Wall clock time and date at job start Mon Mar 30 2020 07:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47260 * 2 1 4 4 H 1.08997 * 109.47792 * 54.99719 * 3 2 1 5 5 C 1.53003 * 109.46985 * 294.99626 * 3 2 1 6 6 C 1.53003 * 109.47181 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.46881 * 60.00356 * 6 5 3 8 8 C 1.53003 * 109.47293 * 299.99854 * 7 6 5 9 9 C 1.52995 * 109.46842 * 60.00130 * 8 7 6 10 10 H 1.09000 * 109.47072 * 60.00238 * 9 8 7 11 11 N 1.46503 * 109.46827 * 179.97438 * 9 8 7 12 12 C 1.36935 * 119.99814 * 62.83123 * 11 9 8 13 13 H 1.08002 * 120.00173 * 321.80708 * 12 11 9 14 14 C 1.38818 * 120.00175 * 141.81188 * 12 11 9 15 15 N 1.31621 * 119.99338 * 339.35606 * 14 12 11 16 16 Si 1.86803 * 120.00315 * 159.35851 * 14 12 11 17 17 H 1.48501 * 109.47200 * 89.99785 * 16 14 12 18 18 H 1.48497 * 109.47071 * 210.00133 * 16 14 12 19 19 H 1.48502 * 109.46855 * 329.99679 * 16 14 12 20 20 C 1.46501 * 120.00004 * 242.82878 * 11 9 8 21 21 C 1.52995 * 109.47028 * 90.00607 * 20 11 9 22 22 O 1.42897 * 109.47771 * 64.99838 * 21 20 11 23 23 C 1.42900 * 114.00209 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47137 * 300.00036 * 1 2 3 25 25 H 1.08998 * 109.47515 * 59.99908 * 1 2 3 26 26 H 1.09004 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47027 * 119.99599 * 2 1 3 28 28 H 1.09002 * 109.47201 * 239.99422 * 2 1 3 29 29 H 1.08994 * 109.47403 * 300.00417 * 5 3 2 30 30 H 1.09003 * 109.47032 * 60.00454 * 5 3 2 31 31 H 1.09000 * 109.47065 * 300.00245 * 6 5 3 32 32 H 1.09001 * 109.47080 * 180.02562 * 6 5 3 33 33 H 1.09008 * 109.47012 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47362 * 60.00070 * 7 6 5 35 35 H 1.08994 * 109.47175 * 299.99939 * 8 7 6 36 36 H 1.09001 * 109.47017 * 180.02562 * 8 7 6 37 37 H 0.97008 * 119.99287 * 179.97438 * 15 14 12 38 38 H 1.09010 * 109.46881 * 210.00064 * 20 11 9 39 39 H 1.08992 * 109.47302 * 329.99761 * 20 11 9 40 40 H 1.09003 * 109.47251 * 184.99928 * 21 20 11 41 41 H 1.09007 * 109.47178 * 304.99672 * 21 20 11 42 42 H 1.09002 * 109.46658 * 299.99277 * 23 22 21 43 43 H 1.08996 * 109.47373 * 59.99844 * 23 22 21 44 44 H 1.09003 * 109.46724 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1264 -1.3074 6 6 2.1447 3.5692 -1.3072 7 6 3.6695 3.5715 -1.1812 8 6 4.0742 2.8875 0.1262 9 6 3.5648 1.4449 0.1259 10 1 3.9998 0.9061 -0.7158 11 7 3.9529 0.7897 1.3775 12 6 3.4747 1.2579 2.5722 13 1 3.3686 2.3207 2.7323 14 6 3.1264 0.3664 3.5777 15 7 2.8619 -0.8886 3.2819 16 14 3.0329 0.9478 5.3505 17 1 1.6583 1.4284 5.6420 18 1 3.3667 -0.1783 6.2590 19 1 3.9993 2.0558 5.5596 20 6 4.8525 -0.3662 1.3509 21 6 6.3019 0.1132 1.4510 22 8 6.5137 0.7278 2.7236 23 6 7.8431 1.2137 2.9204 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 2.0698 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 1.7097 4.1080 -0.4654 32 1 1.8560 4.0566 -2.2384 33 1 4.0324 4.5994 -1.1806 34 1 4.1045 3.0327 -2.0230 35 1 3.6393 3.4263 0.9679 36 1 5.1605 2.8896 0.2162 37 1 2.6189 -1.5116 3.9846 38 1 4.6275 -1.0212 2.1928 39 1 4.7142 -0.9129 0.4182 40 1 6.9745 -0.7376 1.3421 41 1 6.5007 0.8369 0.6605 42 1 8.5478 0.3858 2.8419 43 1 8.0734 1.9603 2.1604 44 1 7.9219 1.6659 3.9091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317185534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:09 Heat of formation + Delta-G solvation = -51.482971 kcal Electronic energy + Delta-G solvation = -21197.308605 eV Core-core repulsion = 18342.431691 eV Total energy + Delta-G solvation = -2854.876914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -38.54882 -36.91726 -34.53024 -33.05984 -31.21172 -29.63037 -28.42270 -27.06430 -25.60226 -23.73916 -23.07497 -21.58895 -19.99085 -19.81886 -19.00594 -16.28019 -15.72981 -14.98971 -14.88021 -14.23085 -14.05064 -13.92311 -13.71071 -13.43737 -13.01585 -12.88956 -12.49626 -12.11175 -11.84548 -11.63893 -11.33747 -10.90027 -10.83005 -10.79359 -10.70460 -10.61755 -10.46982 -10.40920 -10.13316 -10.10011 -9.79741 -9.65083 -9.35361 -9.26486 -9.05496 -8.72882 -8.22843 -6.35608 -5.58694 -3.13783 3.49288 3.56600 3.62954 4.65210 4.75335 5.24135 5.37071 5.43231 5.56306 5.68709 5.79457 5.84400 5.85159 5.94906 6.04360 6.07736 6.12192 6.18876 6.19871 6.23355 6.25130 6.28979 6.36890 6.46439 6.52781 6.59896 6.68313 6.71189 6.77642 6.78901 6.83680 6.89974 7.03081 7.16518 7.30986 7.50838 7.73538 7.76800 8.03914 8.14899 8.73524 9.38624 10.02351 10.58844 11.41885 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.009764 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.317764 B = 2866.925508 C = 3695.894660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.119 4.119 3 C -0.083 4.083 4 H 0.071 0.929 5 C -0.115 4.115 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.125 4.125 9 C 0.181 3.819 10 H 0.041 0.959 11 N -0.570 5.570 12 C -0.225 4.225 13 H 0.053 0.947 14 C 0.019 3.981 15 N -0.892 5.892 16 Si 0.891 3.109 17 H -0.293 1.293 18 H -0.293 1.293 19 H -0.280 1.280 20 C 0.144 3.856 21 C 0.046 3.954 22 O -0.353 6.353 23 C 0.030 3.970 24 H 0.049 0.951 25 H 0.037 0.963 26 H 0.039 0.961 27 H 0.110 0.890 28 H 0.032 0.968 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.048 0.952 37 H 0.250 0.750 38 H 0.103 0.897 39 H 0.037 0.963 40 H 0.021 0.979 41 H 0.026 0.974 42 H 0.025 0.975 43 H 0.027 0.973 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.418 3.686 -7.689 8.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.156 4.156 3 C -0.103 4.103 4 H 0.090 0.910 5 C -0.153 4.153 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.164 4.164 9 C 0.074 3.926 10 H 0.059 0.941 11 N -0.288 5.288 12 C -0.355 4.355 13 H 0.070 0.930 14 C -0.180 4.180 15 N -0.536 5.536 16 Si 0.722 3.278 17 H -0.220 1.220 18 H -0.220 1.220 19 H -0.206 1.206 20 C 0.017 3.983 21 C -0.033 4.033 22 O -0.271 6.271 23 C -0.067 4.067 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.058 0.942 27 H 0.129 0.871 28 H 0.051 0.949 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.060 0.940 38 H 0.120 0.880 39 H 0.055 0.945 40 H 0.039 0.961 41 H 0.044 0.956 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.216 3.545 -7.433 8.528 hybrid contribution 0.373 0.335 0.764 0.914 sum 2.589 3.880 -6.669 8.138 Atomic orbital electron populations 1.21736 0.97978 0.99962 1.00272 1.21557 0.93767 0.97091 1.03175 1.21404 0.97586 0.95767 0.95535 0.91018 1.21679 0.99599 0.95122 0.98868 1.21503 0.96059 0.97369 1.00388 1.21525 0.95683 0.99402 0.98721 1.21965 0.99798 0.98695 0.95969 1.20400 0.92078 0.91273 0.88867 0.94092 1.43691 1.50462 1.33580 1.01098 1.18671 1.36163 0.90729 0.89979 0.92982 1.24954 0.98523 0.96120 0.98417 1.69893 1.48447 1.03990 1.31299 0.86495 0.77265 0.77841 0.86227 1.22022 1.21954 1.20593 1.21020 0.84650 0.91259 1.01336 1.23480 1.00939 0.94169 0.84696 1.88221 1.26414 1.77299 1.35134 1.22618 0.86263 0.97080 1.00759 0.93230 0.94361 0.94191 0.87140 0.94878 0.93154 0.92893 0.92370 0.93427 0.93374 0.92989 0.91988 0.93323 0.93998 0.87960 0.94467 0.96093 0.95609 0.95657 0.95416 0.90843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 9.67 37.15 0.36 -2.17 16 2 C -0.12 -2.37 5.32 -26.74 -0.14 -2.51 16 3 C -0.08 -1.60 1.50 -90.62 -0.14 -1.74 16 4 H 0.07 1.58 7.60 -51.93 -0.39 1.18 16 5 C -0.11 -1.83 4.96 -26.73 -0.13 -1.96 16 6 C -0.12 -1.71 5.92 -26.73 -0.16 -1.87 16 7 C -0.12 -1.76 5.92 -26.73 -0.16 -1.92 16 8 C -0.12 -2.32 5.21 -26.73 -0.14 -2.46 16 9 C 0.18 3.65 2.08 -67.93 -0.14 3.51 16 10 H 0.04 0.81 7.78 -51.93 -0.40 0.41 16 11 N -0.57 -13.26 1.49 -165.66 -0.25 -13.51 16 12 C -0.23 -5.89 7.62 -15.06 -0.11 -6.01 16 13 H 0.05 1.42 6.97 -52.49 -0.37 1.05 16 14 C 0.02 0.50 4.97 -17.43 -0.09 0.42 16 15 N -0.89 -24.66 10.87 55.49 0.60 -24.06 16 16 Si 0.89 22.20 29.60 -169.99 -5.03 17.17 16 17 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 18 H -0.29 -7.42 7.11 56.52 0.40 -7.01 16 19 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 20 C 0.14 3.28 5.70 -4.04 -0.02 3.26 16 21 C 0.05 0.95 6.28 37.15 0.23 1.18 16 22 O -0.35 -7.83 10.18 -35.23 -0.36 -8.19 16 23 C 0.03 0.51 11.01 101.05 1.11 1.63 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.60 6.56 -51.93 -0.34 0.26 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.11 2.68 6.85 -51.93 -0.36 2.32 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.81 6.57 -51.93 -0.34 0.47 16 31 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 34 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 35 H 0.06 1.27 7.10 -51.93 -0.37 0.90 16 36 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.10 2.68 5.53 -51.92 -0.29 2.39 16 39 H 0.04 0.79 7.90 -51.93 -0.41 0.38 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 43 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 334.78 15.07 5.05 5.05 Total: -1.00 -27.24 334.78 -7.84 -35.08 By element: Atomic # 1 Polarization: 7.44 SS G_CDS: -8.32 Total: -0.89 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 0.47 Total: -10.65 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.36 Total: -37.56 kcal Atomic # 8 Polarization: -7.83 SS G_CDS: -0.36 Total: -8.19 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.24 -7.84 -35.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317185534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.405 kcal (2) G-P(sol) polarization free energy of solvation -27.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds