4.230 8 H 0.056 0.944 9 C 0.018 3.982 10 N -0.891 5.891 11 Si 0.889 3.111 12 H -0.286 1.286 13 H -0.297 1.297 14 H -0.282 1.282 15 C 0.169 3.831 16 C -0.129 4.129 17 C -0.124 4.124 18 C -0.117 4.117 19 C -0.137 4.137 20 C -0.109 4.109 21 C -0.139 4.139 22 C -0.142 4.142 23 H 0.066 0.934 24 H 0.018 0.982 25 H 0.043 0.957 26 H 0.103 0.897 27 H 0.031 0.969 28 H 0.250 0.750 29 H 0.044 0.956 30 H 0.085 0.915 31 H 0.044 0.956 32 H 0.051 0.949 33 H 0.052 0.948 34 H 0.046 0.954 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.072 0.928 38 H 0.074 0.926 39 H 0.043 0.957 40 H 0.044 0.956 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.047 0.953 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.867 6.251 -4.688 9.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.274 6.274 3 C 0.021 3.979 4 H 0.056 0.944 5 C 0.009 3.991 6 N -0.291 5.291 7 C -0.360 4.360 8 H 0.074 0.926 9 C -0.182 4.182 10 N -0.534 5.534 11 Si 0.720 3.280 12 H -0.213 1.213 13 H -0.224 1.224 14 H -0.208 1.208 15 C 0.061 3.939 16 C -0.169 4.169 17 C -0.162 4.162 18 C -0.154 4.154 19 C -0.176 4.176 20 C -0.129 4.129 21 C -0.196 4.196 22 C -0.200 4.200 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.061 0.939 26 H 0.120 0.880 27 H 0.049 0.951 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.104 0.896 31 H 0.063 0.937 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.066 0.934 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.583 5.994 -4.679 9.434 hybrid contribution -0.376 -0.760 -0.022 0.848 sum -5.959 5.234 -4.701 9.220 Atomic orbital electron populations 1.22619 0.83389 1.00570 0.98869 1.87940 1.17473 1.27321 1.94673 1.23019 0.95493 0.84190 0.95221 0.94377 1.21337 0.94683 0.99799 0.83245 1.43868 1.57399 1.03560 1.24258 1.18681 0.95103 0.89300 1.32878 0.92633 1.24925 0.94755 0.98088 1.00385 1.70001 0.97411 1.33160 1.52863 0.86510 0.76806 0.86989 0.77698 1.21272 1.22380 1.20756 1.21035 0.90589 0.89945 0.92290 1.22796 0.95295 1.01553 0.97216 1.22444 0.96833 0.98312 0.98595 1.22237 0.96841 0.99717 0.96643 1.22684 0.98538 1.01148 0.95230 1.21458 0.99251 0.96814 0.95362 1.21742 0.99129 1.01680 0.97087 1.21817 1.00611 0.96012 1.01519 0.91543 0.96303 0.93896 0.87990 0.95089 0.93968 0.93793 0.89604 0.93745 0.92990 0.92922 0.93570 0.92008 0.94118 0.90913 0.90774 0.93785 0.93663 0.92363 0.93263 0.93372 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 10.71 101.05 1.08 1.85 16 2 O -0.36 -7.65 8.88 -35.23 -0.31 -7.97 16 3 C 0.08 1.60 2.09 -26.73 -0.06 1.54 16 4 H 0.04 0.73 7.60 -51.93 -0.39 0.34 16 5 C 0.14 3.09 4.76 -4.04 -0.02 3.08 16 6 N -0.57 -13.45 2.32 -164.39 -0.38 -13.83 16 7 C -0.23 -6.00 7.05 -15.06 -0.11 -6.11 16 8 H 0.06 1.49 7.25 -52.49 -0.38 1.11 16 9 C 0.02 0.49 4.91 -17.43 -0.09 0.40 16 10 N -0.89 -25.49 11.47 55.49 0.64 -24.85 16 11 Si 0.89 22.25 29.61 -169.99 -5.03 17.22 16 12 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 13 H -0.30 -7.52 7.11 56.52 0.40 -7.11 16 14 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 15 C 0.17 3.46 3.42 -66.81 -0.23 3.23 16 16 C -0.13 -2.58 6.42 -25.03 -0.16 -2.74 16 17 C -0.12 -2.05 6.91 -24.70 -0.17 -2.22 16 18 C -0.12 -1.95 6.83 -25.07 -0.17 -2.12 16 19 C -0.14 -2.50 6.16 -25.62 -0.16 -2.66 16 20 C -0.11 -1.85 2.69 -90.62 -0.24 -2.10 16 21 C -0.14 -2.06 8.89 37.16 0.33 -1.73 16 22 C -0.14 -2.07 8.96 37.16 0.33 -1.74 16 23 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 24 H 0.02 0.29 8.13 -51.93 -0.42 -0.13 16 25 H 0.04 0.81 6.32 -51.93 -0.33 0.48 16 26 H 0.10 2.71 5.45 -51.93 -0.28 2.43 16 27 H 0.03 0.67 6.41 -51.93 -0.33 0.34 16 28 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 29 H 0.04 0.87 7.84 -51.93 -0.41 0.46 16 30 H 0.09 2.02 7.03 -51.93 -0.37 1.65 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 35 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.07 1.47 5.21 -51.93 -0.27 1.20 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 39 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.92 7.73 -51.93 -0.40 0.51 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.06 0.95 6.59 -51.93 -0.34 0.60 16 LS Contribution 334.99 15.07 5.05 5.05 Total: -1.00 -27.93 334.99 -7.83 -35.76 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: -8.14 Total: -0.06 kcal Atomic # 6 Polarization: -11.67 SS G_CDS: 0.35 Total: -11.32 kcal Atomic # 7 Polarization: -38.94 SS G_CDS: 0.25 Total: -38.68 kcal Atomic # 8 Polarization: -7.65 SS G_CDS: -0.31 Total: -7.97 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.03 Total: 17.22 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.93 -7.83 -35.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310362959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.747 kcal (2) G-P(sol) polarization free energy of solvation -27.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds