Wall clock time and date at job start Mon Mar 30 2020 07:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46563 * 2 1 4 4 H 1.09000 * 109.47348 * 55.00660 * 3 2 1 5 5 C 1.53000 * 109.47446 * 295.00333 * 3 2 1 6 6 C 1.53003 * 109.46974 * 180.02562 * 5 3 2 7 7 C 1.53009 * 109.47166 * 59.99748 * 6 5 3 8 8 C 1.52997 * 109.47051 * 299.99853 * 7 6 5 9 9 H 1.08996 * 109.47621 * 300.00094 * 8 7 6 10 10 N 1.46507 * 109.46860 * 179.97438 * 8 7 6 11 11 C 1.36934 * 119.99970 * 305.03010 * 10 8 7 12 12 H 1.08005 * 120.00312 * 321.77536 * 11 10 8 13 13 C 1.38816 * 120.00105 * 141.77683 * 11 10 8 14 14 N 1.31615 * 119.99426 * 339.30440 * 13 11 10 15 15 Si 1.86804 * 120.00049 * 159.30361 * 13 11 10 16 16 H 1.48493 * 109.46935 * 60.00294 * 15 13 11 17 17 H 1.48501 * 109.46799 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46885 * 299.99958 * 15 13 11 19 19 C 1.46494 * 120.00006 * 125.02906 * 10 8 7 20 20 C 1.52998 * 109.47059 * 90.00014 * 19 10 8 21 21 O 1.42900 * 109.47058 * 65.00169 * 20 19 10 22 22 C 1.42905 * 113.99904 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47132 * 60.00432 * 8 7 6 24 24 H 1.08999 * 109.47529 * 59.99573 * 1 2 3 25 25 H 1.09000 * 109.46660 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46704 * 299.99188 * 1 2 3 27 27 H 1.09002 * 109.46704 * 240.00812 * 2 1 3 28 28 H 1.08995 * 109.47075 * 120.00236 * 2 1 3 29 29 H 1.08998 * 109.47169 * 60.00380 * 5 3 2 30 30 H 1.09002 * 109.47054 * 299.99696 * 5 3 2 31 31 H 1.09000 * 109.46970 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47377 * 300.00056 * 6 5 3 33 33 H 1.09000 * 109.46721 * 59.99906 * 7 6 5 34 34 H 1.09000 * 109.46834 * 179.97438 * 7 6 5 35 35 H 0.97007 * 119.99520 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.47237 * 210.00145 * 19 10 8 37 37 H 1.09005 * 109.46823 * 330.00360 * 19 10 8 38 38 H 1.09001 * 109.47288 * 185.00008 * 20 19 10 39 39 H 1.09008 * 109.47616 * 305.00110 * 20 19 10 40 40 H 1.09003 * 109.47311 * 59.99976 * 22 21 20 41 41 H 1.09001 * 109.47201 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.47057 * 299.99719 * 22 21 20 43 43 H 1.09000 * 109.47627 * 59.99342 * 23 8 7 44 44 H 1.09000 * 109.47087 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 2.1455 3.5690 -1.3074 7 6 3.6705 3.5704 -1.1820 8 6 4.0752 2.8863 0.1253 9 1 3.6410 3.4255 0.9672 10 7 5.5354 2.8871 0.2451 11 6 6.3047 2.3556 -0.7553 12 1 5.9799 1.4636 -1.2704 13 6 7.5021 2.9632 -1.1074 14 7 7.7145 4.2255 -0.8011 15 14 8.8120 1.9893 -2.0159 16 1 8.2620 1.5052 -3.3075 17 1 9.9870 2.8602 -2.2730 18 1 9.2284 0.8284 -1.1888 19 6 6.1724 3.4566 1.4350 20 6 6.3420 2.3655 2.4942 21 8 7.2532 1.3743 2.0153 22 6 7.4825 0.3036 2.9336 23 6 3.5649 1.4439 0.1254 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.5488 2.1254 -1.3968 30 1 2.0697 1.5877 -2.1492 31 1 1.8575 4.0563 -2.2390 32 1 1.7113 4.1083 -0.4656 33 1 4.1047 3.0312 -2.0239 34 1 4.0341 4.5980 -1.1826 35 1 8.5514 4.6500 -1.0468 36 1 7.1498 3.8579 1.1671 37 1 5.5481 4.2562 1.8338 38 1 6.7337 2.8067 3.4107 39 1 5.3760 1.9031 2.6975 40 1 6.5401 -0.2014 3.1455 41 1 8.1843 -0.4063 2.4959 42 1 7.8977 0.7017 3.8595 43 1 3.9991 0.9047 -0.7164 44 1 3.8536 0.9565 1.0566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317200617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:47 Heat of formation + Delta-G solvation = -54.337322 kcal Electronic energy + Delta-G solvation = -20738.223142 eV Core-core repulsion = 17883.222454 eV Total energy + Delta-G solvation = -2855.000688 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.55224 -36.97973 -35.06362 -32.96520 -31.15781 -29.68956 -28.70924 -27.10091 -25.59607 -23.88698 -23.16599 -21.61108 -20.78737 -19.47361 -19.13727 -16.25638 -15.69654 -14.96562 -14.92073 -14.54950 -14.39073 -13.95383 -13.61200 -13.54754 -13.23500 -13.04417 -12.91060 -12.12472 -11.78193 -11.64388 -11.60134 -11.18725 -10.93743 -10.82902 -10.79017 -10.69219 -10.60643 -10.49759 -10.23520 -10.18204 -10.03759 -9.75701 -9.47330 -9.39933 -9.19638 -8.72905 -8.24793 -6.36537 -5.58938 -3.14754 3.50710 3.55380 3.61761 4.64453 4.75780 5.05294 5.12327 5.25084 5.44452 5.52166 5.59699 5.63986 5.72674 5.80105 5.84906 5.95673 6.01391 6.04547 6.10383 6.13560 6.15087 6.20062 6.24537 6.33922 6.34907 6.35269 6.44376 6.53633 6.58327 6.69980 6.73670 6.79099 6.84784 7.04186 7.07101 7.35981 7.44894 7.75192 8.01637 8.15481 8.73455 9.38012 10.02216 10.58630 11.42549 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.007547 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.630430 B = 3709.074432 C = 4323.923896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.085 4.085 4 H 0.060 0.940 5 C -0.110 4.110 6 C -0.118 4.118 7 C -0.116 4.116 8 C 0.177 3.823 9 H 0.041 0.959 10 N -0.573 5.573 11 C -0.229 4.229 12 H 0.054 0.946 13 C 0.017 3.983 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.286 1.286 17 H -0.294 1.294 18 H -0.283 1.283 19 C 0.144 3.856 20 C 0.047 3.953 21 O -0.353 6.353 22 C 0.030 3.970 23 C -0.118 4.118 24 H 0.055 0.945 25 H 0.046 0.954 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.056 0.944 35 H 0.251 0.749 36 H 0.102 0.898 37 H 0.037 0.963 38 H 0.022 0.978 39 H 0.026 0.974 40 H 0.027 0.973 41 H 0.073 0.927 42 H 0.025 0.975 43 H 0.061 0.939 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.055 -4.695 4.351 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.104 4.104 4 H 0.079 0.921 5 C -0.147 4.147 6 C -0.156 4.156 7 C -0.155 4.155 8 C 0.070 3.930 9 H 0.059 0.941 10 N -0.292 5.292 11 C -0.359 4.359 12 H 0.071 0.929 13 C -0.182 4.182 14 N -0.539 5.539 15 Si 0.723 3.277 16 H -0.213 1.213 17 H -0.221 1.221 18 H -0.209 1.209 19 C 0.017 3.983 20 C -0.032 4.032 21 O -0.271 6.271 22 C -0.067 4.067 23 C -0.157 4.157 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.061 0.939 36 H 0.119 0.881 37 H 0.056 0.944 38 H 0.040 0.960 39 H 0.044 0.956 40 H 0.046 0.954 41 H 0.092 0.908 42 H 0.044 0.956 43 H 0.080 0.920 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -9.807 -4.550 4.122 11.570 hybrid contribution 0.680 -0.664 -0.033 0.951 sum -9.127 -5.214 4.089 11.279 Atomic orbital electron populations 1.21822 0.96619 1.00805 1.01621 1.21571 0.95052 0.97373 1.01640 1.21190 0.97072 0.94649 0.97510 0.92144 1.21585 0.99111 0.96356 0.97655 1.21575 0.97856 0.95864 1.00306 1.21828 0.92161 1.01200 1.00329 1.20364 0.85501 0.92456 0.94663 0.94094 1.43723 0.98991 1.69593 1.16881 1.18669 1.01430 1.04172 1.11625 0.92873 1.25015 1.00237 0.94422 0.98520 1.69955 1.24671 1.09349 1.49907 0.86539 0.81839 0.79941 0.79388 1.21255 1.22051 1.20897 1.21015 1.01436 0.90715 0.85138 1.23474 0.90697 0.91563 0.97508 1.88230 1.64562 1.33619 1.40664 1.22622 0.99315 0.91352 0.93443 1.22030 0.92292 1.00087 1.01307 0.92638 0.93477 0.93117 0.92260 0.92496 0.93053 0.92341 0.93169 0.93079 0.91595 0.92546 0.93925 0.88064 0.94429 0.96036 0.95554 0.95403 0.90833 0.95638 0.92024 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.67 37.16 0.36 -1.31 16 2 C -0.12 -1.56 5.40 -26.73 -0.14 -1.70 16 3 C -0.09 -1.27 2.19 -90.61 -0.20 -1.47 16 4 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 5 C -0.11 -1.59 4.96 -26.73 -0.13 -1.72 16 6 C -0.12 -1.86 5.92 -26.72 -0.16 -2.02 16 7 C -0.12 -2.32 5.09 -26.73 -0.14 -2.46 16 8 C 0.18 3.65 2.64 -67.93 -0.18 3.47 16 9 H 0.04 0.82 7.77 -51.93 -0.40 0.41 16 10 N -0.57 -13.93 2.34 -165.66 -0.39 -14.32 16 11 C -0.23 -6.20 7.56 -15.06 -0.11 -6.31 16 12 H 0.05 1.48 7.07 -52.48 -0.37 1.11 16 13 C 0.02 0.48 4.97 -17.43 -0.09 0.39 16 14 N -0.90 -25.99 11.47 55.49 0.64 -25.35 16 15 Si 0.89 22.56 29.60 -169.99 -5.03 17.52 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 19 C 0.14 3.38 5.71 -4.05 -0.02 3.36 16 20 C 0.05 0.97 6.28 37.16 0.23 1.21 16 21 O -0.35 -7.98 10.18 -35.23 -0.36 -8.34 16 22 C 0.03 0.52 11.01 101.05 1.11 1.63 16 23 C -0.12 -2.17 4.52 -26.72 -0.12 -2.30 16 24 H 0.05 0.59 6.56 -51.93 -0.34 0.25 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.65 6.56 -51.93 -0.34 0.31 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.07 1.46 7.56 -51.93 -0.39 1.07 16 34 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.10 2.74 5.54 -51.93 -0.29 2.46 16 37 H 0.04 0.82 7.88 -51.93 -0.41 0.41 16 38 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 39 H 0.03 0.52 8.14 -51.92 -0.42 0.10 16 40 H 0.03 0.44 8.14 -51.93 -0.42 0.01 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.06 1.26 7.19 -51.93 -0.37 0.89 16 44 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -28.94 337.41 -8.04 -36.98 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -8.40 Total: -2.35 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 0.41 Total: -9.23 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.25 Total: -39.67 kcal Atomic # 8 Polarization: -7.98 SS G_CDS: -0.36 Total: -8.34 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.03 Total: 17.52 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.94 -8.04 -36.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317200617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.358 kcal (2) G-P(sol) polarization free energy of solvation -28.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds