Wall clock time and date at job start Mon Mar 30 2020 07:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.46788 * 2 1 4 4 H 1.08992 * 109.47407 * 55.00201 * 3 2 1 5 5 C 1.52999 * 109.47334 * 295.00149 * 3 2 1 6 6 C 1.52998 * 109.47334 * 180.02562 * 5 3 2 7 7 C 1.53005 * 109.47279 * 60.00130 * 6 5 3 8 8 C 1.52999 * 109.46831 * 300.00177 * 7 6 5 9 9 C 1.53003 * 109.47155 * 60.00139 * 8 7 6 10 10 H 1.09000 * 109.47268 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47422 * 59.99553 * 9 8 7 12 12 C 1.36936 * 120.00065 * 292.65660 * 11 9 8 13 13 H 1.07998 * 120.00077 * 17.52707 * 12 11 9 14 14 C 1.38817 * 119.99677 * 197.53138 * 12 11 9 15 15 N 1.31609 * 120.00250 * 323.03782 * 14 12 11 16 16 Si 1.86799 * 119.99673 * 143.04086 * 14 12 11 17 17 H 1.48499 * 109.47419 * 359.97438 * 16 14 12 18 18 H 1.48503 * 109.47287 * 119.99818 * 16 14 12 19 19 H 1.48507 * 109.47007 * 239.99709 * 16 14 12 20 20 C 1.46500 * 120.00042 * 112.65484 * 11 9 8 21 21 C 1.53005 * 109.47100 * 92.62641 * 20 11 9 22 22 O 1.42900 * 109.46789 * 65.00243 * 21 20 11 23 23 C 1.42900 * 113.99660 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.47654 * 60.00237 * 1 2 3 25 25 H 1.09003 * 109.46754 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47396 * 299.99344 * 1 2 3 27 27 H 1.09006 * 109.46638 * 240.00360 * 2 1 3 28 28 H 1.08995 * 109.47833 * 120.00273 * 2 1 3 29 29 H 1.09003 * 109.47614 * 300.00297 * 5 3 2 30 30 H 1.09004 * 109.46957 * 60.00176 * 5 3 2 31 31 H 1.09002 * 109.47511 * 300.00085 * 6 5 3 32 32 H 1.09000 * 109.47448 * 179.97438 * 6 5 3 33 33 H 1.08994 * 109.47117 * 180.02562 * 7 6 5 34 34 H 1.09002 * 109.46886 * 59.99572 * 7 6 5 35 35 H 1.08994 * 109.47640 * 299.99671 * 8 7 6 36 36 H 1.09004 * 109.46957 * 179.97438 * 8 7 6 37 37 H 0.96999 * 120.00387 * 180.02562 * 15 14 12 38 38 H 1.08996 * 109.47494 * 212.63348 * 20 11 9 39 39 H 1.09007 * 109.47048 * 332.63435 * 20 11 9 40 40 H 1.08998 * 109.46833 * 185.00042 * 21 20 11 41 41 H 1.08998 * 109.47255 * 305.00268 * 21 20 11 42 42 H 1.09000 * 109.46953 * 179.97438 * 23 22 21 43 43 H 1.08998 * 109.47579 * 300.00060 * 23 22 21 44 44 H 1.08997 * 109.46950 * 60.00485 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1266 -1.3073 6 6 2.1456 3.5689 -1.3076 7 6 3.6705 3.5703 -1.1822 8 6 4.0753 2.8862 0.1251 9 6 3.5648 1.4438 0.1253 10 1 3.8528 0.9566 1.0568 11 7 4.1484 0.7191 -1.0062 12 6 3.8019 1.0563 -2.2874 13 1 3.3371 2.0103 -2.4878 14 6 4.0480 0.1717 -3.3285 15 7 5.1419 -0.5601 -3.3257 16 14 2.8266 0.0202 -4.7337 17 1 1.6875 0.9441 -4.5013 18 1 3.4963 0.3711 -6.0118 19 1 2.3246 -1.3757 -4.8049 20 6 5.1028 -0.3664 -0.7671 21 6 4.3539 -1.6992 -0.7039 22 8 3.7735 -1.9802 -1.9791 23 6 3.0477 -3.2102 -2.0289 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5137 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 2.0697 1.5876 -2.1492 30 1 0.5487 2.1252 -1.3968 31 1 1.7113 4.1082 -0.4657 32 1 1.8576 4.0561 -2.2391 33 1 4.0340 4.5978 -1.1820 34 1 4.1047 3.0309 -2.0241 35 1 3.6411 3.4254 0.9670 36 1 5.1617 2.8868 0.2142 37 1 5.3140 -1.1779 -4.0533 38 1 5.8299 -0.3962 -1.5785 39 1 5.6191 -0.1947 0.1774 40 1 5.0501 -2.4947 -0.4383 41 1 3.5672 -1.6386 0.0480 42 1 2.6381 -3.3501 -3.0293 43 1 3.7169 -4.0369 -1.7909 44 1 2.2338 -3.1813 -1.3044 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317185538.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:12 Heat of formation + Delta-G solvation = 1.559271 kcal Electronic energy + Delta-G solvation = -22229.308123 eV Core-core repulsion = 19376.731294 eV Total energy + Delta-G solvation = -2852.576830 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72319 -38.21820 -35.55440 -34.58880 -33.12945 -30.88362 -29.97615 -29.06581 -26.99876 -25.48458 -24.40195 -22.91775 -22.09836 -21.29317 -20.07602 -18.58072 -16.91445 -16.39282 -16.25794 -16.08971 -15.68515 -15.29773 -15.18789 -14.81685 -14.44319 -14.25710 -13.90423 -13.36698 -13.13763 -13.07841 -12.88678 -12.67964 -12.64794 -12.54539 -12.11716 -12.06084 -11.92003 -11.85902 -11.77538 -11.53488 -11.33669 -11.21652 -10.69390 -10.48250 -10.29756 -10.02646 -9.35134 -8.36756 -7.54411 -4.65498 1.53701 1.64339 1.65422 2.77476 3.49707 3.56015 3.84682 4.08075 4.20368 4.33444 4.47576 4.49636 4.56147 4.57568 4.61367 4.75526 4.79841 4.83930 4.85562 4.90159 4.94859 4.99374 5.07101 5.13350 5.13671 5.20812 5.25046 5.27412 5.28008 5.34827 5.50246 5.65168 5.72559 5.79072 5.81207 5.92730 6.03492 6.12724 6.27605 6.72435 6.97540 7.54923 8.31506 8.75105 9.42375 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017505 B = 0.011842 C = 0.010813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.138565 B = 2363.950661 C = 2588.879206 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.106 4.106 3 C -0.072 4.072 4 H 0.059 0.941 5 C -0.159 4.159 6 C -0.104 4.104 7 C -0.138 4.138 8 C -0.117 4.117 9 C 0.176 3.824 10 H 0.051 0.949 11 N -0.584 5.584 12 C -0.275 4.275 13 H 0.122 0.878 14 C 0.026 3.974 15 N -0.855 5.855 16 Si 0.870 3.130 17 H -0.278 1.278 18 H -0.318 1.318 19 H -0.306 1.306 20 C 0.135 3.865 21 C 0.064 3.936 22 O -0.342 6.342 23 C 0.021 3.979 24 H 0.045 0.955 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.054 0.946 28 H 0.044 0.956 29 H 0.109 0.891 30 H 0.036 0.964 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.084 0.916 35 H 0.061 0.939 36 H 0.042 0.958 37 H 0.238 0.762 38 H 0.098 0.902 39 H 0.032 0.968 40 H 0.019 0.981 41 H 0.026 0.974 42 H 0.058 0.942 43 H 0.036 0.964 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.849 1.578 8.128 9.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.144 4.144 3 C -0.092 4.092 4 H 0.078 0.922 5 C -0.195 4.195 6 C -0.142 4.142 7 C -0.175 4.175 8 C -0.156 4.156 9 C 0.069 3.931 10 H 0.070 0.930 11 N -0.305 5.305 12 C -0.402 4.402 13 H 0.139 0.861 14 C -0.173 4.173 15 N -0.498 5.498 16 Si 0.702 3.298 17 H -0.203 1.203 18 H -0.248 1.248 19 H -0.234 1.234 20 C 0.009 3.991 21 C -0.015 4.015 22 O -0.259 6.259 23 C -0.077 4.077 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.126 0.874 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.049 0.951 38 H 0.115 0.885 39 H 0.050 0.950 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -4.738 1.609 7.889 9.342 hybrid contribution -0.737 -0.844 -0.893 1.432 sum -5.475 0.765 6.997 8.917 Atomic orbital electron populations 1.21764 0.96122 1.00841 1.01389 1.21409 0.95041 0.97143 1.00775 1.21212 0.96072 0.95038 0.96829 0.92228 1.22599 0.98458 0.96502 1.01970 1.21367 0.95830 0.96748 1.00253 1.21957 0.96147 0.99072 1.00329 1.21872 0.99303 0.97383 0.97087 1.20488 0.91896 0.91335 0.89396 0.93039 1.43929 1.48233 1.37032 1.01354 1.19855 1.34881 1.01286 0.84147 0.86136 1.24763 0.97326 0.97810 0.97417 1.69978 1.21936 1.27028 1.30848 0.86683 0.84635 0.76692 0.81785 1.20347 1.24768 1.23394 1.21385 0.93047 0.85466 0.99179 1.23042 0.95039 0.98504 0.84925 1.88611 1.69299 1.36563 1.31427 1.22677 0.95570 0.88907 1.00544 0.93578 0.93349 0.92144 0.92756 0.93759 0.87352 0.94493 0.92349 0.93457 0.93473 0.89766 0.92049 0.93958 0.95082 0.88468 0.95000 0.96309 0.95610 0.92304 0.94567 0.94838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.27 9.67 71.98 0.70 -3.57 16 2 C -0.11 -3.69 4.31 30.59 0.13 -3.55 16 3 C -0.07 -2.46 1.95 -10.79 -0.02 -2.48 16 4 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 5 C -0.16 -5.85 4.58 30.59 0.14 -5.71 16 6 C -0.10 -3.47 5.60 30.59 0.17 -3.30 16 7 C -0.14 -4.88 5.56 30.60 0.17 -4.71 16 8 C -0.12 -3.97 5.64 30.59 0.17 -3.80 16 9 C 0.18 6.45 2.70 45.00 0.12 6.57 16 10 H 0.05 1.81 7.83 -2.39 -0.02 1.79 16 11 N -0.58 -25.34 1.81 -678.04 -1.23 -26.57 16 12 C -0.28 -13.24 5.12 84.03 0.43 -12.81 16 13 H 0.12 5.73 2.63 -2.91 -0.01 5.72 16 14 C 0.03 1.35 3.34 84.86 0.28 1.63 16 15 N -0.85 -46.16 8.56 21.65 0.19 -45.97 16 16 Si 0.87 43.60 29.19 68.60 2.00 45.60 16 17 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 18 H -0.32 -16.51 7.11 99.48 0.71 -15.80 16 19 H -0.31 -15.89 7.11 99.48 0.71 -15.18 16 20 C 0.14 5.97 5.64 86.38 0.49 6.46 16 21 C 0.06 2.67 5.74 71.98 0.41 3.08 16 22 O -0.34 -15.67 5.99 -148.98 -0.89 -16.57 16 23 C 0.02 0.79 11.01 113.37 1.25 2.04 16 24 H 0.05 1.43 6.56 -2.39 -0.02 1.41 16 25 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 2.30 6.39 -2.38 -0.02 2.28 16 28 H 0.04 1.47 7.64 -2.39 -0.02 1.45 16 29 H 0.11 4.82 3.40 -2.40 -0.01 4.81 16 30 H 0.04 1.29 6.57 -2.39 -0.02 1.27 16 31 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.08 3.59 4.46 -2.39 -0.01 3.58 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 37 H 0.24 13.10 8.31 -92.71 -0.77 12.33 16 38 H 0.10 5.01 5.39 -2.39 -0.01 5.00 16 39 H 0.03 1.28 7.93 -2.38 -0.02 1.26 16 40 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.03 1.02 6.41 -2.39 -0.02 1.01 16 42 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 43 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 44 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -53.12 308.96 5.47 -47.65 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 0.96 Total: 16.02 kcal Atomic # 6 Polarization: -24.60 SS G_CDS: 4.44 Total: -20.16 kcal Atomic # 7 Polarization: -71.50 SS G_CDS: -1.04 Total: -72.55 kcal Atomic # 8 Polarization: -15.67 SS G_CDS: -0.89 Total: -16.57 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.00 Total: 45.60 kcal Total: -53.12 5.47 -47.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317185538.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.209 kcal (2) G-P(sol) polarization free energy of solvation -53.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds