Wall clock time and date at job start Mon Mar 30 2020 07:41:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.46734 * 2 1 4 4 H 1.08996 * 109.53911 * 54.90170 * 3 2 1 5 5 C 1.53118 * 109.50094 * 294.80233 * 3 2 1 6 6 C 1.53123 * 109.15948 * 182.40670 * 5 3 2 7 7 C 1.53045 * 109.27754 * 57.65599 * 6 5 3 8 8 H 1.09001 * 109.45889 * 180.80506 * 7 6 5 9 9 C 1.53001 * 109.46153 * 60.82407 * 7 6 5 10 10 N 1.46845 * 109.50980 * 300.81465 * 7 6 5 11 11 C 1.46907 * 110.98997 * 185.84934 * 10 7 6 12 12 C 1.53003 * 109.46795 * 51.99158 * 11 10 7 13 13 O 1.42896 * 109.47167 * 62.55289 * 12 11 10 14 14 C 1.42904 * 113.99702 * 175.02076 * 13 12 11 15 15 C 1.50697 * 109.47188 * 180.02562 * 14 13 12 16 16 H 1.08006 * 119.99834 * 0.02562 * 15 14 13 17 17 C 1.37876 * 120.00246 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00121 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99993 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47027 * 60.00680 * 19 17 15 21 21 H 1.48499 * 109.46934 * 180.02562 * 19 17 15 22 22 H 1.48495 * 109.47277 * 300.00518 * 19 17 15 23 23 C 1.46850 * 111.20259 * 61.76085 * 10 7 6 24 24 H 1.09005 * 109.46796 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47365 * 299.99753 * 1 2 3 26 26 H 1.08994 * 109.47701 * 60.00261 * 1 2 3 27 27 H 1.08994 * 109.46883 * 239.99757 * 2 1 3 28 28 H 1.09000 * 109.46874 * 119.99597 * 2 1 3 29 29 H 1.09001 * 109.52299 * 302.30854 * 5 3 2 30 30 H 1.08991 * 109.52433 * 62.50452 * 5 3 2 31 31 H 1.09004 * 109.50267 * 177.59260 * 6 5 3 32 32 H 1.08992 * 109.50256 * 297.67352 * 6 5 3 33 33 H 1.08996 * 109.47037 * 55.41923 * 9 7 6 34 34 H 1.09002 * 109.46348 * 175.41717 * 9 7 6 35 35 H 1.08995 * 109.47500 * 295.41595 * 9 7 6 36 36 H 1.08997 * 109.47037 * 171.98651 * 11 10 7 37 37 H 1.08992 * 109.47269 * 291.99034 * 11 10 7 38 38 H 1.08999 * 109.46601 * 182.55669 * 12 11 10 39 39 H 1.09008 * 109.46759 * 302.55125 * 12 11 10 40 40 H 1.09004 * 109.47260 * 300.00079 * 14 13 12 41 41 H 1.08996 * 109.47167 * 59.99998 * 14 13 12 42 42 H 0.96996 * 120.00418 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.46625 * 178.22826 * 23 10 7 44 44 H 1.09001 * 109.45830 * 58.24592 * 23 10 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6046 1.9831 0.8404 5 6 1.6394 2.1263 -1.3102 6 6 2.2048 3.5492 -1.3278 7 6 3.7253 3.4909 -1.1636 8 1 4.1293 4.5032 -1.1614 9 6 4.3334 2.7016 -2.3247 10 7 4.0565 2.8289 0.1046 11 6 5.5021 2.8781 0.3620 12 6 5.9932 4.3219 0.2385 13 8 5.3554 5.1285 1.2308 14 6 5.8282 6.4763 1.2761 15 6 5.0914 7.2312 2.3523 16 1 4.3378 6.7316 2.9429 17 6 5.3802 8.5594 2.5836 18 7 6.2983 9.1677 1.8648 19 14 4.4664 9.4953 3.9172 20 1 4.7025 8.8430 5.2302 21 1 4.9578 10.8959 3.9644 22 1 3.0121 9.4913 3.6169 23 6 3.5651 1.4452 0.1258 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0423 1.5638 -2.1525 30 1 0.5527 2.1652 -1.3834 31 1 1.9593 4.0266 -2.2765 32 1 1.7714 4.1230 -0.5087 33 1 4.0208 3.1463 -3.2695 34 1 5.4207 2.7290 -2.2524 35 1 3.9922 1.6675 -2.2794 36 1 5.7047 2.5102 1.3678 37 1 6.0220 2.2541 -0.3648 38 1 7.0729 4.3521 0.3846 39 1 5.7498 4.7049 -0.7526 40 1 6.8958 6.4796 1.4963 41 1 5.6546 6.9548 0.3123 42 1 6.5012 10.1021 2.0273 43 1 3.8530 0.9718 1.0644 44 1 3.9992 0.8930 -0.7077 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000312982354.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:24 Heat of formation + Delta-G solvation = -83.908685 kcal Electronic energy + Delta-G solvation = -20005.590375 eV Core-core repulsion = 17149.307377 eV Total energy + Delta-G solvation = -2856.282998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.93828 -38.50608 -36.26240 -34.89877 -33.74607 -31.25042 -30.29724 -28.90243 -27.83264 -25.08885 -24.46752 -23.99888 -23.18478 -21.08143 -19.48718 -18.58438 -17.66236 -17.45000 -16.64782 -16.21609 -15.79100 -15.57763 -15.44373 -15.23797 -14.82556 -14.41864 -14.03217 -13.81857 -13.69193 -13.37893 -13.07077 -13.02749 -12.93125 -12.76953 -12.69188 -12.60580 -12.26003 -11.98252 -11.88251 -11.77814 -11.73864 -11.29881 -11.24664 -11.00620 -10.89967 -10.80836 -10.17401 -9.00844 -8.31800 -6.43964 1.39096 1.44286 1.52651 2.35045 2.94476 3.01707 3.25779 3.78753 3.88273 3.96694 4.11238 4.19682 4.22550 4.30308 4.35839 4.47589 4.48017 4.60562 4.63212 4.66015 4.69821 4.76593 4.81669 4.83064 4.91977 4.99279 5.04177 5.08109 5.10145 5.16907 5.19621 5.20968 5.28310 5.33200 5.40457 5.55346 5.57652 5.64945 5.97344 6.25046 6.36619 6.56909 6.85844 7.28297 8.80505 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025182 B = 0.004554 C = 0.004222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1111.636373 B = 6146.863746 C = 6629.870027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.082 4.082 4 H 0.055 0.945 5 C -0.106 4.106 6 C -0.111 4.111 7 C 0.073 3.927 8 H 0.056 0.944 9 C -0.178 4.178 10 N -0.543 5.543 11 C 0.070 3.930 12 C 0.053 3.947 13 O -0.393 6.393 14 C 0.210 3.790 15 C -0.547 4.547 16 H 0.059 0.941 17 C 0.007 3.993 18 N -0.932 5.932 19 Si 0.982 3.018 20 H -0.265 1.265 21 H -0.273 1.273 22 H -0.266 1.266 23 C 0.059 3.941 24 H 0.062 0.938 25 H 0.046 0.954 26 H 0.058 0.942 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.044 0.956 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.044 0.956 39 H 0.041 0.959 40 H -0.017 1.017 41 H -0.019 1.019 42 H 0.271 0.729 43 H 0.069 0.931 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.061 -18.554 -8.250 21.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.149 4.149 3 C -0.101 4.101 4 H 0.074 0.926 5 C -0.143 4.143 6 C -0.149 4.149 7 C -0.035 4.035 8 H 0.074 0.926 9 C -0.236 4.236 10 N -0.267 5.267 11 C -0.057 4.057 12 C -0.024 4.024 13 O -0.313 6.313 14 C 0.135 3.865 15 C -0.584 4.584 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.571 5.571 19 Si 0.805 3.195 20 H -0.190 1.190 21 H -0.198 1.198 22 H -0.191 1.191 23 C -0.068 4.068 24 H 0.081 0.919 25 H 0.065 0.935 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.069 0.931 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.001 0.999 41 H -0.001 1.001 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -8.338 -18.202 -7.771 21.476 hybrid contribution 0.706 0.690 -0.189 1.005 sum -7.632 -17.512 -7.960 20.695 Atomic orbital electron populations 1.21793 0.95331 1.01937 1.01816 1.21475 0.96345 0.94749 1.02343 1.21175 0.94111 0.96720 0.98114 0.92610 1.21636 1.00790 0.94577 0.97345 1.21568 0.93817 0.98194 1.01286 1.21697 0.96511 0.97606 0.87669 0.92630 1.22412 1.00647 1.01641 0.98934 1.61964 1.13722 1.17447 1.33611 1.22024 0.88349 0.93594 1.01777 1.22672 0.95779 0.92133 0.91825 1.87931 1.63846 1.22909 1.56571 1.19778 0.92901 0.78767 0.95072 1.21342 1.22179 0.96115 1.18789 0.92292 1.25949 0.96046 0.97872 0.99227 1.70061 1.33009 1.12369 1.41646 0.85250 0.78709 0.77102 0.78447 1.18990 1.19785 1.19120 1.22191 0.95660 0.87998 1.00980 0.91890 0.93464 0.92272 0.91143 0.91870 0.90849 0.90978 0.90785 0.93680 0.91260 0.93072 0.90754 0.90670 0.91437 0.93804 0.94059 0.99932 1.00147 0.92037 0.91259 0.93362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.67 71.98 0.70 -1.53 16 2 C -0.11 -1.77 5.40 30.60 0.17 -1.61 16 3 C -0.08 -1.76 2.35 -10.74 -0.03 -1.78 16 4 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 5 C -0.11 -2.13 4.68 30.67 0.14 -1.99 16 6 C -0.11 -2.89 5.61 30.65 0.17 -2.72 16 7 C 0.07 2.13 2.51 44.94 0.11 2.25 16 8 H 0.06 2.01 5.79 -2.39 -0.01 2.00 16 9 C -0.18 -3.92 8.07 71.98 0.58 -3.34 16 10 N -0.54 -16.73 4.62 -871.08 -4.03 -20.76 16 11 C 0.07 2.18 5.04 86.30 0.44 2.61 16 12 C 0.05 2.08 5.57 71.98 0.40 2.48 16 13 O -0.39 -20.31 10.24 -148.98 -1.52 -21.84 16 14 C 0.21 12.34 5.69 71.23 0.41 12.75 16 15 C -0.55 -33.88 9.43 25.60 0.24 -33.64 16 16 H 0.06 3.65 7.81 -2.91 -0.02 3.62 16 17 C 0.01 0.44 5.46 84.65 0.46 0.90 16 18 N -0.93 -57.35 13.29 21.45 0.28 -57.07 16 19 Si 0.98 45.62 29.54 68.60 2.03 47.65 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 22 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 23 C 0.06 1.39 4.45 86.32 0.38 1.77 16 24 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 25 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 26 H 0.06 0.83 6.63 -2.39 -0.02 0.81 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.07 1.27 6.66 -2.39 -0.02 1.26 16 30 H 0.07 1.31 6.70 -2.39 -0.02 1.29 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.05 1.14 6.95 -2.39 -0.02 1.13 16 35 H 0.07 1.42 4.80 -2.39 -0.01 1.41 16 36 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 37 H 0.07 1.68 6.97 -2.39 -0.02 1.67 16 38 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.04 1.59 6.03 -2.38 -0.01 1.58 16 40 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 41 H -0.02 -1.18 8.14 -2.39 -0.02 -1.20 16 42 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 43 H 0.07 1.62 8.12 -2.39 -0.02 1.60 16 44 H 0.05 0.98 6.09 -2.39 -0.01 0.97 16 Total: -1.00 -68.40 331.50 1.88 -66.52 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.94 Total: 9.33 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: 4.17 Total: -23.84 kcal Atomic # 7 Polarization: -74.08 SS G_CDS: -3.74 Total: -77.83 kcal Atomic # 8 Polarization: -20.31 SS G_CDS: -1.52 Total: -21.84 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 2.03 Total: 47.65 kcal Total: -68.40 1.88 -66.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000312982354.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.385 kcal (2) G-P(sol) polarization free energy of solvation -68.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds