Wall clock time and date at job start Mon Mar 30 2020 07:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47221 * 2 1 4 4 H 1.08999 * 109.47610 * 304.99799 * 3 2 1 5 5 C 1.53003 * 109.47190 * 64.99838 * 3 2 1 6 6 C 1.52999 * 109.47114 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47109 * 300.00125 * 6 5 3 8 8 C 1.52995 * 109.47184 * 60.00186 * 7 6 5 9 9 C 1.53000 * 109.47245 * 299.99451 * 8 7 6 10 10 H 1.08996 * 109.47304 * 300.00757 * 9 8 7 11 11 N 1.46493 * 109.47362 * 179.97438 * 9 8 7 12 12 C 1.36941 * 120.00083 * 300.00207 * 11 9 8 13 13 H 1.07990 * 119.99921 * 27.15670 * 12 11 9 14 14 C 1.38817 * 119.99706 * 207.15263 * 12 11 9 15 15 N 1.31613 * 120.00161 * 41.58624 * 14 12 11 16 16 Si 1.86802 * 119.99446 * 221.58130 * 14 12 11 17 17 H 1.48494 * 109.47272 * 269.99886 * 16 14 12 18 18 H 1.48495 * 109.47586 * 30.00589 * 16 14 12 19 19 H 1.48507 * 109.46950 * 150.00396 * 16 14 12 20 20 C 1.46500 * 120.00026 * 120.00436 * 11 9 8 21 21 C 1.53004 * 109.47161 * 267.53834 * 20 11 9 22 22 O 1.42904 * 109.46870 * 64.99627 * 21 20 11 23 23 C 1.42903 * 113.99990 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.46761 * 59.99951 * 1 2 3 25 25 H 1.09003 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47395 * 300.00261 * 1 2 3 27 27 H 1.09003 * 109.46884 * 239.99612 * 2 1 3 28 28 H 1.08999 * 109.46761 * 120.00049 * 2 1 3 29 29 H 1.08999 * 109.46827 * 299.99904 * 5 3 2 30 30 H 1.09002 * 109.46828 * 60.00040 * 5 3 2 31 31 H 1.09002 * 109.46998 * 60.00442 * 6 5 3 32 32 H 1.09001 * 109.47443 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46936 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47284 * 299.99535 * 7 6 5 35 35 H 1.09003 * 109.47474 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.47588 * 60.00035 * 8 7 6 37 37 H 0.96992 * 119.99995 * 5.69697 * 15 14 12 38 38 H 1.08996 * 109.47183 * 27.53776 * 20 11 9 39 39 H 1.08999 * 109.47278 * 147.53776 * 20 11 9 40 40 H 1.08998 * 109.47329 * 184.99829 * 21 20 11 41 41 H 1.08996 * 109.46930 * 305.00114 * 21 20 11 42 42 H 1.09000 * 109.47239 * 300.00469 * 23 22 21 43 43 H 1.09004 * 109.46435 * 60.00323 * 23 22 21 44 44 H 1.09002 * 109.46745 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1458 3.5688 1.3076 7 6 3.6706 3.5700 1.1822 8 6 4.0754 2.8860 -0.1251 9 6 3.5649 1.4437 -0.1254 10 1 3.9991 0.9044 0.7165 11 7 3.9519 0.7889 -1.3774 12 6 3.5205 1.2927 -2.5754 13 1 3.2929 2.3443 -2.6684 14 6 3.3758 0.4517 -3.6703 15 7 2.8496 -0.7447 -3.5161 16 14 3.9279 1.0184 -5.3625 17 1 2.8003 1.6980 -6.0493 18 1 5.0641 1.9641 -5.2217 19 1 4.3584 -0.1568 -6.1620 20 6 4.8005 -0.4050 -1.3478 21 6 6.2682 0.0093 -1.4720 22 8 6.6468 0.7709 -0.3236 23 6 8.0069 1.2091 -0.3395 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1252 1.3968 30 1 2.0699 1.5874 2.1492 31 1 1.7115 4.1081 0.4658 32 1 1.8579 4.0561 2.2391 33 1 4.0344 4.5976 1.1828 34 1 4.1049 3.0308 2.0241 35 1 5.1617 2.8873 -0.2147 36 1 3.6412 3.4253 -0.9670 37 1 2.4874 -1.0080 -2.6557 38 1 4.6507 -0.9340 -0.4067 39 1 4.5362 -1.0593 -2.1785 40 1 6.8927 -0.8815 -1.5393 41 1 6.4003 0.6143 -2.3689 42 1 8.6673 0.3430 -0.3831 43 1 8.1755 1.8389 -1.2131 44 1 8.2154 1.7794 0.5658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317185545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:18 Heat of formation + Delta-G solvation = -53.755526 kcal Electronic energy + Delta-G solvation = -21273.720647 eV Core-core repulsion = 18418.745188 eV Total energy + Delta-G solvation = -2854.975459 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -38.64956 -37.12196 -34.84230 -33.18646 -31.28766 -29.78514 -28.47637 -27.01833 -25.63793 -23.78389 -23.15566 -21.66374 -20.06522 -19.91290 -19.08887 -16.90364 -15.72453 -15.37807 -14.87500 -14.41117 -14.15966 -13.93918 -13.61593 -13.48843 -13.24005 -12.93835 -12.54270 -12.35769 -12.12749 -11.73054 -11.24763 -11.19772 -10.92243 -10.82814 -10.65440 -10.63318 -10.50859 -10.36422 -10.18107 -10.11424 -9.98527 -9.78142 -9.38921 -9.29102 -9.14825 -8.94962 -8.09051 -6.74973 -6.06195 -3.05944 3.52746 3.58484 3.73459 4.52602 4.65631 5.10764 5.28032 5.37392 5.43433 5.61038 5.66748 5.72702 5.75706 5.84450 5.94952 5.95445 6.01189 6.12745 6.18207 6.19805 6.21238 6.28488 6.29386 6.37390 6.40139 6.50870 6.60922 6.67340 6.70174 6.73216 6.79208 6.86628 6.99165 7.11643 7.12977 7.25410 7.39676 7.42096 7.87955 8.22776 8.66183 9.21860 9.95065 10.43812 11.16248 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.010517 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.428938 B = 2661.771808 C = 3660.362398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.115 4.115 8 C -0.120 4.120 9 C 0.193 3.807 10 H 0.046 0.954 11 N -0.577 5.577 12 C -0.349 4.349 13 H 0.053 0.947 14 C -0.015 4.015 15 N -0.888 5.888 16 Si 1.033 2.967 17 H -0.297 1.297 18 H -0.294 1.294 19 H -0.288 1.288 20 C 0.144 3.856 21 C 0.046 3.954 22 O -0.380 6.380 23 C 0.034 3.966 24 H 0.050 0.950 25 H 0.042 0.958 26 H 0.043 0.957 27 H 0.081 0.919 28 H 0.039 0.961 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.056 0.944 37 H 0.270 0.730 38 H 0.034 0.966 39 H 0.087 0.913 40 H 0.026 0.974 41 H 0.049 0.951 42 H 0.028 0.972 43 H 0.033 0.967 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.536 3.522 8.230 9.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.110 4.110 4 H 0.089 0.911 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.159 4.159 9 C 0.086 3.914 10 H 0.064 0.936 11 N -0.297 5.297 12 C -0.477 4.477 13 H 0.071 0.929 14 C -0.219 4.219 15 N -0.527 5.527 16 Si 0.863 3.137 17 H -0.224 1.224 18 H -0.221 1.221 19 H -0.214 1.214 20 C 0.016 3.984 21 C -0.033 4.033 22 O -0.299 6.299 23 C -0.063 4.063 24 H 0.069 0.931 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.100 0.900 28 H 0.058 0.942 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.071 0.929 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.053 0.947 39 H 0.105 0.895 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.571 3.074 6.779 7.874 hybrid contribution 0.148 0.600 1.222 1.369 sum 2.719 3.674 8.000 9.214 Atomic orbital electron populations 1.21769 0.97461 1.00270 1.00785 1.21451 0.94169 0.97376 1.01845 1.21517 0.98375 0.95213 0.95909 0.91130 1.21640 0.99500 0.95347 0.98577 1.21505 0.96331 0.97124 1.00355 1.21520 0.95335 0.99423 0.99017 1.21850 1.00720 0.97908 0.95424 1.20252 0.90945 0.91841 0.88411 0.93563 1.43866 1.53647 1.30587 1.01602 1.19616 1.46379 0.93523 0.88189 0.92893 1.25403 0.98382 0.96300 1.01793 1.70808 1.31422 1.24118 1.26346 0.84037 0.76834 0.75467 0.77326 1.22425 1.22134 1.21418 1.20987 0.86411 0.90595 1.00380 1.23380 0.99073 0.92934 0.87933 1.87929 1.25861 1.72612 1.43470 1.22591 0.84763 0.97929 1.01062 0.93073 0.93936 0.93775 0.90035 0.94190 0.92918 0.93039 0.92462 0.93375 0.93410 0.92904 0.92226 0.92538 0.91806 0.94728 0.89492 0.95606 0.93253 0.95301 0.94811 0.90836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 9.67 37.16 0.36 -2.12 16 2 C -0.11 -2.14 5.32 -26.73 -0.14 -2.29 16 3 C -0.09 -1.74 1.55 -90.62 -0.14 -1.88 16 4 H 0.07 1.57 7.66 -51.93 -0.40 1.17 16 5 C -0.11 -1.82 4.96 -26.73 -0.13 -1.96 16 6 C -0.12 -1.76 5.92 -26.73 -0.16 -1.92 16 7 C -0.11 -1.84 5.92 -26.74 -0.16 -2.00 16 8 C -0.12 -2.33 5.17 -26.73 -0.14 -2.47 16 9 C 0.19 3.98 1.81 -67.93 -0.12 3.86 16 10 H 0.05 0.98 7.76 -51.93 -0.40 0.58 16 11 N -0.58 -13.44 1.43 -165.67 -0.24 -13.68 16 12 C -0.35 -9.09 8.05 -15.06 -0.12 -9.22 16 13 H 0.05 1.46 6.95 -52.49 -0.36 1.09 16 14 C -0.01 -0.39 4.50 -17.43 -0.08 -0.47 16 15 N -0.89 -24.91 12.16 55.49 0.67 -24.23 16 16 Si 1.03 24.61 30.06 -169.99 -5.11 19.50 16 17 H -0.30 -7.01 7.11 56.52 0.40 -6.61 16 18 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 19 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 20 C 0.14 3.23 5.52 -4.04 -0.02 3.21 16 21 C 0.05 0.93 6.28 37.16 0.23 1.16 16 22 O -0.38 -7.38 9.84 -35.23 -0.35 -7.73 16 23 C 0.03 0.51 11.01 101.05 1.11 1.62 16 24 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.67 6.57 -51.93 -0.34 0.33 16 27 H 0.08 1.87 5.67 -51.93 -0.29 1.57 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.05 0.80 6.56 -51.93 -0.34 0.46 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.06 1.23 7.58 -51.93 -0.39 0.83 16 36 H 0.06 1.20 6.96 -51.93 -0.36 0.84 16 37 H 0.27 7.57 6.29 -40.82 -0.26 7.31 16 38 H 0.03 0.75 7.87 -51.93 -0.41 0.34 16 39 H 0.09 2.17 5.55 -51.93 -0.29 1.88 16 40 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -27.04 331.75 -7.67 -34.71 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -8.14 Total: 0.91 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: 0.49 Total: -14.48 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.44 Total: -37.91 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: -0.35 Total: -7.73 kcal Atomic # 14 Polarization: 24.61 SS G_CDS: -5.11 Total: 19.50 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.04 -7.67 -34.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317185545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.045 kcal (2) G-P(sol) polarization free energy of solvation -27.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds