Wall clock time and date at job start Mon Mar 30 2020 07:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47368 * 2 1 4 4 H 1.08997 * 109.46944 * 56.34097 * 3 2 1 5 5 C 1.52996 * 109.46676 * 296.34407 * 3 2 1 6 6 C 1.53003 * 109.46676 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47376 * 59.99850 * 6 5 3 8 8 C 1.53004 * 109.47270 * 300.00194 * 7 6 5 9 9 H 1.08994 * 109.47342 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.46534 * 299.99810 * 8 7 6 11 11 C 1.36941 * 120.00154 * 117.83545 * 10 8 7 12 12 H 1.08002 * 119.99822 * 39.57924 * 11 10 8 13 13 C 1.38809 * 120.00140 * 219.30781 * 11 10 8 14 14 N 1.31620 * 119.99652 * 197.69573 * 13 11 10 15 15 Si 1.86802 * 119.99947 * 17.69893 * 13 11 10 16 16 H 1.48498 * 109.47107 * 4.95466 * 15 13 11 17 17 H 1.48500 * 109.47083 * 124.96073 * 15 13 11 18 18 H 1.48503 * 109.46728 * 244.95606 * 15 13 11 19 19 C 1.46506 * 120.00384 * 297.83410 * 10 8 7 20 20 C 1.53007 * 109.46931 * 270.00474 * 19 10 8 21 21 O 1.42893 * 109.47171 * 64.99400 * 20 19 10 22 22 C 1.42906 * 114.00199 * 180.02562 * 21 20 19 23 23 C 1.52995 * 109.47143 * 176.33947 * 3 2 1 24 24 H 1.08997 * 109.47375 * 300.00209 * 1 2 3 25 25 H 1.08998 * 109.46564 * 60.00155 * 1 2 3 26 26 H 1.09000 * 109.47008 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47375 * 239.99791 * 2 1 3 28 28 H 1.08998 * 109.46564 * 119.99845 * 2 1 3 29 29 H 1.08997 * 109.47181 * 299.99544 * 5 3 2 30 30 H 1.08995 * 109.47333 * 60.00422 * 5 3 2 31 31 H 1.09001 * 109.47060 * 180.02562 * 6 5 3 32 32 H 1.09006 * 109.47169 * 299.99701 * 6 5 3 33 33 H 1.09004 * 109.47501 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.47092 * 59.99804 * 7 6 5 35 35 H 0.96992 * 120.00173 * 0.02562 * 14 13 11 36 36 H 1.09000 * 109.46579 * 29.99613 * 19 10 8 37 37 H 1.08994 * 109.47502 * 150.00687 * 19 10 8 38 38 H 1.08997 * 109.46937 * 184.99851 * 20 19 10 39 39 H 1.09005 * 109.46947 * 305.00156 * 20 19 10 40 40 H 1.09002 * 109.46743 * 60.00086 * 22 21 20 41 41 H 1.09000 * 109.47358 * 180.02562 * 22 21 20 42 42 H 1.09008 * 109.46735 * 300.00366 * 22 21 20 43 43 H 1.09006 * 109.46956 * 60.00031 * 23 3 2 44 44 H 1.08998 * 109.47260 * 300.00370 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6242 1.9749 0.8554 5 6 1.6066 2.1366 -1.2927 6 6 2.1161 3.5793 -1.2924 7 6 3.6433 3.5808 -1.2001 8 6 4.0768 2.8866 0.0926 9 1 5.1648 2.8873 0.1582 10 7 3.5173 3.6019 1.2422 11 6 2.6421 2.9680 2.0833 12 1 2.8052 1.9352 2.3538 13 6 1.5485 3.6545 2.5927 14 7 0.9121 3.1891 3.6467 15 14 0.9799 5.2386 1.7824 16 1 1.7797 5.4815 0.5550 17 1 -0.4562 5.1229 1.4227 18 1 1.1643 6.3708 2.7255 19 6 3.8942 4.9954 1.4921 20 6 5.1300 5.0358 2.3933 21 8 6.2417 4.4614 1.7033 22 6 7.4531 4.4493 2.4612 23 6 3.5673 1.4434 0.0921 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0225 1.6042 -2.1480 30 1 0.5186 2.1360 -1.3582 31 1 1.8069 4.0740 -2.2131 32 1 1.6998 4.1115 -0.4370 33 1 4.0063 4.6087 -1.1994 34 1 4.0595 3.0486 -2.0555 35 1 1.2076 2.3667 4.0676 36 1 4.1188 5.4864 0.5452 37 1 3.0696 5.5124 1.9829 38 1 5.3576 6.0700 2.6517 39 1 4.9348 4.4684 3.3033 40 1 7.3057 3.8695 3.3725 41 1 8.2485 3.9983 1.8679 42 1 7.7291 5.4712 2.7214 43 1 3.9832 0.9110 -0.7633 44 1 3.8761 0.9488 1.0130 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317200613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:44 Heat of formation + Delta-G solvation = -36.582510 kcal Electronic energy + Delta-G solvation = -21530.648298 eV Core-core repulsion = 18676.417517 eV Total energy + Delta-G solvation = -2854.230781 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -38.91593 -37.20726 -34.73228 -32.91365 -31.41713 -30.16164 -28.21733 -27.69349 -25.72276 -23.53973 -23.08191 -21.64812 -21.07511 -19.37715 -18.37289 -17.17453 -15.99544 -15.43128 -14.95836 -14.69743 -14.26239 -14.13732 -14.04249 -13.39611 -13.02877 -12.77358 -12.34187 -12.15084 -12.09440 -11.81773 -11.40109 -11.35954 -11.03578 -10.90545 -10.87421 -10.72447 -10.54571 -10.37970 -10.26630 -9.99750 -9.58872 -9.20266 -9.14640 -9.13343 -8.95980 -8.74464 -8.26038 -6.81195 -6.12769 -3.33040 3.40282 3.51503 3.62256 4.40215 4.57393 5.06345 5.35793 5.53754 5.56001 5.58305 5.66286 5.71579 5.84428 5.89594 5.90798 5.98707 6.03046 6.09731 6.15958 6.25392 6.36447 6.38460 6.42443 6.45828 6.48337 6.50669 6.55735 6.57799 6.72573 6.77175 6.81025 6.82465 6.87986 7.18818 7.20588 7.31655 7.34406 7.75874 7.87417 8.24404 8.57281 9.12429 9.66387 10.31623 11.13701 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.010263 C = 0.008498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.024212 B = 2727.643272 C = 3294.152263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.113 4.113 3 C -0.119 4.119 4 H 0.145 0.855 5 C -0.102 4.102 6 C -0.123 4.123 7 C -0.129 4.129 8 C 0.178 3.822 9 H 0.041 0.959 10 N -0.593 5.593 11 C -0.323 4.323 12 H 0.066 0.934 13 C -0.010 4.010 14 N -0.919 5.919 15 Si 1.042 2.958 16 H -0.264 1.264 17 H -0.301 1.301 18 H -0.298 1.298 19 C 0.152 3.848 20 C 0.041 3.959 21 O -0.380 6.380 22 C 0.033 3.967 23 C -0.089 4.089 24 H 0.058 0.942 25 H 0.050 0.950 26 H 0.039 0.961 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.044 0.956 35 H 0.264 0.736 36 H 0.050 0.950 37 H 0.055 0.945 38 H 0.029 0.971 39 H 0.052 0.948 40 H 0.034 0.966 41 H 0.075 0.925 42 H 0.030 0.970 43 H 0.037 0.963 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.799 0.315 -6.679 8.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.136 4.136 4 H 0.162 0.838 5 C -0.139 4.139 6 C -0.160 4.160 7 C -0.169 4.169 8 C 0.072 3.928 9 H 0.058 0.942 10 N -0.316 5.316 11 C -0.452 4.452 12 H 0.083 0.917 13 C -0.212 4.212 14 N -0.558 5.558 15 Si 0.875 3.125 16 H -0.191 1.191 17 H -0.230 1.230 18 H -0.226 1.226 19 C 0.026 3.974 20 C -0.037 4.037 21 O -0.299 6.299 22 C -0.064 4.064 23 C -0.127 4.127 24 H 0.077 0.923 25 H 0.069 0.931 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.101 0.899 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.047 0.953 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.093 0.907 42 H 0.048 0.952 43 H 0.056 0.944 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.647 1.404 -6.786 8.343 hybrid contribution 1.272 -1.083 0.258 1.691 sum 5.919 0.320 -6.527 8.817 Atomic orbital electron populations 1.21782 0.96782 1.00038 1.02050 1.21510 0.95251 0.98321 0.99937 1.22020 0.95611 0.94558 1.01418 0.83817 1.21479 0.99127 0.95814 0.97485 1.21670 0.96251 0.97064 1.01014 1.21995 0.96107 1.00041 0.98751 1.20435 0.95343 0.91084 0.85964 0.94165 1.44032 1.51681 1.09047 1.26882 1.19938 1.03308 0.98874 1.23129 0.91651 1.26243 0.93463 1.04116 0.97358 1.70846 1.44075 1.22571 1.18274 0.84194 0.75551 0.76167 0.76556 1.19099 1.22963 1.22617 1.21136 0.91772 0.88126 0.96364 1.23469 0.87794 0.94799 0.97687 1.87925 1.17815 1.82748 1.41369 1.22619 0.88067 0.99348 0.96358 1.21392 0.96179 0.95897 0.99201 0.92299 0.93103 0.94206 0.94065 0.93056 0.94360 0.93279 0.94562 0.89904 0.93333 0.93774 0.92529 0.93175 0.92711 0.95322 0.92982 0.94721 0.90672 0.95154 0.94391 0.92819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 9.64 37.16 0.36 -2.16 16 2 C -0.11 -2.00 5.42 -26.73 -0.14 -2.15 16 3 C -0.12 -2.36 1.67 -90.62 -0.15 -2.51 16 4 H 0.14 3.43 4.14 -51.93 -0.22 3.22 16 5 C -0.10 -1.88 4.93 -26.73 -0.13 -2.01 16 6 C -0.12 -2.35 5.76 -26.73 -0.15 -2.51 16 7 C -0.13 -2.42 5.33 -26.73 -0.14 -2.56 16 8 C 0.18 3.63 3.14 -67.90 -0.21 3.42 16 9 H 0.04 0.85 7.08 -51.93 -0.37 0.48 16 10 N -0.59 -13.32 1.44 -165.63 -0.24 -13.55 16 11 C -0.32 -8.20 5.98 -15.06 -0.09 -8.29 16 12 H 0.07 1.82 6.38 -52.49 -0.33 1.49 16 13 C -0.01 -0.26 4.99 -17.43 -0.09 -0.34 16 14 N -0.92 -26.90 13.71 55.49 0.76 -26.14 16 15 Si 1.04 24.90 23.48 -169.99 -3.99 20.91 16 16 H -0.26 -5.76 4.59 56.52 0.26 -5.50 16 17 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 18 H -0.30 -7.10 7.11 56.52 0.40 -6.69 16 19 C 0.15 3.22 4.19 -4.03 -0.02 3.20 16 20 C 0.04 0.80 6.28 37.16 0.23 1.04 16 21 O -0.38 -7.14 9.46 -35.23 -0.33 -7.47 16 22 C 0.03 0.48 11.01 101.05 1.11 1.60 16 23 C -0.09 -1.76 4.21 -26.71 -0.11 -1.87 16 24 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 25 H 0.05 0.81 6.52 -51.93 -0.34 0.47 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.89 6.52 -51.93 -0.34 0.55 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.78 3.26 -51.93 -0.17 1.61 16 33 H 0.05 0.90 6.74 -51.93 -0.35 0.55 16 34 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.26 7.74 8.73 -40.82 -0.36 7.39 16 36 H 0.05 1.00 6.54 -51.93 -0.34 0.66 16 37 H 0.06 1.21 3.39 -51.93 -0.18 1.04 16 38 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.03 0.39 8.14 -51.92 -0.42 -0.04 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 1.14 7.19 -51.93 -0.37 0.76 16 LS Contribution 311.79 15.07 4.70 4.70 Total: -1.00 -27.32 311.79 -6.44 -33.76 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -7.79 Total: 2.94 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 0.46 Total: -15.15 kcal Atomic # 7 Polarization: -40.21 SS G_CDS: 0.52 Total: -39.69 kcal Atomic # 8 Polarization: -7.14 SS G_CDS: -0.33 Total: -7.47 kcal Atomic # 14 Polarization: 24.90 SS G_CDS: -3.99 Total: 20.91 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -27.32 -6.44 -33.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317200613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.822 kcal (2) G-P(sol) polarization free energy of solvation -27.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds