Wall clock time and date at job start Mon Mar 30 2020 07:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47339 * 2 1 4 4 H 1.09004 * 109.46696 * 299.76532 * 3 2 1 5 5 C 1.53000 * 109.47097 * 59.76147 * 3 2 1 6 6 C 1.52994 * 109.47174 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47363 * 300.00098 * 6 5 3 8 8 C 1.53000 * 109.47055 * 59.99829 * 7 6 5 9 9 C 1.52995 * 109.47531 * 300.00402 * 8 7 6 10 10 H 1.08993 * 109.47635 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.46962 * 299.99708 * 9 8 7 12 12 C 1.36935 * 119.99840 * 103.95171 * 11 9 8 13 13 H 1.07991 * 120.00244 * 42.56496 * 12 11 9 14 14 C 1.38814 * 119.99962 * 222.56872 * 12 11 9 15 15 N 1.31616 * 119.99970 * 191.47139 * 14 12 11 16 16 Si 1.86807 * 119.99845 * 11.46356 * 14 12 11 17 17 H 1.48495 * 109.47306 * 264.64507 * 16 14 12 18 18 H 1.48499 * 109.47189 * 24.64938 * 16 14 12 19 19 H 1.48502 * 109.46820 * 144.64965 * 16 14 12 20 20 C 1.46496 * 119.99735 * 283.95548 * 11 9 8 21 21 C 1.53001 * 109.46734 * 267.36946 * 20 11 9 22 22 O 1.42900 * 109.46790 * 65.25072 * 21 20 11 23 23 C 1.42898 * 113.99786 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.46903 * 299.99610 * 1 2 3 25 25 H 1.08999 * 109.47382 * 59.99553 * 1 2 3 26 26 H 1.08996 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47216 * 239.99987 * 2 1 3 28 28 H 1.08998 * 109.47794 * 120.00103 * 2 1 3 29 29 H 1.08995 * 109.47546 * 300.00717 * 5 3 2 30 30 H 1.09005 * 109.46959 * 60.00041 * 5 3 2 31 31 H 1.08998 * 109.47442 * 60.00457 * 6 5 3 32 32 H 1.09003 * 109.47157 * 180.02562 * 6 5 3 33 33 H 1.09005 * 109.47383 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47546 * 300.00204 * 7 6 5 35 35 H 1.09003 * 109.47354 * 179.97438 * 8 7 6 36 36 H 1.09005 * 109.46959 * 60.00398 * 8 7 6 37 37 H 0.97010 * 119.99669 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47481 * 27.37297 * 20 11 9 39 39 H 1.09000 * 109.47121 * 147.37873 * 20 11 9 40 40 H 1.09001 * 109.46858 * 185.24512 * 21 20 11 41 41 H 1.08990 * 109.47434 * 305.25004 * 21 20 11 42 42 H 1.08997 * 109.47227 * 60.00265 * 23 22 21 43 43 H 1.09001 * 109.47150 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47439 * 299.99840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6801 1.9551 -0.8921 5 6 1.5252 2.1655 1.2462 6 6 2.0347 3.6081 1.2459 7 6 3.5646 3.6087 1.2516 8 6 4.0795 2.8857 0.0054 9 6 3.5700 1.4431 0.0056 10 1 3.9364 0.9281 -0.8824 11 7 4.0542 0.7544 1.2046 12 6 3.2041 0.5268 2.2537 13 1 2.1954 0.1888 2.0679 14 6 3.6389 0.7307 3.5562 15 7 2.9125 0.3031 4.5670 16 14 5.2551 1.6120 3.8741 17 1 6.3375 0.6114 4.0538 18 1 5.5771 2.4875 2.7188 19 1 5.1353 2.4375 5.1027 20 6 5.4478 0.3093 1.2811 21 6 5.5489 -1.1367 0.7913 22 8 5.2147 -1.1938 -0.5969 23 6 5.2787 -2.5070 -1.1566 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.4352 2.1655 1.2421 30 1 1.8850 1.6528 2.1384 31 1 1.6745 4.1205 0.3539 32 1 1.6682 4.1231 2.1340 33 1 3.9276 4.6365 1.2518 34 1 3.9249 3.0963 2.1436 35 1 5.1695 2.8865 0.0091 36 1 3.7193 3.3981 -0.8868 37 1 3.2166 0.4453 5.4772 38 1 6.0687 0.9494 0.6544 39 1 5.7918 0.3679 2.3137 40 1 6.5669 -1.4987 0.9351 41 1 4.8578 -1.7612 1.3573 42 1 4.5823 -3.1603 -0.6310 43 1 5.0109 -2.4655 -2.2124 44 1 6.2912 -2.8971 -1.0532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317185542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:15 Heat of formation + Delta-G solvation = -12.273891 kcal Electronic energy + Delta-G solvation = -21850.955115 eV Core-core repulsion = 18997.778434 eV Total energy + Delta-G solvation = -2853.176681 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.16717 -37.17166 -34.11377 -33.20290 -31.78517 -29.61778 -28.66693 -27.47988 -25.74564 -23.96315 -22.93108 -21.91624 -20.44355 -19.85021 -18.33951 -16.92508 -15.99222 -15.41752 -14.99619 -14.47722 -14.35586 -14.17141 -13.72539 -13.11305 -12.83105 -12.58090 -12.47574 -12.31507 -11.92620 -11.83570 -11.58068 -11.29105 -11.00813 -10.97127 -10.91657 -10.64328 -10.38043 -10.30453 -10.28298 -10.07884 -9.58019 -9.35558 -9.12887 -9.07551 -8.87243 -8.69680 -8.14590 -6.52158 -5.92059 -3.40174 3.27442 3.46233 3.48798 4.41256 4.49849 5.03081 5.28739 5.59191 5.60458 5.67780 5.70600 5.84376 5.92457 5.95174 6.02272 6.04550 6.07807 6.10509 6.15837 6.29119 6.40177 6.43182 6.47616 6.54895 6.57603 6.61129 6.62909 6.69275 6.74933 6.83807 6.86742 7.01837 7.19049 7.28998 7.34279 7.38133 7.44445 7.77030 8.01952 8.15358 8.46781 9.06867 9.71308 10.21216 11.16965 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.013001 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.927998 B = 2153.245596 C = 2894.951229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.064 4.064 4 H 0.043 0.957 5 C -0.167 4.167 6 C -0.102 4.102 7 C -0.117 4.117 8 C -0.131 4.131 9 C 0.185 3.815 10 H 0.049 0.951 11 N -0.594 5.594 12 C -0.259 4.259 13 H 0.114 0.886 14 C 0.029 3.971 15 N -0.907 5.907 16 Si 0.875 3.125 17 H -0.292 1.292 18 H -0.256 1.256 19 H -0.306 1.306 20 C 0.143 3.857 21 C 0.045 3.955 22 O -0.379 6.379 23 C 0.034 3.966 24 H 0.057 0.943 25 H 0.037 0.963 26 H 0.040 0.960 27 H 0.042 0.958 28 H 0.103 0.897 29 H 0.032 0.968 30 H 0.158 0.842 31 H 0.033 0.967 32 H 0.044 0.956 33 H 0.031 0.969 34 H 0.084 0.916 35 H 0.044 0.956 36 H 0.042 0.958 37 H 0.262 0.738 38 H 0.048 0.952 39 H 0.057 0.943 40 H 0.027 0.973 41 H 0.056 0.944 42 H 0.036 0.964 43 H 0.075 0.925 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.772 -0.222 -8.587 8.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C -0.083 4.083 4 H 0.061 0.939 5 C -0.203 4.203 6 C -0.140 4.140 7 C -0.154 4.154 8 C -0.170 4.170 9 C 0.078 3.922 10 H 0.067 0.933 11 N -0.317 5.317 12 C -0.387 4.387 13 H 0.130 0.870 14 C -0.171 4.171 15 N -0.549 5.549 16 Si 0.707 3.293 17 H -0.221 1.221 18 H -0.181 1.181 19 H -0.234 1.234 20 C 0.017 3.983 21 C -0.034 4.034 22 O -0.297 6.297 23 C -0.063 4.063 24 H 0.076 0.924 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.060 0.940 28 H 0.121 0.879 29 H 0.051 0.949 30 H 0.174 0.826 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.049 0.951 34 H 0.102 0.898 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.054 0.946 43 H 0.093 0.907 44 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 1.674 -0.048 -8.521 8.684 hybrid contribution 1.097 0.282 0.372 1.192 sum 2.771 0.234 -8.149 8.611 Atomic orbital electron populations 1.21813 0.97774 1.00091 1.00906 1.21884 0.93839 0.97437 1.03376 1.20945 0.94839 0.95334 0.97180 0.93890 1.22898 0.97591 0.95366 1.04403 1.21335 0.95747 0.98033 0.98866 1.21550 0.95813 0.97682 1.00375 1.22046 0.99252 0.98846 0.96876 1.20435 0.92653 0.89535 0.89528 0.93326 1.43971 1.06681 1.64799 1.16209 1.19158 0.97615 1.38317 0.83600 0.86959 1.25626 0.97249 0.98181 0.96069 1.69752 1.38763 1.47757 0.98649 0.87057 0.84683 0.80448 0.77086 1.22128 1.18057 1.23440 1.21149 0.88093 0.91176 0.97854 1.23364 0.96971 1.01591 0.81512 1.87917 1.90360 1.26689 1.24765 1.22609 0.99047 0.86104 0.98584 0.92446 0.94380 0.94095 0.93952 0.87887 0.94896 0.82555 0.94829 0.93746 0.95063 0.89755 0.93702 0.93914 0.92756 0.93399 0.92517 0.95480 0.92585 0.94580 0.90691 0.95271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.49 9.55 37.16 0.36 -2.14 16 2 C -0.13 -2.42 5.05 -26.73 -0.14 -2.56 16 3 C -0.06 -1.23 1.99 -90.62 -0.18 -1.41 16 4 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 5 C -0.17 -3.39 4.34 -26.73 -0.12 -3.51 16 6 C -0.10 -1.97 5.92 -26.74 -0.16 -2.13 16 7 C -0.12 -2.34 5.66 -26.73 -0.15 -2.49 16 8 C -0.13 -2.49 5.51 -26.73 -0.15 -2.63 16 9 C 0.18 3.68 2.49 -67.93 -0.17 3.51 16 10 H 0.05 0.99 7.21 -51.93 -0.37 0.61 16 11 N -0.59 -12.91 1.40 -171.97 -0.24 -13.15 16 12 C -0.26 -6.32 4.86 -15.06 -0.07 -6.39 16 13 H 0.11 2.90 3.62 -52.49 -0.19 2.71 16 14 C 0.03 0.75 5.27 -17.43 -0.09 0.66 16 15 N -0.91 -25.78 13.97 55.49 0.78 -25.00 16 16 Si 0.87 21.14 22.63 -169.99 -3.85 17.29 16 17 H -0.29 -7.02 6.87 56.52 0.39 -6.64 16 18 H -0.26 -5.93 5.83 56.52 0.33 -5.60 16 19 H -0.31 -7.73 7.11 56.52 0.40 -7.33 16 20 C 0.14 2.99 4.70 -4.04 -0.02 2.97 16 21 C 0.04 0.84 6.27 37.16 0.23 1.07 16 22 O -0.38 -6.89 9.64 -35.23 -0.34 -7.23 16 23 C 0.03 0.48 11.01 101.05 1.11 1.59 16 24 H 0.06 1.00 6.42 -51.93 -0.33 0.67 16 25 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.10 2.25 4.72 -51.93 -0.25 2.01 16 29 H 0.03 0.64 6.42 -51.93 -0.33 0.30 16 30 H 0.16 3.75 3.47 -62.94 -0.22 3.53 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 1.91 3.23 -51.93 -0.17 1.74 16 35 H 0.04 0.85 7.53 -51.93 -0.39 0.46 16 36 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.05 0.95 7.41 -51.93 -0.38 0.56 16 39 H 0.06 1.27 2.99 -51.93 -0.16 1.12 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 42 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.03 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 307.26 15.07 4.63 4.63 Total: -1.00 -26.37 307.26 -6.07 -32.44 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -7.51 Total: 4.47 kcal Atomic # 6 Polarization: -13.91 SS G_CDS: 0.46 Total: -13.45 kcal Atomic # 7 Polarization: -38.69 SS G_CDS: 0.53 Total: -38.15 kcal Atomic # 8 Polarization: -6.89 SS G_CDS: -0.34 Total: -7.23 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -3.85 Total: 17.29 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -26.37 -6.07 -32.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317185542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.167 kcal (2) G-P(sol) polarization free energy of solvation -26.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds