Wall clock time and date at job start Mon Mar 30 2020 07:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46734 * 2 1 4 4 H 1.08996 * 109.53911 * 54.90170 * 3 2 1 5 5 C 1.53118 * 109.50094 * 294.80233 * 3 2 1 6 6 C 1.53123 * 109.15948 * 182.40670 * 5 3 2 7 7 C 1.53045 * 109.27754 * 57.65599 * 6 5 3 8 8 H 1.09001 * 109.45889 * 180.80506 * 7 6 5 9 9 C 1.53001 * 109.46153 * 60.82407 * 7 6 5 10 10 N 1.46845 * 109.50980 * 300.81465 * 7 6 5 11 11 C 1.46907 * 110.98997 * 185.84934 * 10 7 6 12 12 C 1.53003 * 109.46795 * 51.99158 * 11 10 7 13 13 O 1.42896 * 109.47167 * 62.55289 * 12 11 10 14 14 C 1.42904 * 113.99702 * 175.02076 * 13 12 11 15 15 C 1.50697 * 109.47188 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00246 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00121 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47027 * 60.00680 * 19 17 15 21 21 H 1.48499 * 109.46934 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47277 * 300.00518 * 19 17 15 23 23 C 1.46850 * 111.20259 * 61.76085 * 10 7 6 24 24 H 1.09005 * 109.46796 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47365 * 299.99753 * 1 2 3 26 26 H 1.08994 * 109.47701 * 60.00261 * 1 2 3 27 27 H 1.08994 * 109.46883 * 239.99757 * 2 1 3 28 28 H 1.09000 * 109.46874 * 119.99597 * 2 1 3 29 29 H 1.09001 * 109.52299 * 302.30854 * 5 3 2 30 30 H 1.08991 * 109.52433 * 62.50452 * 5 3 2 31 31 H 1.09004 * 109.50267 * 177.59260 * 6 5 3 32 32 H 1.08992 * 109.50256 * 297.67352 * 6 5 3 33 33 H 1.08996 * 109.47037 * 55.41923 * 9 7 6 34 34 H 1.09002 * 109.46348 * 175.41717 * 9 7 6 35 35 H 1.08995 * 109.47500 * 295.41595 * 9 7 6 36 36 H 1.08997 * 109.47037 * 171.98651 * 11 10 7 37 37 H 1.08992 * 109.47269 * 291.99034 * 11 10 7 38 38 H 1.08999 * 109.46601 * 182.55669 * 12 11 10 39 39 H 1.09008 * 109.46759 * 302.55125 * 12 11 10 40 40 H 1.09004 * 109.47260 * 300.00079 * 14 13 12 41 41 H 1.08996 * 109.47167 * 59.99998 * 14 13 12 42 42 H 0.96996 * 120.00418 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.46625 * 178.22826 * 23 10 7 44 44 H 1.09001 * 109.45830 * 58.24592 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9831 0.8404 5 6 1.6394 2.1263 -1.3102 6 6 2.2048 3.5492 -1.3278 7 6 3.7253 3.4909 -1.1636 8 1 4.1293 4.5032 -1.1614 9 6 4.3334 2.7016 -2.3247 10 7 4.0565 2.8289 0.1046 11 6 5.5021 2.8781 0.3620 12 6 5.9932 4.3219 0.2385 13 8 5.3554 5.1285 1.2308 14 6 5.8282 6.4763 1.2761 15 6 5.0914 7.2312 2.3523 16 1 4.3378 6.7316 2.9429 17 6 5.3802 8.5594 2.5836 18 7 6.2983 9.1677 1.8648 19 14 4.4664 9.4953 3.9172 20 1 4.7025 8.8430 5.2302 21 1 4.9578 10.8959 3.9644 22 1 3.0121 9.4913 3.6169 23 6 3.5651 1.4452 0.1258 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0423 1.5638 -2.1525 30 1 0.5527 2.1652 -1.3834 31 1 1.9593 4.0266 -2.2765 32 1 1.7714 4.1230 -0.5087 33 1 4.0208 3.1463 -3.2695 34 1 5.4207 2.7290 -2.2524 35 1 3.9922 1.6675 -2.2794 36 1 5.7047 2.5102 1.3678 37 1 6.0220 2.2541 -0.3648 38 1 7.0729 4.3521 0.3846 39 1 5.7498 4.7049 -0.7526 40 1 6.8958 6.4796 1.4963 41 1 5.6546 6.9548 0.3123 42 1 6.5012 10.1021 2.0273 43 1 3.8530 0.9718 1.0644 44 1 3.9992 0.8930 -0.7077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000312982354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:24 Heat of formation + Delta-G solvation = -64.233773 kcal Electronic energy + Delta-G solvation = -20004.737207 eV Core-core repulsion = 17149.307377 eV Total energy + Delta-G solvation = -2855.429830 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.84371 -36.75798 -35.13190 -32.89306 -32.41872 -30.22509 -28.91679 -27.18790 -26.47090 -24.01618 -23.01987 -22.28289 -21.97951 -20.06539 -18.39426 -16.42585 -16.29237 -15.72044 -15.21253 -14.76981 -14.50245 -14.32089 -14.19607 -14.00648 -13.34346 -13.13073 -12.84960 -12.78231 -12.18465 -12.13477 -12.02009 -11.93652 -11.58788 -11.37346 -11.05916 -10.95283 -10.80525 -10.77751 -10.64514 -10.55272 -10.30480 -10.04326 -10.00833 -9.75098 -9.03762 -8.72740 -8.08392 -7.87576 -6.05054 -4.05914 3.36613 3.38669 3.43238 4.07696 4.40541 4.71057 4.76962 4.88389 5.01545 5.12296 5.17939 5.21017 5.31367 5.38383 5.46808 5.48698 5.56215 5.59722 5.63977 5.67790 5.76774 5.80998 5.84933 5.90605 5.97089 5.97901 6.07152 6.10271 6.15634 6.19789 6.26655 6.35000 6.39159 6.49061 6.62967 7.16360 7.42079 7.46069 7.49635 7.86859 8.23281 8.68456 9.08891 9.58808 11.06658 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.004554 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.636373 B = 6146.863746 C = 6629.870027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C -0.085 4.085 4 H 0.080 0.920 5 C -0.114 4.114 6 C -0.111 4.111 7 C 0.075 3.925 8 H 0.094 0.906 9 C -0.188 4.188 10 N -0.515 5.515 11 C 0.061 3.939 12 C 0.061 3.939 13 O -0.378 6.378 14 C 0.194 3.806 15 C -0.510 4.510 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.901 5.901 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.058 3.942 24 H 0.049 0.951 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.052 0.948 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.263 0.737 43 H 0.069 0.931 44 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.113 -17.195 -7.944 20.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.103 4.103 4 H 0.098 0.902 5 C -0.152 4.152 6 C -0.149 4.149 7 C -0.033 4.033 8 H 0.112 0.888 9 C -0.247 4.247 10 N -0.239 5.239 11 C -0.066 4.066 12 C -0.017 4.017 13 O -0.297 6.297 14 C 0.119 3.881 15 C -0.548 4.548 16 H 0.085 0.915 17 C -0.145 4.145 18 N -0.541 5.541 19 Si 0.734 3.266 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.070 4.070 24 H 0.068 0.932 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.093 0.907 33 H 0.077 0.923 34 H 0.071 0.929 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -7.394 -16.817 -7.450 19.823 hybrid contribution 0.377 0.289 -0.234 0.529 sum -7.016 -16.528 -7.683 19.530 Atomic orbital electron populations 1.21796 0.95907 1.01163 1.02057 1.21526 0.95905 0.96522 1.01608 1.21202 0.94987 0.95331 0.98810 0.90160 1.21680 1.00164 0.96265 0.97063 1.21579 0.94725 0.96702 1.01866 1.21772 0.95641 0.99126 0.86762 0.88849 1.22518 1.01003 1.01315 0.99819 1.62011 1.13981 1.15289 1.32577 1.22123 0.87461 0.96048 1.01010 1.22345 0.95532 0.90818 0.92977 1.87977 1.63042 1.24112 1.54570 1.20173 0.94217 0.77107 0.96574 1.21032 1.21312 0.94857 1.17635 0.91549 1.24939 0.95461 0.97255 0.96861 1.69955 1.32084 1.11695 1.40341 0.86411 0.79989 0.78360 0.81802 1.20040 1.21243 1.20020 1.22130 0.94929 0.89673 1.00310 0.93171 0.92633 0.92565 0.92436 0.92078 0.92464 0.92069 0.91977 0.90747 0.92349 0.92876 0.92267 0.90283 0.94534 0.94383 0.94423 0.98049 0.98034 0.92709 0.91235 0.95068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.67 37.16 0.36 -0.92 16 2 C -0.12 -1.08 5.40 -26.73 -0.14 -1.23 16 3 C -0.08 -0.96 2.35 -90.54 -0.21 -1.17 16 4 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 5 C -0.11 -1.26 4.68 -26.61 -0.12 -1.38 16 6 C -0.11 -1.46 5.61 -26.64 -0.15 -1.61 16 7 C 0.08 1.10 2.51 -67.72 -0.17 0.93 16 8 H 0.09 1.62 5.79 -51.93 -0.30 1.31 16 9 C -0.19 -2.26 8.07 37.16 0.30 -1.96 16 10 N -0.52 -8.00 4.62 -226.68 -1.05 -9.05 16 11 C 0.06 0.96 5.04 -3.82 -0.02 0.94 16 12 C 0.06 1.17 5.57 37.16 0.21 1.38 16 13 O -0.38 -9.37 10.24 -35.23 -0.36 -9.73 16 14 C 0.19 5.44 5.69 36.00 0.20 5.65 16 15 C -0.51 -15.36 9.43 -34.44 -0.32 -15.69 16 16 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 19 Si 0.91 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.06 0.72 4.45 -3.83 -0.02 0.71 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.46 6.63 -51.93 -0.34 0.12 16 27 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.59 6.66 -51.93 -0.35 0.25 16 30 H 0.06 0.62 6.70 -51.93 -0.35 0.27 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 32 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.05 0.65 6.95 -51.93 -0.36 0.28 16 35 H 0.06 0.66 4.80 -51.93 -0.25 0.42 16 36 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.04 0.49 6.97 -51.93 -0.36 0.13 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.04 0.70 6.03 -51.92 -0.31 0.39 16 40 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 41 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 42 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 43 H 0.07 0.86 8.12 -51.93 -0.42 0.44 16 44 H 0.03 0.37 6.09 -51.93 -0.32 0.05 16 LS Contribution 331.50 15.07 5.00 5.00 Total: -1.00 -31.20 331.50 -8.87 -40.07 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -7.98 Total: -4.04 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -0.19 Total: -12.81 kcal Atomic # 7 Polarization: -35.41 SS G_CDS: -0.31 Total: -35.72 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: -0.36 Total: -9.73 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -31.20 -8.87 -40.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312982354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.167 kcal (2) G-P(sol) polarization free energy of solvation -31.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds