Wall clock time and date at job start Mon Mar 30 2020 07:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47339 * 2 1 4 4 H 1.09004 * 109.46696 * 299.76532 * 3 2 1 5 5 C 1.53000 * 109.47097 * 59.76147 * 3 2 1 6 6 C 1.52994 * 109.47174 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.47363 * 300.00098 * 6 5 3 8 8 C 1.53000 * 109.47055 * 59.99829 * 7 6 5 9 9 C 1.52995 * 109.47531 * 300.00402 * 8 7 6 10 10 H 1.08993 * 109.47635 * 179.97438 * 9 8 7 11 11 N 1.46506 * 109.46962 * 299.99708 * 9 8 7 12 12 C 1.36935 * 119.99840 * 103.95171 * 11 9 8 13 13 H 1.07991 * 120.00244 * 42.56496 * 12 11 9 14 14 C 1.38814 * 119.99962 * 222.56872 * 12 11 9 15 15 N 1.31616 * 119.99970 * 191.47139 * 14 12 11 16 16 Si 1.86807 * 119.99845 * 11.46356 * 14 12 11 17 17 H 1.48495 * 109.47306 * 264.64507 * 16 14 12 18 18 H 1.48499 * 109.47189 * 24.64938 * 16 14 12 19 19 H 1.48502 * 109.46820 * 144.64965 * 16 14 12 20 20 C 1.46496 * 119.99735 * 283.95548 * 11 9 8 21 21 C 1.53001 * 109.46734 * 267.36946 * 20 11 9 22 22 O 1.42900 * 109.46790 * 65.25072 * 21 20 11 23 23 C 1.42898 * 113.99786 * 179.97438 * 22 21 20 24 24 H 1.08997 * 109.46903 * 299.99610 * 1 2 3 25 25 H 1.08999 * 109.47382 * 59.99553 * 1 2 3 26 26 H 1.08996 * 109.46965 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47216 * 239.99987 * 2 1 3 28 28 H 1.08998 * 109.47794 * 120.00103 * 2 1 3 29 29 H 1.08995 * 109.47546 * 300.00717 * 5 3 2 30 30 H 1.09005 * 109.46959 * 60.00041 * 5 3 2 31 31 H 1.08998 * 109.47442 * 60.00457 * 6 5 3 32 32 H 1.09003 * 109.47157 * 180.02562 * 6 5 3 33 33 H 1.09005 * 109.47383 * 180.02562 * 7 6 5 34 34 H 1.08997 * 109.47546 * 300.00204 * 7 6 5 35 35 H 1.09003 * 109.47354 * 179.97438 * 8 7 6 36 36 H 1.09005 * 109.46959 * 60.00398 * 8 7 6 37 37 H 0.97010 * 119.99669 * 179.97438 * 15 14 12 38 38 H 1.08997 * 109.47481 * 27.37297 * 20 11 9 39 39 H 1.09000 * 109.47121 * 147.37873 * 20 11 9 40 40 H 1.09001 * 109.46858 * 185.24512 * 21 20 11 41 41 H 1.08990 * 109.47434 * 305.25004 * 21 20 11 42 42 H 1.08997 * 109.47227 * 60.00265 * 23 22 21 43 43 H 1.09001 * 109.47150 * 179.97438 * 23 22 21 44 44 H 1.08998 * 109.47439 * 299.99840 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6801 1.9551 -0.8921 5 6 1.5252 2.1655 1.2462 6 6 2.0347 3.6081 1.2459 7 6 3.5646 3.6087 1.2516 8 6 4.0795 2.8857 0.0054 9 6 3.5700 1.4431 0.0056 10 1 3.9364 0.9281 -0.8824 11 7 4.0542 0.7544 1.2046 12 6 3.2041 0.5268 2.2537 13 1 2.1954 0.1888 2.0679 14 6 3.6389 0.7307 3.5562 15 7 2.9125 0.3031 4.5670 16 14 5.2551 1.6120 3.8741 17 1 6.3375 0.6114 4.0538 18 1 5.5771 2.4875 2.7188 19 1 5.1353 2.4375 5.1027 20 6 5.4478 0.3093 1.2811 21 6 5.5489 -1.1367 0.7913 22 8 5.2147 -1.1938 -0.5969 23 6 5.2787 -2.5070 -1.1566 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 0.4352 2.1655 1.2421 30 1 1.8850 1.6528 2.1384 31 1 1.6745 4.1205 0.3539 32 1 1.6682 4.1231 2.1340 33 1 3.9276 4.6365 1.2518 34 1 3.9249 3.0963 2.1436 35 1 5.1695 2.8865 0.0091 36 1 3.7193 3.3981 -0.8868 37 1 3.2166 0.4453 5.4772 38 1 6.0687 0.9494 0.6544 39 1 5.7918 0.3679 2.3137 40 1 6.5669 -1.4987 0.9351 41 1 4.8578 -1.7612 1.3573 42 1 4.5823 -3.1603 -0.6310 43 1 5.0109 -2.4655 -2.2124 44 1 6.2912 -2.8971 -1.0532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317185542.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:15 Heat of formation + Delta-G solvation = -27.097264 kcal Electronic energy + Delta-G solvation = -21851.597905 eV Core-core repulsion = 18997.778434 eV Total energy + Delta-G solvation = -2853.819470 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.80302 -38.57114 -35.79936 -34.72563 -33.66949 -31.17957 -30.28057 -29.04502 -27.04496 -25.67866 -24.48359 -23.49341 -22.15544 -21.39865 -19.98075 -18.72938 -17.57325 -16.89105 -16.57363 -16.09085 -15.85628 -15.75915 -15.21443 -14.62534 -14.47959 -14.28761 -14.10574 -13.99014 -13.46782 -13.38676 -13.06572 -12.88223 -12.66532 -12.46258 -12.42000 -12.18895 -12.01354 -11.96618 -11.87015 -11.65716 -11.34097 -11.02899 -10.72428 -10.53922 -10.48376 -10.36595 -10.01409 -8.34481 -7.91835 -5.37091 1.32173 1.47161 1.54655 2.53161 3.05482 3.27176 3.41171 4.06970 4.15442 4.29169 4.40128 4.44378 4.49146 4.53244 4.56157 4.62505 4.63394 4.66198 4.80006 4.80280 4.88500 4.90695 4.94882 5.01339 5.06020 5.07826 5.12493 5.17539 5.25024 5.31231 5.31568 5.53698 5.62633 5.68149 5.74036 5.80822 5.87379 6.14766 6.33190 6.42351 6.51857 7.21455 7.81402 8.29979 9.18695 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014218 B = 0.013001 C = 0.009670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.927998 B = 2153.245596 C = 2894.951229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.121 4.121 3 C -0.062 4.062 4 H 0.065 0.935 5 C -0.162 4.162 6 C -0.100 4.100 7 C -0.121 4.121 8 C -0.126 4.126 9 C 0.182 3.818 10 H 0.053 0.947 11 N -0.600 5.600 12 C -0.212 4.212 13 H 0.098 0.902 14 C -0.024 4.024 15 N -0.957 5.957 16 Si 0.917 3.083 17 H -0.294 1.294 18 H -0.240 1.240 19 H -0.328 1.328 20 C 0.137 3.863 21 C 0.055 3.945 22 O -0.395 6.395 23 C 0.029 3.971 24 H 0.044 0.956 25 H 0.058 0.942 26 H 0.049 0.951 27 H 0.048 0.952 28 H 0.067 0.933 29 H 0.039 0.961 30 H 0.118 0.882 31 H 0.058 0.942 32 H 0.039 0.961 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.044 0.956 36 H 0.068 0.932 37 H 0.254 0.746 38 H 0.063 0.937 39 H 0.040 0.960 40 H 0.051 0.949 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.096 0.904 44 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 0.398 -11.610 11.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.158 4.158 3 C -0.080 4.080 4 H 0.083 0.917 5 C -0.198 4.198 6 C -0.138 4.138 7 C -0.159 4.159 8 C -0.165 4.165 9 C 0.077 3.923 10 H 0.071 0.929 11 N -0.323 5.323 12 C -0.342 4.342 13 H 0.115 0.885 14 C -0.218 4.218 15 N -0.604 5.604 16 Si 0.751 3.249 17 H -0.223 1.223 18 H -0.164 1.164 19 H -0.259 1.259 20 C 0.011 3.989 21 C -0.024 4.024 22 O -0.314 6.314 23 C -0.068 4.068 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.057 0.943 30 H 0.135 0.865 31 H 0.077 0.923 32 H 0.058 0.942 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.063 0.937 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.069 0.931 41 H 0.050 0.950 42 H 0.051 0.949 43 H 0.115 0.885 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 2.110 0.573 -11.600 11.805 hybrid contribution 0.923 0.042 1.154 1.479 sum 3.033 0.615 -10.446 10.895 Atomic orbital electron populations 1.21742 0.96099 1.00898 1.01253 1.21728 0.95321 0.97005 1.01772 1.20956 0.94357 0.95423 0.97284 0.91678 1.22666 0.97993 0.96046 1.03111 1.21316 0.95328 0.97238 0.99879 1.21559 0.96284 0.98468 0.99550 1.21995 0.99261 0.97917 0.97367 1.20556 0.93167 0.90143 0.88443 0.92935 1.44082 1.06733 1.65419 1.16047 1.19131 0.97012 1.34137 0.83903 0.88514 1.25997 0.99384 1.00119 0.96286 1.69863 1.40725 1.51183 0.98634 0.86366 0.82593 0.79619 0.76312 1.22277 1.16365 1.25884 1.21188 0.87505 0.92873 0.97335 1.23073 0.97675 0.99621 0.82033 1.87862 1.90584 1.29106 1.23830 1.22821 1.00204 0.84304 0.99428 0.93704 0.92272 0.93205 0.93320 0.91475 0.94277 0.86458 0.92301 0.94202 0.93373 0.92816 0.93703 0.91330 0.93662 0.91914 0.94221 0.93138 0.94977 0.94900 0.88528 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.50 9.55 71.98 0.69 -3.81 16 2 C -0.12 -4.39 5.05 30.59 0.15 -4.23 16 3 C -0.06 -2.21 1.99 -10.79 -0.02 -2.23 16 4 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 5 C -0.16 -6.38 4.34 30.59 0.13 -6.25 16 6 C -0.10 -3.62 5.92 30.59 0.18 -3.44 16 7 C -0.12 -4.56 5.66 30.59 0.17 -4.39 16 8 C -0.13 -4.37 5.51 30.59 0.17 -4.20 16 9 C 0.18 6.81 2.49 44.99 0.11 6.92 16 10 H 0.05 1.96 7.21 -2.39 -0.02 1.94 16 11 N -0.60 -25.53 1.40 -697.99 -0.98 -26.51 16 12 C -0.21 -10.53 4.86 84.03 0.41 -10.12 16 13 H 0.10 5.15 3.62 -2.92 -0.01 5.14 16 14 C -0.02 -1.28 5.27 84.86 0.45 -0.83 16 15 N -0.96 -57.03 13.97 21.65 0.30 -56.73 16 16 Si 0.92 44.75 22.63 68.60 1.55 46.31 16 17 H -0.29 -14.12 6.87 99.48 0.68 -13.43 16 18 H -0.24 -10.85 5.83 99.48 0.58 -10.27 16 19 H -0.33 -17.04 7.11 99.48 0.71 -16.33 16 20 C 0.14 5.52 4.70 86.38 0.41 5.93 16 21 C 0.05 2.00 6.27 71.98 0.45 2.45 16 22 O -0.39 -13.43 9.64 -148.98 -1.44 -14.86 16 23 C 0.03 0.74 11.01 113.37 1.25 1.99 16 24 H 0.04 1.51 6.42 -2.39 -0.02 1.50 16 25 H 0.06 1.61 8.14 -2.39 -0.02 1.60 16 26 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 2.95 4.72 -2.39 -0.01 2.94 16 29 H 0.04 1.47 6.42 -2.39 -0.02 1.45 16 30 H 0.12 5.69 3.47 -12.73 -0.04 5.65 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.05 2.37 3.23 -2.39 -0.01 2.36 16 35 H 0.04 1.55 7.53 -2.39 -0.02 1.53 16 36 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 37 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 38 H 0.06 2.34 7.41 -2.39 -0.02 2.32 16 39 H 0.04 1.76 2.99 -2.39 -0.01 1.75 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -57.72 307.26 4.77 -52.95 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: 0.78 Total: 21.07 kcal Atomic # 6 Polarization: -26.76 SS G_CDS: 4.55 Total: -22.21 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -0.68 Total: -83.25 kcal Atomic # 8 Polarization: -13.43 SS G_CDS: -1.44 Total: -14.86 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.55 Total: 46.31 kcal Total: -57.72 4.77 -52.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317185542.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.854 kcal (2) G-P(sol) polarization free energy of solvation -57.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds