Wall clock time and date at job start Mon Mar 30 2020 06:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42901 * 113.99995 * 2 1 4 4 H 1.09004 * 109.46911 * 1.64651 * 3 2 1 5 5 C 1.53001 * 109.47584 * 121.64460 * 3 2 1 6 6 N 1.46502 * 109.46930 * 300.00512 * 5 3 2 7 7 C 1.36935 * 120.00278 * 91.41440 * 6 5 3 8 8 H 1.07996 * 120.00015 * 215.44165 * 7 6 5 9 9 C 1.38807 * 119.99797 * 35.43936 * 7 6 5 10 10 N 1.31623 * 120.00095 * 23.36211 * 9 7 6 11 11 Si 1.86803 * 120.00004 * 203.35722 * 9 7 6 12 12 H 1.48501 * 109.46958 * 90.00568 * 11 9 7 13 13 H 1.48498 * 109.47082 * 210.00096 * 11 9 7 14 14 H 1.48500 * 109.47208 * 330.00335 * 11 9 7 15 15 C 1.46507 * 119.99690 * 271.41466 * 6 5 3 16 16 C 1.54266 * 110.02950 * 237.90965 * 15 6 5 17 17 C 1.54964 * 104.15703 * 217.13389 * 16 15 6 18 18 C 1.54887 * 102.77555 * 37.89175 * 17 16 15 19 19 C 1.53872 * 110.03440 * 120.69029 * 15 6 5 20 20 C 1.53004 * 109.47281 * 241.64841 * 3 2 1 21 21 C 1.53004 * 109.47014 * 54.13038 * 20 3 2 22 22 C 1.52998 * 109.46982 * 174.12817 * 20 3 2 23 23 H 1.09002 * 109.46893 * 173.92555 * 1 2 3 24 24 H 1.09003 * 109.47126 * 53.93207 * 1 2 3 25 25 H 1.09000 * 109.47411 * 293.92489 * 1 2 3 26 26 H 1.08995 * 109.46867 * 59.99944 * 5 3 2 27 27 H 1.08997 * 109.46967 * 180.02562 * 5 3 2 28 28 H 0.96996 * 120.00021 * 179.97438 * 10 9 7 29 29 H 1.08999 * 110.01606 * 359.29716 * 15 6 5 30 30 H 1.09001 * 110.48785 * 335.78554 * 16 15 6 31 31 H 1.09006 * 110.48421 * 98.42741 * 16 15 6 32 32 H 1.08994 * 110.72464 * 279.57183 * 17 16 15 33 33 H 1.09004 * 110.91892 * 156.29604 * 17 16 15 34 34 H 1.09008 * 110.48496 * 203.40237 * 18 17 16 35 35 H 1.08999 * 110.60505 * 80.81608 * 18 17 16 36 36 H 1.08994 * 110.03305 * 238.57089 * 19 15 6 37 37 H 1.09003 * 110.02705 * 0.02562 * 19 15 6 38 38 H 1.08994 * 109.46555 * 294.12934 * 20 3 2 39 39 H 1.08997 * 109.47427 * 54.52709 * 21 20 3 40 40 H 1.08999 * 109.46738 * 174.53408 * 21 20 3 41 41 H 1.09005 * 109.46780 * 294.52869 * 21 20 3 42 42 H 1.09001 * 109.46563 * 179.97438 * 22 20 3 43 43 H 1.08994 * 109.47570 * 299.99495 * 22 20 3 44 44 H 1.08997 * 109.47244 * 60.00004 * 22 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.2195 2.0552 0.0295 5 6 2.9090 1.4637 1.2280 6 7 2.1111 1.2843 2.4435 7 6 1.9935 0.0424 3.0083 8 1 1.0661 -0.2521 3.4769 9 6 3.0663 -0.8379 2.9786 10 7 4.2923 -0.3772 2.8474 11 14 2.7701 -2.6765 3.1249 12 1 2.5774 -3.2561 1.7713 13 1 3.9419 -3.3165 3.7750 14 1 1.5557 -2.9186 3.9445 15 6 1.4390 2.4337 3.0548 16 6 1.9117 2.6081 4.5129 17 6 0.6387 3.0598 5.2724 18 6 -0.4769 2.2217 4.6000 19 6 -0.0790 2.1885 3.1099 20 6 2.8434 1.4928 -1.2695 21 6 1.9795 1.1912 -2.4957 22 6 3.3453 2.9363 -1.3417 23 1 -0.3633 -1.0219 -0.1088 24 1 -0.3633 0.6050 -0.8307 25 1 -0.3634 0.4167 0.9393 26 1 3.6996 0.7140 1.1985 27 1 3.3519 2.4596 1.2281 28 1 5.0420 -0.9924 2.8270 29 1 1.6509 3.3372 2.4830 30 1 2.2777 1.6618 4.9110 31 1 2.6852 3.3736 4.5741 32 1 0.4613 4.1255 5.1283 33 1 0.7138 2.8223 6.3336 34 1 -1.4456 2.7055 4.7255 35 1 -0.4994 1.2126 5.0114 36 1 -0.6040 2.9735 2.5656 37 1 -0.3156 1.2142 2.6823 38 1 3.6949 0.8127 -1.2487 39 1 1.0785 1.8039 -2.4650 40 1 2.5423 1.4177 -3.4012 41 1 1.7022 0.1370 -2.4944 42 1 3.9392 3.0696 -2.2459 43 1 2.4938 3.6164 -1.3625 44 1 3.9607 3.1512 -0.4682 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310362959.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:54:11 Heat of formation + Delta-G solvation = -59.813177 kcal Electronic energy + Delta-G solvation = -21249.200890 eV Core-core repulsion = 18393.962751 eV Total energy + Delta-G solvation = -2855.238139 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.91097 -38.69732 -35.86381 -35.44516 -32.84109 -29.92282 -29.33137 -28.07914 -27.88969 -26.97590 -25.22151 -22.86203 -21.33278 -20.83991 -20.73865 -18.14825 -17.45376 -17.00921 -16.40075 -16.16571 -15.89883 -15.50879 -15.14044 -14.72957 -14.53491 -14.11012 -13.95502 -13.64493 -13.41587 -13.00319 -12.93679 -12.77606 -12.71707 -12.28901 -12.21103 -12.11147 -11.99084 -11.83923 -11.74605 -11.70481 -11.60885 -11.43022 -11.31679 -11.20864 -11.07456 -10.32390 -10.05078 -8.36926 -7.66113 -5.20313 1.44854 1.51594 1.53270 2.60349 3.22587 3.41847 3.64591 4.01044 4.02192 4.10879 4.17315 4.33582 4.37233 4.47159 4.63571 4.69748 4.72722 4.77692 4.80375 4.86734 4.92410 4.93276 4.97139 4.99485 5.01522 5.03765 5.15876 5.17787 5.24335 5.27593 5.29775 5.35314 5.48111 5.53484 5.57314 5.72022 5.74218 5.82547 5.94838 6.58856 6.79622 7.34194 8.07111 8.55495 9.29661 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014192 B = 0.010513 C = 0.007785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1972.464972 B = 2662.620519 C = 3595.794889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.388 6.388 3 C 0.092 3.908 4 H 0.048 0.952 5 C 0.137 3.863 6 N -0.583 5.583 7 C -0.206 4.206 8 H 0.047 0.953 9 C -0.032 4.032 10 N -0.921 5.921 11 Si 0.933 3.067 12 H -0.295 1.295 13 H -0.302 1.302 14 H -0.274 1.274 15 C 0.160 3.840 16 C -0.130 4.130 17 C -0.112 4.112 18 C -0.113 4.113 19 C -0.129 4.129 20 C -0.109 4.109 21 C -0.131 4.131 22 C -0.136 4.136 23 H 0.074 0.926 24 H 0.046 0.954 25 H 0.032 0.968 26 H 0.062 0.938 27 H 0.035 0.965 28 H 0.243 0.757 29 H 0.054 0.946 30 H 0.042 0.958 31 H 0.044 0.956 32 H 0.078 0.922 33 H 0.061 0.939 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.066 0.934 37 H 0.051 0.949 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.044 0.956 42 H 0.070 0.930 43 H 0.062 0.938 44 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.923 8.019 -5.447 12.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.307 6.307 3 C 0.032 3.968 4 H 0.066 0.934 5 C 0.011 3.989 6 N -0.302 5.302 7 C -0.337 4.337 8 H 0.064 0.936 9 C -0.228 4.228 10 N -0.567 5.567 11 Si 0.764 3.236 12 H -0.223 1.223 13 H -0.230 1.230 14 H -0.199 1.199 15 C 0.054 3.946 16 C -0.169 4.169 17 C -0.150 4.150 18 C -0.151 4.151 19 C -0.168 4.168 20 C -0.128 4.128 21 C -0.188 4.188 22 C -0.193 4.193 23 H 0.092 0.908 24 H 0.064 0.936 25 H 0.051 0.949 26 H 0.080 0.920 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.080 0.920 34 H 0.096 0.904 35 H 0.062 0.938 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.085 0.915 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.081 0.919 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.671 7.774 -5.435 12.198 hybrid contribution 0.233 -1.243 0.221 1.284 sum -7.437 6.531 -5.213 11.187 Atomic orbital electron populations 1.22714 0.81718 1.01653 0.99385 1.87903 1.19482 1.28455 1.94828 1.22816 0.95227 0.83860 0.94936 0.93369 1.21239 0.94451 0.98600 0.84659 1.44024 1.57542 1.03769 1.24895 1.18678 0.94012 0.90318 1.30720 0.93582 1.25400 0.94844 1.00580 1.01984 1.70113 0.97753 1.33417 1.55406 0.85785 0.76596 0.84169 0.77009 1.22253 1.22959 1.19860 1.21277 0.91840 0.89164 0.92351 1.22704 0.97192 0.99517 0.97489 1.22395 0.94310 0.99720 0.98580 1.22222 0.98477 0.99234 0.95167 1.22563 0.96736 1.00816 0.96708 1.21427 0.98350 0.97932 0.95131 1.21661 0.99429 1.01054 0.96664 1.21764 1.01189 0.94423 1.01945 0.90763 0.93593 0.94942 0.91976 0.94685 0.94823 0.92734 0.93898 0.93674 0.90323 0.91979 0.90364 0.93763 0.91578 0.93057 0.93305 0.92484 0.91514 0.93710 0.91133 0.91860 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.45 10.71 113.37 1.21 2.67 16 2 O -0.39 -16.59 8.88 -148.98 -1.32 -17.92 16 3 C 0.09 3.55 2.09 30.60 0.06 3.61 16 4 H 0.05 1.75 7.60 -2.38 -0.02 1.74 16 5 C 0.14 6.34 4.76 86.38 0.41 6.75 16 6 N -0.58 -27.68 2.32 -674.02 -1.56 -29.24 16 7 C -0.21 -11.01 7.05 84.03 0.59 -10.41 16 8 H 0.05 2.53 7.25 -2.91 -0.02 2.51 16 9 C -0.03 -1.82 4.91 84.86 0.42 -1.41 16 10 N -0.92 -54.91 11.47 21.65 0.25 -54.66 16 11 Si 0.93 47.04 29.61 68.60 2.03 49.07 16 12 H -0.29 -15.14 7.11 99.48 0.71 -14.44 16 13 H -0.30 -15.37 7.11 99.48 0.71 -14.66 16 14 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 15 C 0.16 6.39 3.42 45.71 0.16 6.55 16 16 C -0.13 -5.11 6.42 31.70 0.20 -4.90 16 17 C -0.11 -3.40 6.91 31.91 0.22 -3.18 16 18 C -0.11 -3.48 6.83 31.67 0.22 -3.27 16 19 C -0.13 -4.44 6.16 31.32 0.19 -4.25 16 20 C -0.11 -3.58 2.69 -10.79 -0.03 -3.61 16 21 C -0.13 -3.56 8.89 71.98 0.64 -2.92 16 22 C -0.14 -3.69 8.96 71.98 0.65 -3.04 16 23 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 24 H 0.05 1.32 8.13 -2.39 -0.02 1.30 16 25 H 0.03 1.18 6.32 -2.39 -0.02 1.16 16 26 H 0.06 3.45 5.45 -2.39 -0.01 3.44 16 27 H 0.03 1.55 6.41 -2.39 -0.02 1.53 16 28 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.05 2.05 7.84 -2.39 -0.02 2.03 16 30 H 0.04 2.05 7.03 -2.39 -0.02 2.03 16 31 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.05 2.00 5.21 -2.39 -0.01 1.99 16 38 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 39 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.04 1.33 7.73 -2.38 -0.02 1.31 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.05 1.40 6.59 -2.39 -0.02 1.39 16 Total: -1.00 -62.11 334.99 5.27 -56.84 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.93 Total: 13.32 kcal Atomic # 6 Polarization: -22.36 SS G_CDS: 4.94 Total: -17.42 kcal Atomic # 7 Polarization: -82.59 SS G_CDS: -1.31 Total: -83.90 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -1.32 Total: -17.92 kcal Atomic # 14 Polarization: 47.04 SS G_CDS: 2.03 Total: 49.07 kcal Total: -62.11 5.27 -56.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310362959.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.970 kcal (2) G-P(sol) polarization free energy of solvation -62.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.271 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds