Wall clock time and date at job start Mon Mar 30 2020 07:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47315 * 2 1 4 4 H 1.08998 * 109.46893 * 304.99979 * 3 2 1 5 5 C 1.53000 * 109.47075 * 64.99866 * 3 2 1 6 6 C 1.53002 * 109.47593 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46752 * 300.00472 * 6 5 3 8 8 C 1.52997 * 109.47802 * 59.99557 * 7 6 5 9 9 H 1.08998 * 109.47088 * 59.99691 * 8 7 6 10 10 N 1.46495 * 109.47299 * 180.02562 * 8 7 6 11 11 C 1.36933 * 120.00404 * 65.02632 * 10 8 7 12 12 H 1.07999 * 119.99885 * 321.77880 * 11 10 8 13 13 C 1.38812 * 120.00451 * 141.77706 * 11 10 8 14 14 N 1.31628 * 119.99665 * 339.30544 * 13 11 10 15 15 Si 1.86798 * 120.00155 * 159.30365 * 13 11 10 16 16 H 1.48500 * 109.47212 * 60.00451 * 15 13 11 17 17 H 1.48504 * 109.47213 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47462 * 300.00164 * 15 13 11 19 19 C 1.46503 * 119.99854 * 245.02699 * 10 8 7 20 20 C 1.53003 * 109.47370 * 90.00040 * 19 10 8 21 21 O 1.42894 * 109.47068 * 64.99571 * 20 19 10 22 22 C 1.42900 * 114.00159 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47457 * 184.99661 * 3 2 1 24 24 H 1.09001 * 109.47300 * 59.99970 * 1 2 3 25 25 H 1.09000 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47118 * 300.00263 * 1 2 3 27 27 H 1.08997 * 109.47607 * 239.99904 * 2 1 3 28 28 H 1.09001 * 109.47300 * 120.00030 * 2 1 3 29 29 H 1.08997 * 109.47080 * 300.00044 * 5 3 2 30 30 H 1.09007 * 109.47383 * 60.00090 * 5 3 2 31 31 H 1.09007 * 109.46759 * 59.99615 * 6 5 3 32 32 H 1.08999 * 109.47457 * 179.97438 * 6 5 3 33 33 H 1.09007 * 109.46789 * 299.99125 * 7 6 5 34 34 H 1.09000 * 109.46972 * 179.97438 * 7 6 5 35 35 H 0.96993 * 119.99879 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.46921 * 330.00012 * 19 10 8 37 37 H 1.08996 * 109.47237 * 210.00012 * 19 10 8 38 38 H 1.09006 * 109.46610 * 305.00092 * 20 19 10 39 39 H 1.08991 * 109.47510 * 184.99976 * 20 19 10 40 40 H 1.09003 * 109.46821 * 299.99914 * 22 21 20 41 41 H 1.09000 * 109.47059 * 180.02562 * 22 21 20 42 42 H 1.08994 * 109.46899 * 59.99883 * 22 21 20 43 43 H 1.08999 * 109.46987 * 60.00102 * 23 3 2 44 44 H 1.08998 * 109.47329 * 300.00051 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1447 3.5693 1.3072 7 6 3.6695 3.5716 1.1811 8 6 4.0743 2.8876 -0.1262 9 1 3.6393 3.4263 -0.9680 10 7 5.5343 2.8893 -0.2465 11 6 6.2957 2.1816 0.6449 12 1 6.0140 2.1462 1.6869 13 6 7.4295 1.5095 0.2092 14 7 7.5632 1.2008 -1.0633 15 14 8.7654 1.0434 1.4288 16 1 8.1960 0.1494 2.4689 17 1 9.8621 0.3395 0.7167 18 1 9.3004 2.2712 2.0703 19 6 6.1799 3.6483 -1.3205 20 6 6.4741 5.0692 -0.8353 21 8 7.4327 5.0221 0.2234 22 6 7.7788 6.3040 0.7515 23 6 3.5648 1.4444 -0.1256 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5490 2.1253 1.3969 30 1 2.0698 1.5875 2.1492 31 1 1.7097 4.1080 0.4653 32 1 1.8559 4.0567 2.2384 33 1 4.1044 3.0328 2.0230 34 1 4.0324 4.5994 1.1806 35 1 8.3556 0.7316 -1.3678 36 1 5.5174 3.6895 -2.1852 37 1 7.1130 3.1596 -1.6006 38 1 5.5538 5.5269 -0.4721 39 1 6.8725 5.6597 -1.6602 40 1 8.2042 6.9204 -0.0404 41 1 8.5109 6.1824 1.5498 42 1 6.8856 6.7869 1.1477 43 1 3.8532 0.9570 -1.0570 44 1 3.9994 0.9053 0.7162 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317200621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:50 Heat of formation + Delta-G solvation = -54.314634 kcal Electronic energy + Delta-G solvation = -20686.132865 eV Core-core repulsion = 17831.133161 eV Total energy + Delta-G solvation = -2854.999704 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -38.52738 -36.98452 -35.03933 -32.98080 -31.09541 -29.77517 -28.59056 -27.13943 -25.59735 -23.92019 -23.01473 -21.78965 -20.62707 -19.49047 -19.12221 -16.25916 -15.69673 -14.98436 -14.88751 -14.48404 -14.41136 -13.94916 -13.68144 -13.56628 -13.14327 -13.01034 -12.70190 -12.33392 -11.84001 -11.62514 -11.46930 -11.10309 -11.00305 -10.80938 -10.78043 -10.69948 -10.53557 -10.38358 -10.35834 -10.18250 -10.02203 -9.74735 -9.47253 -9.36887 -9.19480 -8.73025 -8.24697 -6.36437 -5.58851 -3.14681 3.50733 3.55405 3.61827 4.64806 4.75722 5.09875 5.18208 5.29180 5.47689 5.54004 5.62760 5.63211 5.73474 5.80292 5.84859 5.94135 6.06288 6.10342 6.12772 6.14025 6.17273 6.21557 6.24037 6.31143 6.36412 6.40672 6.51407 6.55229 6.57966 6.69378 6.76176 6.79007 6.85970 7.03200 7.06036 7.37093 7.45626 7.75158 8.01680 8.15431 8.73498 9.38025 10.02249 10.58666 11.42597 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.007462 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.469443 B = 3751.661522 C = 4555.736499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.119 4.119 3 C -0.087 4.087 4 H 0.059 0.941 5 C -0.110 4.110 6 C -0.116 4.116 7 C -0.125 4.125 8 C 0.177 3.823 9 H 0.041 0.959 10 N -0.573 5.573 11 C -0.229 4.229 12 H 0.054 0.946 13 C 0.017 3.983 14 N -0.895 5.895 15 Si 0.892 3.108 16 H -0.286 1.286 17 H -0.294 1.294 18 H -0.283 1.283 19 C 0.144 3.856 20 C 0.047 3.953 21 O -0.353 6.353 22 C 0.030 3.970 23 C -0.109 4.109 24 H 0.049 0.951 25 H 0.046 0.954 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.051 0.949 32 H 0.048 0.952 33 H 0.061 0.939 34 H 0.047 0.953 35 H 0.251 0.749 36 H 0.037 0.963 37 H 0.102 0.898 38 H 0.026 0.974 39 H 0.022 0.978 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.027 0.973 43 H 0.056 0.944 44 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.576 4.487 1.291 10.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.106 4.106 4 H 0.077 0.923 5 C -0.147 4.147 6 C -0.154 4.154 7 C -0.164 4.164 8 C 0.070 3.930 9 H 0.059 0.941 10 N -0.292 5.292 11 C -0.359 4.359 12 H 0.071 0.929 13 C -0.182 4.182 14 N -0.538 5.538 15 Si 0.723 3.277 16 H -0.213 1.213 17 H -0.221 1.221 18 H -0.209 1.209 19 C 0.017 3.983 20 C -0.032 4.032 21 O -0.271 6.271 22 C -0.067 4.067 23 C -0.148 4.148 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.119 0.881 38 H 0.044 0.956 39 H 0.040 0.960 40 H 0.044 0.956 41 H 0.092 0.908 42 H 0.046 0.954 43 H 0.075 0.925 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.349 4.201 1.254 10.326 hybrid contribution 0.724 0.216 0.574 0.949 sum -8.626 4.417 1.828 9.862 Atomic orbital electron populations 1.21823 0.96778 1.00770 1.01462 1.21559 0.94819 0.97370 1.01891 1.21227 0.97564 0.94685 0.97099 0.92269 1.21585 0.99108 0.96031 0.97996 1.21526 0.97372 0.96262 1.00216 1.21988 0.93042 1.00282 1.01130 1.20373 0.85476 0.93306 0.93837 0.94092 1.43723 0.98844 1.53572 1.33047 1.18662 1.05406 1.23012 0.88802 0.92890 1.25015 1.00515 0.97126 0.95531 1.69955 1.27977 1.41500 1.14406 0.86541 0.82247 0.77891 0.81036 1.21255 1.22067 1.20898 1.21016 1.00499 0.87650 0.89135 1.23472 0.89958 1.01625 0.88192 1.88227 1.61166 1.25253 1.52446 1.22620 0.98861 0.87461 0.97788 1.21878 0.91353 0.99119 1.02451 0.93162 0.93487 0.92795 0.92230 0.92242 0.93055 0.92340 0.92979 0.93306 0.92040 0.93399 0.93933 0.94425 0.88061 0.95559 0.96029 0.95642 0.90828 0.95394 0.92504 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.67 37.16 0.36 -1.40 16 2 C -0.12 -1.67 5.40 -26.73 -0.14 -1.82 16 3 C -0.09 -1.35 2.19 -90.62 -0.20 -1.55 16 4 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 5 C -0.11 -1.60 4.96 -26.73 -0.13 -1.73 16 6 C -0.12 -1.75 5.92 -26.73 -0.16 -1.91 16 7 C -0.12 -2.33 5.24 -26.73 -0.14 -2.47 16 8 C 0.18 3.65 2.64 -67.91 -0.18 3.47 16 9 H 0.04 0.82 7.77 -51.93 -0.40 0.41 16 10 N -0.57 -13.92 2.34 -165.64 -0.39 -14.31 16 11 C -0.23 -6.19 7.56 -15.06 -0.11 -6.30 16 12 H 0.05 1.47 7.07 -52.49 -0.37 1.10 16 13 C 0.02 0.48 4.97 -17.43 -0.09 0.39 16 14 N -0.89 -25.91 11.47 55.49 0.64 -25.28 16 15 Si 0.89 22.54 29.60 -169.99 -5.03 17.51 16 16 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 17 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 18 H -0.28 -7.23 7.11 56.52 0.40 -6.83 16 19 C 0.14 3.38 5.71 -4.04 -0.02 3.36 16 20 C 0.05 0.97 6.28 37.16 0.23 1.20 16 21 O -0.35 -8.00 10.18 -35.23 -0.36 -8.35 16 22 C 0.03 0.52 11.01 101.05 1.11 1.63 16 23 C -0.11 -2.16 4.37 -26.71 -0.12 -2.27 16 24 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 26 H 0.05 0.60 6.56 -51.93 -0.34 0.26 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.05 0.65 6.56 -51.93 -0.34 0.31 16 30 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.06 1.26 7.20 -51.93 -0.37 0.89 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 36 H 0.04 0.82 7.88 -51.93 -0.41 0.41 16 37 H 0.10 2.74 5.54 -51.93 -0.29 2.45 16 38 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.46 7.56 -51.93 -0.39 1.07 16 LS Contribution 337.41 15.07 5.08 5.08 Total: -1.00 -28.88 337.41 -8.04 -36.92 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -8.40 Total: -2.18 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 0.41 Total: -9.40 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.25 Total: -39.59 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.36 Total: -8.35 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.88 -8.04 -36.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317200621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.390 kcal (2) G-P(sol) polarization free energy of solvation -28.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds