Wall clock time and date at job start Mon Mar 30 2020 07:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47368 * 2 1 4 4 H 1.08997 * 109.46944 * 56.34097 * 3 2 1 5 5 C 1.52996 * 109.46676 * 296.34407 * 3 2 1 6 6 C 1.53003 * 109.46676 * 179.97438 * 5 3 2 7 7 C 1.52995 * 109.47376 * 59.99850 * 6 5 3 8 8 C 1.53004 * 109.47270 * 300.00194 * 7 6 5 9 9 H 1.08994 * 109.47342 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.46534 * 299.99810 * 8 7 6 11 11 C 1.36941 * 120.00154 * 117.83545 * 10 8 7 12 12 H 1.08002 * 119.99822 * 39.57924 * 11 10 8 13 13 C 1.38809 * 120.00140 * 219.30781 * 11 10 8 14 14 N 1.31620 * 119.99652 * 197.69573 * 13 11 10 15 15 Si 1.86802 * 119.99947 * 17.69893 * 13 11 10 16 16 H 1.48498 * 109.47107 * 4.95466 * 15 13 11 17 17 H 1.48500 * 109.47083 * 124.96073 * 15 13 11 18 18 H 1.48503 * 109.46728 * 244.95606 * 15 13 11 19 19 C 1.46506 * 120.00384 * 297.83410 * 10 8 7 20 20 C 1.53007 * 109.46931 * 270.00474 * 19 10 8 21 21 O 1.42893 * 109.47171 * 64.99400 * 20 19 10 22 22 C 1.42906 * 114.00199 * 180.02562 * 21 20 19 23 23 C 1.52995 * 109.47143 * 176.33947 * 3 2 1 24 24 H 1.08997 * 109.47375 * 300.00209 * 1 2 3 25 25 H 1.08998 * 109.46564 * 60.00155 * 1 2 3 26 26 H 1.09000 * 109.47008 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47375 * 239.99791 * 2 1 3 28 28 H 1.08998 * 109.46564 * 119.99845 * 2 1 3 29 29 H 1.08997 * 109.47181 * 299.99544 * 5 3 2 30 30 H 1.08995 * 109.47333 * 60.00422 * 5 3 2 31 31 H 1.09001 * 109.47060 * 180.02562 * 6 5 3 32 32 H 1.09006 * 109.47169 * 299.99701 * 6 5 3 33 33 H 1.09004 * 109.47501 * 180.02562 * 7 6 5 34 34 H 1.09006 * 109.47092 * 59.99804 * 7 6 5 35 35 H 0.96992 * 120.00173 * 0.02562 * 14 13 11 36 36 H 1.09000 * 109.46579 * 29.99613 * 19 10 8 37 37 H 1.08994 * 109.47502 * 150.00687 * 19 10 8 38 38 H 1.08997 * 109.46937 * 184.99851 * 20 19 10 39 39 H 1.09005 * 109.46947 * 305.00156 * 20 19 10 40 40 H 1.09002 * 109.46743 * 60.00086 * 22 21 20 41 41 H 1.09000 * 109.47358 * 180.02562 * 22 21 20 42 42 H 1.09008 * 109.46735 * 300.00366 * 22 21 20 43 43 H 1.09006 * 109.46956 * 60.00031 * 23 3 2 44 44 H 1.08998 * 109.47260 * 300.00370 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6242 1.9749 0.8554 5 6 1.6066 2.1366 -1.2927 6 6 2.1161 3.5793 -1.2924 7 6 3.6433 3.5808 -1.2001 8 6 4.0768 2.8866 0.0926 9 1 5.1648 2.8873 0.1582 10 7 3.5173 3.6019 1.2422 11 6 2.6421 2.9680 2.0833 12 1 2.8052 1.9352 2.3538 13 6 1.5485 3.6545 2.5927 14 7 0.9121 3.1891 3.6467 15 14 0.9799 5.2386 1.7824 16 1 1.7797 5.4815 0.5550 17 1 -0.4562 5.1229 1.4227 18 1 1.1643 6.3708 2.7255 19 6 3.8942 4.9954 1.4921 20 6 5.1300 5.0358 2.3933 21 8 6.2417 4.4614 1.7033 22 6 7.4531 4.4493 2.4612 23 6 3.5673 1.4434 0.0921 24 1 -0.3634 0.5138 0.8899 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 2.0225 1.6042 -2.1480 30 1 0.5186 2.1360 -1.3582 31 1 1.8069 4.0740 -2.2131 32 1 1.6998 4.1115 -0.4370 33 1 4.0063 4.6087 -1.1994 34 1 4.0595 3.0486 -2.0555 35 1 1.2076 2.3667 4.0676 36 1 4.1188 5.4864 0.5452 37 1 3.0696 5.5124 1.9829 38 1 5.3576 6.0700 2.6517 39 1 4.9348 4.4684 3.3033 40 1 7.3057 3.8695 3.3725 41 1 8.2485 3.9983 1.8679 42 1 7.7291 5.4712 2.7214 43 1 3.9832 0.9110 -0.7633 44 1 3.8761 0.9488 1.0130 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317200613.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:44 Heat of formation + Delta-G solvation = -52.279668 kcal Electronic energy + Delta-G solvation = -21531.328978 eV Core-core repulsion = 18676.417517 eV Total energy + Delta-G solvation = -2854.911461 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.54503 -38.64532 -36.38966 -34.60528 -33.23571 -31.72936 -29.70423 -29.37263 -27.04786 -25.33196 -24.59338 -23.24340 -22.69783 -21.00918 -20.03738 -19.07677 -17.50689 -16.91433 -16.59318 -16.22509 -15.95180 -15.72846 -15.51770 -14.91550 -14.71505 -14.34460 -13.89525 -13.77218 -13.66605 -13.34311 -13.02517 -12.88324 -12.63869 -12.45857 -12.39850 -12.29186 -12.02277 -11.92685 -11.78505 -11.64143 -11.34933 -11.02255 -10.76868 -10.59159 -10.56630 -10.36864 -10.24070 -8.79520 -8.15722 -5.38755 1.46519 1.57727 1.72615 2.62063 3.01568 3.24506 3.46090 4.03240 4.08008 4.18862 4.34737 4.38715 4.40980 4.47121 4.53473 4.56464 4.60547 4.62480 4.74568 4.77103 4.83204 4.84831 4.88018 4.94303 5.00114 5.01574 5.05244 5.08159 5.18208 5.26646 5.28411 5.33330 5.40703 5.66731 5.66897 5.73108 5.81224 6.05173 6.24647 6.36787 6.51038 7.11554 7.76389 8.31379 9.02281 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017695 B = 0.010263 C = 0.008498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1582.024212 B = 2727.643272 C = 3294.152263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.110 4.110 3 C -0.118 4.118 4 H 0.100 0.900 5 C -0.098 4.098 6 C -0.127 4.127 7 C -0.122 4.122 8 C 0.174 3.826 9 H 0.037 0.963 10 N -0.601 5.601 11 C -0.278 4.278 12 H 0.030 0.970 13 C -0.058 4.058 14 N -0.963 5.963 15 Si 1.075 2.925 16 H -0.229 1.229 17 H -0.315 1.315 18 H -0.299 1.299 19 C 0.144 3.856 20 C 0.050 3.950 21 O -0.398 6.398 22 C 0.028 3.972 23 C -0.085 4.085 24 H 0.026 0.974 25 H 0.063 0.937 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.034 0.966 29 H 0.063 0.937 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.247 0.753 36 H 0.070 0.930 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.022 0.978 40 H 0.029 0.971 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.064 0.936 44 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.225 1.006 -9.678 12.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.147 4.147 3 C -0.136 4.136 4 H 0.118 0.882 5 C -0.135 4.135 6 C -0.164 4.164 7 C -0.161 4.161 8 C 0.068 3.932 9 H 0.055 0.945 10 N -0.325 5.325 11 C -0.409 4.409 12 H 0.047 0.953 13 C -0.253 4.253 14 N -0.606 5.606 15 Si 0.904 3.096 16 H -0.153 1.153 17 H -0.245 1.245 18 H -0.227 1.227 19 C 0.019 3.981 20 C -0.029 4.029 21 O -0.317 6.317 22 C -0.068 4.068 23 C -0.123 4.123 24 H 0.046 0.954 25 H 0.082 0.918 26 H 0.081 0.919 27 H 0.085 0.915 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.056 0.944 36 H 0.088 0.912 37 H 0.061 0.939 38 H 0.076 0.924 39 H 0.041 0.959 40 H 0.047 0.953 41 H 0.115 0.885 42 H 0.070 0.930 43 H 0.082 0.918 44 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 6.126 2.103 -9.814 11.759 hybrid contribution 0.979 -1.400 1.171 2.071 sum 7.105 0.704 -8.643 11.211 Atomic orbital electron populations 1.21732 0.96111 1.01250 1.01066 1.21468 0.95831 0.97090 1.00339 1.21799 0.95416 0.95566 1.00773 0.88226 1.21443 0.99404 0.95617 0.97041 1.21695 0.96439 0.97258 1.01057 1.21900 0.95828 1.00310 0.98026 1.20545 0.94962 0.91347 0.86309 0.94528 1.44122 1.51246 1.09657 1.27492 1.19565 1.02754 0.97086 1.21490 0.95286 1.27068 0.94054 1.06636 0.97585 1.70964 1.45964 1.22881 1.20745 0.83848 0.74814 0.73582 0.77314 1.15296 1.24510 1.22693 1.21236 0.92275 0.87029 0.97581 1.23208 0.87831 0.95992 0.95875 1.87869 1.18753 1.82970 1.42149 1.22838 0.86837 1.00891 0.96268 1.21362 0.96267 0.95773 0.98882 0.95438 0.91850 0.91937 0.91495 0.94670 0.91878 0.93130 0.92037 0.92614 0.92861 0.91226 0.94384 0.91172 0.93855 0.92439 0.95912 0.95272 0.88469 0.93038 0.91755 0.95649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.76 9.64 71.98 0.69 -4.06 16 2 C -0.11 -3.80 5.42 30.60 0.17 -3.64 16 3 C -0.12 -4.59 1.67 -10.80 -0.02 -4.61 16 4 H 0.10 4.88 4.14 -2.39 -0.01 4.87 16 5 C -0.10 -3.31 4.93 30.59 0.15 -3.16 16 6 C -0.13 -4.43 5.76 30.59 0.18 -4.25 16 7 C -0.12 -4.06 5.33 30.59 0.16 -3.90 16 8 C 0.17 6.77 3.14 45.01 0.14 6.91 16 9 H 0.04 1.47 7.08 -2.39 -0.02 1.46 16 10 N -0.60 -26.71 1.44 -677.92 -0.98 -27.68 16 11 C -0.28 -14.59 5.98 84.03 0.50 -14.09 16 12 H 0.03 1.74 6.38 -2.91 -0.02 1.72 16 13 C -0.06 -3.26 4.99 84.86 0.42 -2.84 16 14 N -0.96 -59.50 13.71 21.65 0.30 -59.21 16 15 Si 1.07 51.06 23.48 68.60 1.61 52.67 16 16 H -0.23 -9.42 4.59 99.48 0.46 -8.96 16 17 H -0.32 -15.58 7.11 99.48 0.71 -14.88 16 18 H -0.30 -14.05 7.11 99.48 0.71 -13.34 16 19 C 0.14 5.88 4.19 86.38 0.36 6.24 16 20 C 0.05 1.87 6.28 71.98 0.45 2.32 16 21 O -0.40 -14.15 9.46 -148.98 -1.41 -15.56 16 22 C 0.03 0.75 11.01 113.37 1.25 2.00 16 23 C -0.09 -3.27 4.21 30.61 0.13 -3.14 16 24 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.91 6.52 -2.39 -0.02 1.89 16 26 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 27 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 28 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 1.69 6.52 -2.39 -0.02 1.68 16 31 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.06 2.26 3.26 -2.38 -0.01 2.25 16 33 H 0.05 1.74 6.74 -2.38 -0.02 1.72 16 34 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.25 15.54 8.73 -92.71 -0.81 14.73 16 36 H 0.07 2.58 6.54 -2.39 -0.02 2.56 16 37 H 0.04 1.88 3.39 -2.39 -0.01 1.87 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.02 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.10 2.15 8.14 -2.39 -0.02 2.14 16 42 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 43 H 0.06 2.12 8.14 -2.38 -0.02 2.10 16 44 H 0.02 1.09 7.19 -2.39 -0.02 1.07 16 Total: -1.00 -61.59 311.79 4.78 -56.81 By element: Atomic # 1 Polarization: 18.53 SS G_CDS: 0.67 Total: 19.19 kcal Atomic # 6 Polarization: -30.81 SS G_CDS: 4.59 Total: -26.22 kcal Atomic # 7 Polarization: -86.21 SS G_CDS: -0.68 Total: -86.89 kcal Atomic # 8 Polarization: -14.15 SS G_CDS: -1.41 Total: -15.56 kcal Atomic # 14 Polarization: 51.06 SS G_CDS: 1.61 Total: 52.67 kcal Total: -61.59 4.78 -56.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317200613.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.527 kcal (2) G-P(sol) polarization free energy of solvation -61.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.778 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds