Wall clock time and date at job start Mon Mar 30 2020 07:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46788 * 2 1 4 4 H 1.08992 * 109.47407 * 55.00201 * 3 2 1 5 5 C 1.52999 * 109.47334 * 295.00149 * 3 2 1 6 6 C 1.52998 * 109.47334 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47279 * 60.00130 * 6 5 3 8 8 C 1.52999 * 109.46831 * 300.00177 * 7 6 5 9 9 C 1.53003 * 109.47155 * 60.00139 * 8 7 6 10 10 H 1.09000 * 109.47268 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47422 * 59.99553 * 9 8 7 12 12 C 1.36936 * 120.00065 * 292.65660 * 11 9 8 13 13 H 1.07998 * 120.00077 * 17.52707 * 12 11 9 14 14 C 1.38817 * 119.99677 * 197.53138 * 12 11 9 15 15 N 1.31609 * 120.00250 * 323.03782 * 14 12 11 16 16 Si 1.86799 * 119.99673 * 143.04086 * 14 12 11 17 17 H 1.48499 * 109.47419 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47287 * 119.99818 * 16 14 12 19 19 H 1.48507 * 109.47007 * 239.99709 * 16 14 12 20 20 C 1.46500 * 120.00042 * 112.65484 * 11 9 8 21 21 C 1.53005 * 109.47100 * 92.62641 * 20 11 9 22 22 O 1.42900 * 109.46789 * 65.00243 * 21 20 11 23 23 C 1.42900 * 113.99660 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47654 * 60.00237 * 1 2 3 25 25 H 1.09003 * 109.46754 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47396 * 299.99344 * 1 2 3 27 27 H 1.09006 * 109.46638 * 240.00360 * 2 1 3 28 28 H 1.08995 * 109.47833 * 120.00273 * 2 1 3 29 29 H 1.09003 * 109.47614 * 300.00297 * 5 3 2 30 30 H 1.09004 * 109.46957 * 60.00176 * 5 3 2 31 31 H 1.09002 * 109.47511 * 300.00085 * 6 5 3 32 32 H 1.09000 * 109.47448 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.47117 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46886 * 59.99572 * 7 6 5 35 35 H 1.08994 * 109.47640 * 299.99671 * 8 7 6 36 36 H 1.09004 * 109.46957 * 179.97438 * 8 7 6 37 37 H 0.96999 * 120.00387 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47494 * 212.63348 * 20 11 9 39 39 H 1.09007 * 109.47048 * 332.63435 * 20 11 9 40 40 H 1.08998 * 109.46833 * 185.00042 * 21 20 11 41 41 H 1.08998 * 109.47255 * 305.00268 * 21 20 11 42 42 H 1.09000 * 109.46953 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47579 * 300.00060 * 23 22 21 44 44 H 1.08997 * 109.46950 * 60.00485 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 2.1456 3.5689 -1.3076 7 6 3.6705 3.5703 -1.1822 8 6 4.0753 2.8862 0.1251 9 6 3.5648 1.4438 0.1253 10 1 3.8528 0.9566 1.0568 11 7 4.1484 0.7191 -1.0062 12 6 3.8019 1.0563 -2.2874 13 1 3.3371 2.0103 -2.4878 14 6 4.0480 0.1717 -3.3285 15 7 5.1419 -0.5601 -3.3257 16 14 2.8266 0.0202 -4.7337 17 1 1.6875 0.9441 -4.5013 18 1 3.4963 0.3711 -6.0118 19 1 2.3246 -1.3757 -4.8049 20 6 5.1028 -0.3664 -0.7671 21 6 4.3539 -1.6992 -0.7039 22 8 3.7735 -1.9802 -1.9791 23 6 3.0477 -3.2102 -2.0289 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.0697 1.5876 -2.1492 30 1 0.5487 2.1252 -1.3968 31 1 1.7113 4.1082 -0.4657 32 1 1.8576 4.0561 -2.2391 33 1 4.0340 4.5978 -1.1820 34 1 4.1047 3.0309 -2.0241 35 1 3.6411 3.4254 0.9670 36 1 5.1617 2.8868 0.2142 37 1 5.3140 -1.1779 -4.0533 38 1 5.8299 -0.3962 -1.5785 39 1 5.6191 -0.1947 0.1774 40 1 5.0501 -2.4947 -0.4383 41 1 3.5672 -1.6386 0.0480 42 1 2.6381 -3.3501 -3.0293 43 1 3.7169 -4.0369 -1.7909 44 1 2.2338 -3.1813 -1.3044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317185538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:12 Heat of formation + Delta-G solvation = 12.586270 kcal Electronic energy + Delta-G solvation = -22228.829957 eV Core-core repulsion = 19376.731294 eV Total energy + Delta-G solvation = -2852.098663 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.12989 -36.55788 -33.84308 -33.12825 -31.34604 -29.27222 -28.39847 -27.44879 -25.37349 -23.79096 -22.92521 -21.30319 -20.39129 -19.81725 -18.45282 -16.78260 -15.25234 -14.83024 -14.62097 -14.22998 -14.11363 -13.75104 -13.59993 -13.03150 -12.88753 -12.72096 -12.50828 -11.89414 -11.51330 -11.39401 -11.30813 -11.08726 -10.90043 -10.69676 -10.58567 -10.41631 -10.31329 -10.24135 -10.08176 -9.86790 -9.69635 -9.60315 -9.16221 -8.96580 -8.54238 -8.38085 -7.52476 -6.55607 -5.62971 -2.77158 3.54749 3.64570 3.67777 4.69894 5.10751 5.38261 5.53543 5.57373 5.68794 5.83847 5.90884 5.96750 6.01168 6.03204 6.06457 6.25067 6.31701 6.34445 6.34818 6.43026 6.48389 6.51175 6.53598 6.58519 6.60969 6.73281 6.75261 6.81250 6.88932 6.91978 6.96027 7.15952 7.24461 7.32695 7.36492 7.47198 7.79387 7.89876 8.11025 8.46793 8.71621 9.43021 10.14474 10.62632 11.35886 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.011842 C = 0.010813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.138565 B = 2363.950661 C = 2588.879206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.111 4.111 3 C -0.076 4.076 4 H 0.038 0.962 5 C -0.161 4.161 6 C -0.108 4.108 7 C -0.141 4.141 8 C -0.121 4.121 9 C 0.182 3.818 10 H 0.043 0.957 11 N -0.579 5.579 12 C -0.306 4.306 13 H 0.118 0.882 14 C 0.060 3.940 15 N -0.836 5.836 16 Si 0.847 3.153 17 H -0.280 1.280 18 H -0.303 1.303 19 H -0.290 1.290 20 C 0.137 3.863 21 C 0.057 3.943 22 O -0.313 6.313 23 C 0.021 3.979 24 H 0.053 0.947 25 H 0.039 0.961 26 H 0.040 0.960 27 H 0.089 0.911 28 H 0.038 0.962 29 H 0.144 0.856 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.044 0.956 33 H 0.030 0.970 34 H 0.118 0.882 35 H 0.036 0.964 36 H 0.049 0.951 37 H 0.251 0.749 38 H 0.129 0.871 39 H 0.016 0.984 40 H 0.010 0.990 41 H 0.019 0.981 42 H 0.065 0.935 43 H 0.019 0.981 44 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.661 0.551 5.872 6.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.096 4.096 4 H 0.056 0.944 5 C -0.197 4.197 6 C -0.146 4.146 7 C -0.178 4.178 8 C -0.161 4.161 9 C 0.074 3.926 10 H 0.061 0.939 11 N -0.300 5.300 12 C -0.431 4.431 13 H 0.135 0.865 14 C -0.142 4.142 15 N -0.476 5.476 16 Si 0.676 3.324 17 H -0.206 1.206 18 H -0.231 1.231 19 H -0.217 1.217 20 C 0.011 3.989 21 C -0.023 4.023 22 O -0.230 6.230 23 C -0.077 4.077 24 H 0.072 0.928 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.057 0.943 29 H 0.161 0.839 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.136 0.864 35 H 0.054 0.946 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.146 0.854 39 H 0.034 0.966 40 H 0.028 0.972 41 H 0.037 0.963 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -3.531 0.567 5.614 6.656 hybrid contribution -1.076 -0.581 -0.274 1.254 sum -4.607 -0.014 5.340 7.052 Atomic orbital electron populations 1.21825 0.97932 1.00025 1.00856 1.21514 0.93448 0.97602 1.02276 1.21243 0.96898 0.94784 0.96654 0.94367 1.22773 0.98121 0.95875 1.02954 1.21393 0.96517 0.97530 0.99121 1.22091 0.95650 0.98552 1.01510 1.21936 0.99616 0.98088 0.96450 1.20277 0.91219 0.90905 0.90195 0.93911 1.43815 1.48086 1.36910 1.01204 1.19591 1.38006 1.01970 0.83505 0.86515 1.24547 0.96313 0.96653 0.96670 1.69834 1.21077 1.25806 1.30891 0.87109 0.84776 0.77753 0.82810 1.20565 1.23083 1.21722 1.21504 0.93251 0.84537 0.99646 1.23158 0.94926 0.98988 0.85244 1.88650 1.68732 1.35040 1.30555 1.22622 0.95091 0.89496 1.00493 0.92780 0.94160 0.94130 0.89262 0.94295 0.83936 0.95295 0.94532 0.93724 0.95139 0.86384 0.94575 0.93216 0.93821 0.85417 0.96634 0.97157 0.96328 0.91600 0.96239 0.96122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.67 37.16 0.36 -2.07 16 2 C -0.11 -2.06 4.31 -26.73 -0.12 -2.18 16 3 C -0.08 -1.42 1.95 -90.62 -0.18 -1.60 16 4 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 5 C -0.16 -3.16 4.58 -26.73 -0.12 -3.28 16 6 C -0.11 -1.97 5.60 -26.73 -0.15 -2.12 16 7 C -0.14 -2.67 5.56 -26.73 -0.15 -2.82 16 8 C -0.12 -2.25 5.64 -26.73 -0.15 -2.40 16 9 C 0.18 3.58 2.70 -67.93 -0.18 3.40 16 10 H 0.04 0.82 7.83 -51.93 -0.41 0.42 16 11 N -0.58 -12.84 1.81 -165.67 -0.30 -13.14 16 12 C -0.31 -7.37 5.12 -15.06 -0.08 -7.45 16 13 H 0.12 2.79 2.63 -52.49 -0.14 2.66 16 14 C 0.06 1.54 3.34 -17.43 -0.06 1.48 16 15 N -0.84 -21.96 8.56 55.49 0.47 -21.48 16 16 Si 0.85 20.78 29.19 -169.99 -4.96 15.82 16 17 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 18 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 19 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 20 C 0.14 3.05 5.64 -4.04 -0.02 3.03 16 21 C 0.06 1.20 5.74 37.16 0.21 1.41 16 22 O -0.31 -7.17 5.99 -35.23 -0.21 -7.38 16 23 C 0.02 0.41 11.01 101.05 1.11 1.52 16 24 H 0.05 0.90 6.56 -51.93 -0.34 0.56 16 25 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 1.95 6.39 -51.93 -0.33 1.61 16 28 H 0.04 0.70 7.64 -51.93 -0.40 0.30 16 29 H 0.14 3.24 3.40 -51.94 -0.18 3.07 16 30 H 0.03 0.54 6.57 -51.93 -0.34 0.20 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.12 2.57 4.46 -51.93 -0.23 2.34 16 35 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 38 H 0.13 3.25 5.39 -51.93 -0.28 2.97 16 39 H 0.02 0.32 7.93 -51.93 -0.41 -0.09 16 40 H 0.01 0.21 8.14 -51.93 -0.42 -0.21 16 41 H 0.02 0.38 6.41 -51.93 -0.33 0.05 16 42 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 308.96 15.07 4.66 4.66 Total: -1.00 -24.89 308.96 -7.46 -32.35 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.60 Total: 2.25 kcal Atomic # 6 Polarization: -13.56 SS G_CDS: 0.48 Total: -13.08 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: 0.17 Total: -34.62 kcal Atomic # 8 Polarization: -7.17 SS G_CDS: -0.21 Total: -7.38 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.96 Total: 15.82 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -24.89 -7.46 -32.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317185538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.934 kcal (2) G-P(sol) polarization free energy of solvation -24.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds