Wall clock time and date at job start Mon Mar 30 2020 07:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53004 * 109.46563 * 2 1 4 4 H 1.09000 * 109.47348 * 55.00660 * 3 2 1 5 5 C 1.53000 * 109.47446 * 295.00333 * 3 2 1 6 6 C 1.53003 * 109.46974 * 180.02562 * 5 3 2 7 7 C 1.53009 * 109.47166 * 59.99748 * 6 5 3 8 8 C 1.52997 * 109.47051 * 299.99853 * 7 6 5 9 9 H 1.08996 * 109.47621 * 300.00094 * 8 7 6 10 10 N 1.46507 * 109.46860 * 179.97438 * 8 7 6 11 11 C 1.36934 * 119.99970 * 305.03010 * 10 8 7 12 12 H 1.08005 * 120.00312 * 321.77536 * 11 10 8 13 13 C 1.38816 * 120.00105 * 141.77683 * 11 10 8 14 14 N 1.31615 * 119.99426 * 339.30440 * 13 11 10 15 15 Si 1.86804 * 120.00049 * 159.30361 * 13 11 10 16 16 H 1.48493 * 109.46935 * 60.00294 * 15 13 11 17 17 H 1.48501 * 109.46799 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46885 * 299.99958 * 15 13 11 19 19 C 1.46494 * 120.00006 * 125.02906 * 10 8 7 20 20 C 1.52998 * 109.47059 * 90.00014 * 19 10 8 21 21 O 1.42900 * 109.47058 * 65.00169 * 20 19 10 22 22 C 1.42905 * 113.99904 * 180.02562 * 21 20 19 23 23 C 1.53003 * 109.47132 * 60.00432 * 8 7 6 24 24 H 1.08999 * 109.47529 * 59.99573 * 1 2 3 25 25 H 1.09000 * 109.46660 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.46704 * 299.99188 * 1 2 3 27 27 H 1.09002 * 109.46704 * 240.00812 * 2 1 3 28 28 H 1.08995 * 109.47075 * 120.00236 * 2 1 3 29 29 H 1.08998 * 109.47169 * 60.00380 * 5 3 2 30 30 H 1.09002 * 109.47054 * 299.99696 * 5 3 2 31 31 H 1.09000 * 109.46970 * 179.97438 * 6 5 3 32 32 H 1.09000 * 109.47377 * 300.00056 * 6 5 3 33 33 H 1.09000 * 109.46721 * 59.99906 * 7 6 5 34 34 H 1.09000 * 109.46834 * 179.97438 * 7 6 5 35 35 H 0.97007 * 119.99520 * 179.97438 * 14 13 11 36 36 H 1.08998 * 109.47237 * 210.00145 * 19 10 8 37 37 H 1.09005 * 109.46823 * 330.00360 * 19 10 8 38 38 H 1.09001 * 109.47288 * 185.00008 * 20 19 10 39 39 H 1.09008 * 109.47616 * 305.00110 * 20 19 10 40 40 H 1.09003 * 109.47311 * 59.99976 * 22 21 20 41 41 H 1.09001 * 109.47201 * 179.97438 * 22 21 20 42 42 H 1.09006 * 109.47057 * 299.99719 * 22 21 20 43 43 H 1.09000 * 109.47627 * 59.99342 * 23 8 7 44 44 H 1.09000 * 109.47087 * 179.97438 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9816 0.8419 5 6 1.6351 2.1267 -1.3073 6 6 2.1455 3.5690 -1.3074 7 6 3.6705 3.5704 -1.1820 8 6 4.0752 2.8863 0.1253 9 1 3.6410 3.4255 0.9672 10 7 5.5354 2.8871 0.2451 11 6 6.3047 2.3556 -0.7553 12 1 5.9799 1.4636 -1.2704 13 6 7.5021 2.9632 -1.1074 14 7 7.7145 4.2255 -0.8011 15 14 8.8120 1.9893 -2.0159 16 1 8.2620 1.5052 -3.3075 17 1 9.9870 2.8602 -2.2730 18 1 9.2284 0.8284 -1.1888 19 6 6.1724 3.4566 1.4350 20 6 6.3420 2.3655 2.4942 21 8 7.2532 1.3743 2.0153 22 6 7.4825 0.3036 2.9336 23 6 3.5649 1.4439 0.1254 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8901 27 1 1.8933 -0.5137 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 0.5488 2.1254 -1.3968 30 1 2.0697 1.5877 -2.1492 31 1 1.8575 4.0563 -2.2390 32 1 1.7113 4.1083 -0.4656 33 1 4.1047 3.0312 -2.0239 34 1 4.0341 4.5980 -1.1826 35 1 8.5514 4.6500 -1.0468 36 1 7.1498 3.8579 1.1671 37 1 5.5481 4.2562 1.8338 38 1 6.7337 2.8067 3.4107 39 1 5.3760 1.9031 2.6975 40 1 6.5401 -0.2014 3.1455 41 1 8.1843 -0.4063 2.4959 42 1 7.8977 0.7017 3.8595 43 1 3.9991 0.9047 -0.7164 44 1 3.8536 0.9565 1.0566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317200617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:46 Heat of formation + Delta-G solvation = -69.743513 kcal Electronic energy + Delta-G solvation = -20738.891205 eV Core-core repulsion = 17883.222454 eV Total energy + Delta-G solvation = -2855.668750 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.02739 -38.57962 -36.72751 -34.36559 -33.08029 -31.24619 -30.05555 -28.76649 -27.15397 -25.68883 -24.41362 -23.10483 -22.36789 -21.06431 -20.54507 -18.19388 -17.34557 -16.70326 -16.51953 -16.05559 -15.70231 -15.59376 -15.22220 -15.17923 -14.57344 -14.49006 -14.14171 -13.48785 -13.42163 -13.20553 -13.06872 -12.73492 -12.68964 -12.37247 -12.34652 -12.26921 -12.16673 -12.04991 -11.79057 -11.70936 -11.52764 -11.41980 -11.09742 -10.88166 -10.71945 -10.34777 -10.28923 -8.38334 -7.67991 -5.26989 1.44817 1.49235 1.55453 2.59655 3.21144 3.41337 3.62359 3.91212 4.01127 4.20710 4.33580 4.40586 4.44190 4.52189 4.55253 4.61162 4.63958 4.71714 4.74183 4.79706 4.81881 4.85110 4.88612 4.95545 4.97355 5.00755 5.10462 5.14908 5.25250 5.30627 5.38025 5.42367 5.49400 5.59235 5.63397 5.73672 5.76655 5.82185 5.89510 6.54082 6.69843 7.32905 8.03053 8.53448 9.28126 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.017995 B = 0.007547 C = 0.006474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.630430 B = 3709.074432 C = 4323.923896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.078 4.078 4 H 0.073 0.927 5 C -0.105 4.105 6 C -0.110 4.110 7 C -0.108 4.108 8 C 0.172 3.828 9 H 0.052 0.948 10 N -0.587 5.587 11 C -0.217 4.217 12 H 0.040 0.960 13 C -0.030 4.030 14 N -0.922 5.922 15 Si 0.939 3.061 16 H -0.280 1.280 17 H -0.296 1.296 18 H -0.287 1.287 19 C 0.140 3.860 20 C 0.057 3.943 21 O -0.397 6.397 22 C 0.027 3.973 23 C -0.104 4.104 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.035 0.965 34 H 0.028 0.972 35 H 0.245 0.755 36 H 0.065 0.935 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.037 0.963 40 H 0.042 0.958 41 H 0.080 0.920 42 H 0.047 0.953 43 H 0.034 0.966 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.236 -5.696 5.274 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.097 4.097 4 H 0.091 0.909 5 C -0.143 4.143 6 C -0.148 4.148 7 C -0.148 4.148 8 C 0.066 3.934 9 H 0.071 0.929 10 N -0.306 5.306 11 C -0.348 4.348 12 H 0.058 0.942 13 C -0.226 4.226 14 N -0.568 5.568 15 Si 0.770 3.230 16 H -0.207 1.207 17 H -0.222 1.222 18 H -0.214 1.214 19 C 0.013 3.987 20 C -0.022 4.022 21 O -0.316 6.316 22 C -0.070 4.070 23 C -0.144 4.144 24 H 0.079 0.921 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.100 0.900 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.054 0.946 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.083 0.917 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.055 0.945 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.065 0.935 43 H 0.053 0.947 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -12.010 -5.570 5.053 14.170 hybrid contribution 1.341 -0.376 -0.269 1.418 sum -10.669 -5.946 4.784 13.117 Atomic orbital electron populations 1.21781 0.94454 1.01882 1.02266 1.21527 0.96872 0.95721 1.01289 1.21144 0.93995 0.96363 0.98241 0.90904 1.21567 1.00846 0.94914 0.96930 1.21512 0.94166 0.97395 1.01691 1.21702 0.95505 0.98738 0.98809 1.20570 0.83515 0.94101 0.95252 0.92943 1.43920 1.00450 1.69509 1.16744 1.18673 1.01622 1.03256 1.11281 0.94238 1.25522 1.01893 0.95106 1.00106 1.70071 1.24643 1.10362 1.51682 0.85780 0.80015 0.78598 0.78652 1.20650 1.22217 1.21370 1.20957 0.99761 0.92140 0.85829 1.23246 0.91254 0.90700 0.96953 1.88148 1.65073 1.35165 1.43203 1.22805 1.00432 0.90261 0.93501 1.21844 0.95129 0.97749 0.99655 0.92069 0.92316 0.92329 0.93008 0.92614 0.89962 0.93446 0.91927 0.91465 0.94643 0.95337 0.94585 0.91701 0.93265 0.93664 0.94465 0.93972 0.90178 0.93451 0.94745 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 9.67 71.98 0.70 -1.98 16 2 C -0.12 -2.75 5.40 30.60 0.17 -2.59 16 3 C -0.08 -2.15 2.19 -10.79 -0.02 -2.17 16 4 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 5 C -0.11 -2.78 4.96 30.60 0.15 -2.63 16 6 C -0.11 -3.25 5.92 30.60 0.18 -3.07 16 7 C -0.11 -4.38 5.09 30.60 0.16 -4.22 16 8 C 0.17 7.06 2.64 44.99 0.12 7.17 16 9 H 0.05 2.03 7.77 -2.39 -0.02 2.01 16 10 N -0.59 -29.02 2.34 -678.03 -1.59 -30.61 16 11 C -0.22 -12.10 7.56 84.03 0.64 -11.46 16 12 H 0.04 2.28 7.07 -2.91 -0.02 2.26 16 13 C -0.03 -1.74 4.97 84.86 0.42 -1.32 16 14 N -0.92 -55.31 11.47 21.65 0.25 -55.07 16 15 Si 0.94 47.48 29.60 68.60 2.03 49.51 16 16 H -0.28 -13.74 7.11 99.48 0.71 -13.04 16 17 H -0.30 -14.90 7.11 99.48 0.71 -14.20 16 18 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 19 C 0.14 6.64 5.71 86.38 0.49 7.13 16 20 C 0.06 2.32 6.28 71.98 0.45 2.77 16 21 O -0.40 -17.76 10.18 -148.98 -1.52 -19.28 16 22 C 0.03 0.87 11.01 113.37 1.25 2.12 16 23 C -0.10 -3.80 4.52 30.60 0.14 -3.66 16 24 H 0.06 1.05 6.56 -2.39 -0.02 1.04 16 25 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 27 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.08 1.74 6.56 -2.39 -0.02 1.72 16 30 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 33 H 0.03 1.61 7.56 -2.39 -0.02 1.59 16 34 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.24 14.43 8.31 -92.70 -0.77 13.66 16 36 H 0.07 3.62 5.54 -2.39 -0.01 3.61 16 37 H 0.05 2.15 7.88 -2.38 -0.02 2.13 16 38 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.04 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 42 H 0.05 1.32 8.14 -2.38 -0.02 1.31 16 43 H 0.03 1.42 7.19 -2.39 -0.02 1.40 16 44 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -64.07 337.41 4.93 -59.14 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: 0.92 Total: 10.22 kcal Atomic # 6 Polarization: -18.74 SS G_CDS: 4.83 Total: -13.91 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -1.34 Total: -85.68 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.52 Total: -19.28 kcal Atomic # 14 Polarization: 47.48 SS G_CDS: 2.03 Total: 49.51 kcal Total: -64.07 4.93 -59.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317200617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.607 kcal (2) G-P(sol) polarization free energy of solvation -64.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds