Wall clock time and date at job start Mon Mar 30 2020 07:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47260 * 2 1 4 4 H 1.08997 * 109.47792 * 54.99719 * 3 2 1 5 5 C 1.53003 * 109.46985 * 294.99626 * 3 2 1 6 6 C 1.53003 * 109.47181 * 179.97438 * 5 3 2 7 7 C 1.52992 * 109.46881 * 60.00356 * 6 5 3 8 8 C 1.53003 * 109.47293 * 299.99854 * 7 6 5 9 9 C 1.52995 * 109.46842 * 60.00130 * 8 7 6 10 10 H 1.09000 * 109.47072 * 60.00238 * 9 8 7 11 11 N 1.46503 * 109.46827 * 179.97438 * 9 8 7 12 12 C 1.36935 * 119.99814 * 62.83123 * 11 9 8 13 13 H 1.08002 * 120.00173 * 321.80708 * 12 11 9 14 14 C 1.38818 * 120.00175 * 141.81188 * 12 11 9 15 15 N 1.31621 * 119.99338 * 339.35606 * 14 12 11 16 16 Si 1.86803 * 120.00315 * 159.35851 * 14 12 11 17 17 H 1.48501 * 109.47200 * 89.99785 * 16 14 12 18 18 H 1.48497 * 109.47071 * 210.00133 * 16 14 12 19 19 H 1.48502 * 109.46855 * 329.99679 * 16 14 12 20 20 C 1.46501 * 120.00004 * 242.82878 * 11 9 8 21 21 C 1.52995 * 109.47028 * 90.00607 * 20 11 9 22 22 O 1.42897 * 109.47771 * 64.99838 * 21 20 11 23 23 C 1.42900 * 114.00209 * 180.02562 * 22 21 20 24 24 H 1.09000 * 109.47137 * 300.00036 * 1 2 3 25 25 H 1.08998 * 109.47515 * 59.99908 * 1 2 3 26 26 H 1.09004 * 109.47132 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47027 * 119.99599 * 2 1 3 28 28 H 1.09002 * 109.47201 * 239.99422 * 2 1 3 29 29 H 1.08994 * 109.47403 * 300.00417 * 5 3 2 30 30 H 1.09003 * 109.47032 * 60.00454 * 5 3 2 31 31 H 1.09000 * 109.47065 * 300.00245 * 6 5 3 32 32 H 1.09001 * 109.47080 * 180.02562 * 6 5 3 33 33 H 1.09008 * 109.47012 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.47362 * 60.00070 * 7 6 5 35 35 H 1.08994 * 109.47175 * 299.99939 * 8 7 6 36 36 H 1.09001 * 109.47017 * 180.02562 * 8 7 6 37 37 H 0.97008 * 119.99287 * 179.97438 * 15 14 12 38 38 H 1.09010 * 109.46881 * 210.00064 * 20 11 9 39 39 H 1.08992 * 109.47302 * 329.99761 * 20 11 9 40 40 H 1.09003 * 109.47251 * 184.99928 * 21 20 11 41 41 H 1.09007 * 109.47178 * 304.99672 * 21 20 11 42 42 H 1.09002 * 109.46658 * 299.99277 * 23 22 21 43 43 H 1.08996 * 109.47373 * 59.99844 * 23 22 21 44 44 H 1.09003 * 109.46724 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1264 -1.3074 6 6 2.1447 3.5692 -1.3072 7 6 3.6695 3.5715 -1.1812 8 6 4.0742 2.8875 0.1262 9 6 3.5648 1.4449 0.1259 10 1 3.9998 0.9061 -0.7158 11 7 3.9529 0.7897 1.3775 12 6 3.4747 1.2579 2.5722 13 1 3.3686 2.3207 2.7323 14 6 3.1264 0.3664 3.5777 15 7 2.8619 -0.8886 3.2819 16 14 3.0329 0.9478 5.3505 17 1 1.6583 1.4284 5.6420 18 1 3.3667 -0.1783 6.2590 19 1 3.9993 2.0558 5.5596 20 6 4.8525 -0.3662 1.3509 21 6 6.3019 0.1132 1.4510 22 8 6.5137 0.7278 2.7236 23 6 7.8431 1.2137 2.9204 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 2.0698 1.5874 -2.1492 30 1 0.5489 2.1252 -1.3970 31 1 1.7097 4.1080 -0.4654 32 1 1.8560 4.0566 -2.2384 33 1 4.0324 4.5994 -1.1806 34 1 4.1045 3.0327 -2.0230 35 1 3.6393 3.4263 0.9679 36 1 5.1605 2.8896 0.2162 37 1 2.6189 -1.5116 3.9846 38 1 4.6275 -1.0212 2.1928 39 1 4.7142 -0.9129 0.4182 40 1 6.9745 -0.7376 1.3421 41 1 6.5007 0.8369 0.6605 42 1 8.5478 0.3858 2.8419 43 1 8.0734 1.9603 2.1604 44 1 7.9219 1.6659 3.9091 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317185534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:09 Heat of formation + Delta-G solvation = -64.845627 kcal Electronic energy + Delta-G solvation = -21197.888053 eV Core-core repulsion = 18342.431691 eV Total energy + Delta-G solvation = -2855.456362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.08816 -38.49912 -36.25506 -34.52871 -33.14637 -31.18315 -29.87914 -28.74174 -27.12794 -25.55751 -24.51843 -23.11987 -21.72537 -21.26058 -20.54715 -18.14946 -17.36180 -16.67610 -16.53211 -15.93116 -15.59639 -15.47675 -15.25235 -14.99477 -14.53548 -14.44300 -13.93231 -13.56217 -13.38456 -13.30468 -13.02338 -12.72933 -12.55481 -12.35694 -12.28178 -12.18970 -12.10023 -12.01719 -11.69354 -11.64610 -11.48801 -11.35687 -10.98425 -10.79058 -10.57849 -10.29976 -10.21796 -8.29923 -7.60633 -5.18223 1.45735 1.50044 1.58444 2.63706 3.23612 3.48379 3.69630 3.99257 4.13473 4.28878 4.39975 4.43305 4.52091 4.55682 4.62557 4.63750 4.68599 4.73036 4.76691 4.82303 4.85339 4.86159 4.96590 5.00599 5.03709 5.09437 5.10570 5.23779 5.32788 5.39553 5.42718 5.45747 5.56031 5.65680 5.74888 5.83015 5.91393 5.92837 6.12100 6.57921 6.74113 7.39977 8.09646 8.60387 9.33651 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.015948 B = 0.009764 C = 0.007574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.317764 B = 2866.925508 C = 3695.894660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.116 4.116 3 C -0.076 4.076 4 H 0.036 0.964 5 C -0.108 4.108 6 C -0.113 4.113 7 C -0.108 4.108 8 C -0.117 4.117 9 C 0.177 3.823 10 H 0.050 0.950 11 N -0.578 5.578 12 C -0.211 4.211 13 H 0.035 0.965 14 C -0.022 4.022 15 N -0.909 5.909 16 Si 0.931 3.069 17 H -0.292 1.292 18 H -0.298 1.298 19 H -0.284 1.284 20 C 0.143 3.857 21 C 0.055 3.945 22 O -0.396 6.396 23 C 0.027 3.973 24 H 0.031 0.969 25 H 0.065 0.935 26 H 0.045 0.955 27 H 0.065 0.935 28 H 0.044 0.956 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.034 0.966 36 H 0.040 0.960 37 H 0.242 0.758 38 H 0.067 0.933 39 H 0.047 0.953 40 H 0.043 0.957 41 H 0.035 0.965 42 H 0.046 0.954 43 H 0.041 0.959 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.873 4.715 -9.922 11.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.154 4.154 3 C -0.096 4.096 4 H 0.055 0.945 5 C -0.145 4.145 6 C -0.151 4.151 7 C -0.146 4.146 8 C -0.156 4.156 9 C 0.070 3.930 10 H 0.068 0.932 11 N -0.297 5.297 12 C -0.342 4.342 13 H 0.053 0.947 14 C -0.219 4.219 15 N -0.555 5.555 16 Si 0.762 3.238 17 H -0.220 1.220 18 H -0.225 1.225 19 H -0.210 1.210 20 C 0.016 3.984 21 C -0.024 4.024 22 O -0.315 6.315 23 C -0.070 4.070 24 H 0.050 0.950 25 H 0.084 0.916 26 H 0.064 0.936 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.052 0.948 38 H 0.085 0.915 39 H 0.065 0.935 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.059 0.941 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.682 4.590 -9.679 11.043 hybrid contribution 0.289 0.029 1.436 1.465 sum 2.972 4.619 -8.243 9.905 Atomic orbital electron populations 1.21658 0.96295 1.00533 1.00725 1.21443 0.95317 0.97167 1.01454 1.21286 0.96614 0.95281 0.96446 0.94548 1.21611 1.00462 0.95684 0.96792 1.21498 0.95474 0.96551 1.01554 1.21480 0.96203 1.00124 0.96803 1.21836 0.98957 0.97563 0.97256 1.20579 0.92861 0.91955 0.87571 0.93187 1.43785 1.50800 1.33694 1.01403 1.18579 1.34638 0.89806 0.91217 0.94701 1.25352 0.99670 0.96455 1.00398 1.70013 1.49956 1.04379 1.31122 0.85856 0.76914 0.76986 0.84015 1.21999 1.22503 1.20980 1.20924 0.86316 0.90813 1.00321 1.23283 0.99449 0.95079 0.84540 1.88142 1.29520 1.77888 1.35910 1.22795 0.84391 0.98157 1.01638 0.94960 0.91593 0.93626 0.91650 0.93735 0.91733 0.91783 0.93443 0.90335 0.91672 0.91441 0.94675 0.94108 0.94815 0.91495 0.93450 0.93897 0.94644 0.93545 0.94078 0.90169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.67 9.67 71.98 0.70 -3.97 16 2 C -0.12 -4.61 5.32 30.59 0.16 -4.45 16 3 C -0.08 -2.89 1.50 -10.79 -0.02 -2.91 16 4 H 0.04 1.63 7.60 -2.39 -0.02 1.61 16 5 C -0.11 -3.12 4.96 30.60 0.15 -2.97 16 6 C -0.11 -2.98 5.92 30.59 0.18 -2.80 16 7 C -0.11 -2.96 5.92 30.59 0.18 -2.78 16 8 C -0.12 -4.23 5.21 30.59 0.16 -4.07 16 9 C 0.18 7.01 2.08 44.99 0.09 7.10 16 10 H 0.05 1.89 7.78 -2.39 -0.02 1.88 16 11 N -0.58 -27.28 1.49 -678.03 -1.01 -28.29 16 12 C -0.21 -11.36 7.62 84.04 0.64 -10.72 16 13 H 0.04 1.99 6.97 -2.91 -0.02 1.97 16 14 C -0.02 -1.24 4.97 84.86 0.42 -0.82 16 15 N -0.91 -52.11 10.87 21.65 0.24 -51.87 16 16 Si 0.93 46.86 29.60 68.60 2.03 48.89 16 17 H -0.29 -14.55 7.11 99.48 0.71 -13.84 16 18 H -0.30 -15.14 7.11 99.48 0.71 -14.44 16 19 H -0.28 -14.29 7.11 99.48 0.71 -13.58 16 20 C 0.14 6.56 5.70 86.38 0.49 7.05 16 21 C 0.06 2.20 6.28 71.98 0.45 2.65 16 22 O -0.40 -17.40 10.18 -148.98 -1.52 -18.91 16 23 C 0.03 0.87 11.01 113.37 1.25 2.12 16 24 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.07 1.90 6.56 -2.39 -0.02 1.88 16 26 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.06 3.24 6.85 -2.38 -0.02 3.23 16 28 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 1.73 6.57 -2.39 -0.02 1.72 16 31 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 34 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.03 1.44 7.10 -2.39 -0.02 1.42 16 36 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 37 H 0.24 13.81 8.31 -92.70 -0.77 13.04 16 38 H 0.07 3.61 5.53 -2.38 -0.01 3.60 16 39 H 0.05 2.01 7.90 -2.39 -0.02 1.99 16 40 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 Total: -1.00 -60.52 334.78 5.53 -54.99 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.92 Total: 11.77 kcal Atomic # 6 Polarization: -21.43 SS G_CDS: 4.86 Total: -16.57 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -0.78 Total: -80.16 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -1.52 Total: -18.91 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Total: -60.52 5.53 -54.99 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317185534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.856 kcal (2) G-P(sol) polarization free energy of solvation -60.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds