Wall clock time and date at job start Mon Mar 30 2020 07:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52993 * 109.47221 * 2 1 4 4 H 1.08999 * 109.47610 * 304.99799 * 3 2 1 5 5 C 1.53003 * 109.47190 * 64.99838 * 3 2 1 6 6 C 1.52999 * 109.47114 * 179.97438 * 5 3 2 7 7 C 1.52998 * 109.47109 * 300.00125 * 6 5 3 8 8 C 1.52995 * 109.47184 * 60.00186 * 7 6 5 9 9 C 1.53000 * 109.47245 * 299.99451 * 8 7 6 10 10 H 1.08996 * 109.47304 * 300.00757 * 9 8 7 11 11 N 1.46493 * 109.47362 * 179.97438 * 9 8 7 12 12 C 1.36941 * 120.00083 * 300.00207 * 11 9 8 13 13 H 1.07990 * 119.99921 * 27.15670 * 12 11 9 14 14 C 1.38817 * 119.99706 * 207.15263 * 12 11 9 15 15 N 1.31613 * 120.00161 * 41.58624 * 14 12 11 16 16 Si 1.86802 * 119.99446 * 221.58130 * 14 12 11 17 17 H 1.48494 * 109.47272 * 269.99886 * 16 14 12 18 18 H 1.48495 * 109.47586 * 30.00589 * 16 14 12 19 19 H 1.48507 * 109.46950 * 150.00396 * 16 14 12 20 20 C 1.46500 * 120.00026 * 120.00436 * 11 9 8 21 21 C 1.53004 * 109.47161 * 267.53834 * 20 11 9 22 22 O 1.42904 * 109.46870 * 64.99627 * 21 20 11 23 23 C 1.42903 * 113.99990 * 179.97438 * 22 21 20 24 24 H 1.08999 * 109.46761 * 59.99951 * 1 2 3 25 25 H 1.09003 * 109.47341 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47395 * 300.00261 * 1 2 3 27 27 H 1.09003 * 109.46884 * 239.99612 * 2 1 3 28 28 H 1.08999 * 109.46761 * 120.00049 * 2 1 3 29 29 H 1.08999 * 109.46827 * 299.99904 * 5 3 2 30 30 H 1.09002 * 109.46828 * 60.00040 * 5 3 2 31 31 H 1.09002 * 109.46998 * 60.00442 * 6 5 3 32 32 H 1.09001 * 109.47443 * 180.02562 * 6 5 3 33 33 H 1.09003 * 109.46936 * 180.02562 * 7 6 5 34 34 H 1.08999 * 109.47284 * 299.99535 * 7 6 5 35 35 H 1.09003 * 109.47474 * 179.97438 * 8 7 6 36 36 H 1.08996 * 109.47588 * 60.00035 * 8 7 6 37 37 H 0.96992 * 119.99995 * 5.69697 * 15 14 12 38 38 H 1.08996 * 109.47183 * 27.53776 * 20 11 9 39 39 H 1.08999 * 109.47278 * 147.53776 * 20 11 9 40 40 H 1.08998 * 109.47329 * 184.99829 * 21 20 11 41 41 H 1.08996 * 109.46930 * 305.00114 * 21 20 11 42 42 H 1.09000 * 109.47239 * 300.00469 * 23 22 21 43 43 H 1.09004 * 109.46435 * 60.00323 * 23 22 21 44 44 H 1.09002 * 109.46745 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1458 3.5688 1.3076 7 6 3.6706 3.5700 1.1822 8 6 4.0754 2.8860 -0.1251 9 6 3.5649 1.4437 -0.1254 10 1 3.9991 0.9044 0.7165 11 7 3.9519 0.7889 -1.3774 12 6 3.5205 1.2927 -2.5754 13 1 3.2929 2.3443 -2.6684 14 6 3.3758 0.4517 -3.6703 15 7 2.8496 -0.7447 -3.5161 16 14 3.9279 1.0184 -5.3625 17 1 2.8003 1.6980 -6.0493 18 1 5.0641 1.9641 -5.2217 19 1 4.3584 -0.1568 -6.1620 20 6 4.8005 -0.4050 -1.3478 21 6 6.2682 0.0093 -1.4720 22 8 6.6468 0.7709 -0.3236 23 6 8.0069 1.2091 -0.3395 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5139 0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1252 1.3968 30 1 2.0699 1.5874 2.1492 31 1 1.7115 4.1081 0.4658 32 1 1.8579 4.0561 2.2391 33 1 4.0344 4.5976 1.1828 34 1 4.1049 3.0308 2.0241 35 1 5.1617 2.8873 -0.2147 36 1 3.6412 3.4253 -0.9670 37 1 2.4874 -1.0080 -2.6557 38 1 4.6507 -0.9340 -0.4067 39 1 4.5362 -1.0593 -2.1785 40 1 6.8927 -0.8815 -1.5393 41 1 6.4003 0.6143 -2.3689 42 1 8.6673 0.3430 -0.3831 43 1 8.1755 1.8389 -1.2131 44 1 8.2154 1.7794 0.5658 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317185545.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:28:17 Heat of formation + Delta-G solvation = -66.772021 kcal Electronic energy + Delta-G solvation = -21274.285084 eV Core-core repulsion = 18418.745188 eV Total energy + Delta-G solvation = -2855.539897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.23541 -38.62457 -36.58394 -34.66264 -33.20125 -31.36878 -29.93567 -28.66247 -27.07641 -25.63360 -24.61540 -23.22704 -21.84359 -21.38423 -20.67903 -18.79332 -17.30142 -16.96495 -16.39625 -15.99029 -15.69846 -15.53173 -15.39298 -15.03892 -14.77174 -14.50024 -13.99405 -13.82801 -13.70435 -13.28229 -12.84346 -12.71535 -12.56654 -12.40923 -12.35436 -12.20561 -12.10282 -11.94849 -11.86762 -11.72760 -11.56336 -11.50252 -11.08217 -10.84964 -10.69016 -10.45823 -10.10994 -8.71133 -8.13088 -5.12062 1.58166 1.62685 1.81737 2.70602 3.06172 3.16224 3.57688 3.91357 4.05822 4.18174 4.29873 4.38431 4.41766 4.45196 4.51555 4.55235 4.60245 4.62807 4.65976 4.69982 4.79589 4.80550 4.86673 4.95200 4.96158 4.99662 5.09539 5.15975 5.24863 5.27040 5.29062 5.36717 5.37083 5.48728 5.55562 5.63837 5.79126 5.81776 6.12347 6.40446 6.56565 7.24042 7.97943 8.44479 9.05383 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014106 B = 0.010517 C = 0.007648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.428938 B = 2661.771808 C = 3660.362398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.108 4.108 3 C -0.083 4.083 4 H 0.034 0.966 5 C -0.106 4.106 6 C -0.113 4.113 7 C -0.108 4.108 8 C -0.111 4.111 9 C 0.190 3.810 10 H 0.045 0.955 11 N -0.584 5.584 12 C -0.338 4.338 13 H 0.033 0.967 14 C -0.057 4.057 15 N -0.912 5.912 16 Si 1.075 2.925 17 H -0.292 1.292 18 H -0.287 1.287 19 H -0.290 1.290 20 C 0.145 3.855 21 C 0.058 3.942 22 O -0.398 6.398 23 C 0.028 3.972 24 H 0.033 0.967 25 H 0.051 0.949 26 H 0.070 0.930 27 H 0.040 0.960 28 H 0.051 0.949 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.047 0.953 32 H 0.080 0.920 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.029 0.971 37 H 0.261 0.739 38 H 0.039 0.961 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.027 0.973 42 H 0.048 0.952 43 H 0.032 0.968 44 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.946 4.443 10.216 11.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.146 4.146 3 C -0.103 4.103 4 H 0.053 0.947 5 C -0.144 4.144 6 C -0.150 4.150 7 C -0.146 4.146 8 C -0.150 4.150 9 C 0.084 3.916 10 H 0.063 0.937 11 N -0.305 5.305 12 C -0.467 4.467 13 H 0.051 0.949 14 C -0.257 4.257 15 N -0.553 5.553 16 Si 0.903 3.097 17 H -0.219 1.219 18 H -0.214 1.214 19 H -0.216 1.216 20 C 0.018 3.982 21 C -0.020 4.020 22 O -0.317 6.317 23 C -0.068 4.068 24 H 0.052 0.948 25 H 0.070 0.930 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.070 0.930 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.072 0.928 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.045 0.955 42 H 0.066 0.934 43 H 0.050 0.950 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.994 4.012 8.784 10.110 hybrid contribution 0.075 0.328 0.675 0.754 sum 3.069 4.340 9.458 10.850 Atomic orbital electron populations 1.21696 0.95547 1.01094 1.01180 1.21373 0.95889 0.97004 1.00310 1.21399 0.97022 0.95182 0.96728 0.94726 1.21591 1.00576 0.95753 0.96501 1.21499 0.95401 0.96503 1.01623 1.21472 0.96188 1.00062 0.96875 1.21719 0.99453 0.97093 0.96756 1.20384 0.91949 0.92199 0.87043 0.93684 1.43966 1.53942 1.30760 1.01791 1.19547 1.45266 0.92393 0.89523 0.94918 1.26274 0.98780 0.96398 1.04248 1.70876 1.33419 1.25020 1.25938 0.83422 0.76695 0.75062 0.74498 1.21905 1.21376 1.21634 1.20886 0.87857 0.90038 0.99428 1.23045 0.97905 0.93542 0.87547 1.87876 1.28556 1.72658 1.42573 1.22823 0.82807 0.98953 1.02209 0.94788 0.92973 0.91127 0.94164 0.93023 0.91430 0.91770 0.93460 0.90125 0.91681 0.91769 0.93659 0.95221 0.92827 0.94258 0.92185 0.93373 0.95472 0.93383 0.94974 0.88514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.59 9.67 71.98 0.70 -3.89 16 2 C -0.11 -4.19 5.32 30.59 0.16 -4.03 16 3 C -0.08 -3.21 1.55 -10.79 -0.02 -3.23 16 4 H 0.03 1.58 7.66 -2.39 -0.02 1.56 16 5 C -0.11 -3.17 4.96 30.59 0.15 -3.02 16 6 C -0.11 -3.10 5.92 30.59 0.18 -2.92 16 7 C -0.11 -3.19 5.92 30.59 0.18 -3.01 16 8 C -0.11 -4.30 5.17 30.59 0.16 -4.14 16 9 C 0.19 7.90 1.81 44.99 0.08 7.98 16 10 H 0.04 1.88 7.76 -2.39 -0.02 1.86 16 11 N -0.58 -28.00 1.43 -678.04 -0.97 -28.96 16 12 C -0.34 -18.26 8.05 84.03 0.68 -17.59 16 13 H 0.03 1.89 6.95 -2.92 -0.02 1.87 16 14 C -0.06 -3.14 4.50 84.86 0.38 -2.76 16 15 N -0.91 -53.02 12.16 21.65 0.26 -52.75 16 16 Si 1.08 51.03 30.06 68.60 2.06 53.09 16 17 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 20 C 0.14 6.67 5.52 86.38 0.48 7.15 16 21 C 0.06 2.38 6.28 71.98 0.45 2.83 16 22 O -0.40 -15.02 9.84 -148.98 -1.47 -16.48 16 23 C 0.03 0.80 11.01 113.37 1.25 2.05 16 24 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 25 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.07 1.96 6.57 -2.39 -0.02 1.95 16 27 H 0.04 1.90 5.67 -2.39 -0.01 1.89 16 28 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.07 1.83 6.56 -2.39 -0.02 1.82 16 30 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 31 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.04 1.85 7.58 -2.39 -0.02 1.83 16 36 H 0.03 1.28 6.96 -2.39 -0.02 1.26 16 37 H 0.26 15.33 6.29 -92.71 -0.58 14.75 16 38 H 0.04 1.73 7.87 -2.39 -0.02 1.71 16 39 H 0.06 3.12 5.55 -2.39 -0.01 3.10 16 40 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 41 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 42 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.03 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 Total: -1.00 -60.10 331.75 5.84 -54.26 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: 1.12 Total: 15.42 kcal Atomic # 6 Polarization: -29.41 SS G_CDS: 4.83 Total: -24.57 kcal Atomic # 7 Polarization: -81.01 SS G_CDS: -0.70 Total: -81.72 kcal Atomic # 8 Polarization: -15.02 SS G_CDS: -1.47 Total: -16.48 kcal Atomic # 14 Polarization: 51.03 SS G_CDS: 2.06 Total: 53.09 kcal Total: -60.10 5.84 -54.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317185545.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.508 kcal (2) G-P(sol) polarization free energy of solvation -60.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds