Wall clock time and date at job start Mon Mar 30 2020 07:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47315 * 2 1 4 4 H 1.08998 * 109.46893 * 304.99979 * 3 2 1 5 5 C 1.53000 * 109.47075 * 64.99866 * 3 2 1 6 6 C 1.53002 * 109.47593 * 180.02562 * 5 3 2 7 7 C 1.52997 * 109.46752 * 300.00472 * 6 5 3 8 8 C 1.52997 * 109.47802 * 59.99557 * 7 6 5 9 9 H 1.08998 * 109.47088 * 59.99691 * 8 7 6 10 10 N 1.46495 * 109.47299 * 180.02562 * 8 7 6 11 11 C 1.36933 * 120.00404 * 65.02632 * 10 8 7 12 12 H 1.07999 * 119.99885 * 321.77880 * 11 10 8 13 13 C 1.38812 * 120.00451 * 141.77706 * 11 10 8 14 14 N 1.31628 * 119.99665 * 339.30544 * 13 11 10 15 15 Si 1.86798 * 120.00155 * 159.30365 * 13 11 10 16 16 H 1.48500 * 109.47212 * 60.00451 * 15 13 11 17 17 H 1.48504 * 109.47213 * 180.02562 * 15 13 11 18 18 H 1.48496 * 109.47462 * 300.00164 * 15 13 11 19 19 C 1.46503 * 119.99854 * 245.02699 * 10 8 7 20 20 C 1.53003 * 109.47370 * 90.00040 * 19 10 8 21 21 O 1.42894 * 109.47068 * 64.99571 * 20 19 10 22 22 C 1.42900 * 114.00159 * 180.02562 * 21 20 19 23 23 C 1.52997 * 109.47457 * 184.99661 * 3 2 1 24 24 H 1.09001 * 109.47300 * 59.99970 * 1 2 3 25 25 H 1.09000 * 109.47220 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47118 * 300.00263 * 1 2 3 27 27 H 1.08997 * 109.47607 * 239.99904 * 2 1 3 28 28 H 1.09001 * 109.47300 * 120.00030 * 2 1 3 29 29 H 1.08997 * 109.47080 * 300.00044 * 5 3 2 30 30 H 1.09007 * 109.47383 * 60.00090 * 5 3 2 31 31 H 1.09007 * 109.46759 * 59.99615 * 6 5 3 32 32 H 1.08999 * 109.47457 * 179.97438 * 6 5 3 33 33 H 1.09007 * 109.46789 * 299.99125 * 7 6 5 34 34 H 1.09000 * 109.46972 * 179.97438 * 7 6 5 35 35 H 0.96993 * 119.99879 * 179.97438 * 14 13 11 36 36 H 1.09002 * 109.46921 * 330.00012 * 19 10 8 37 37 H 1.08996 * 109.47237 * 210.00012 * 19 10 8 38 38 H 1.09006 * 109.46610 * 305.00092 * 20 19 10 39 39 H 1.08991 * 109.47510 * 184.99976 * 20 19 10 40 40 H 1.09003 * 109.46821 * 299.99914 * 22 21 20 41 41 H 1.09000 * 109.47059 * 180.02562 * 22 21 20 42 42 H 1.08994 * 109.46899 * 59.99883 * 22 21 20 43 43 H 1.08999 * 109.46987 * 60.00102 * 23 3 2 44 44 H 1.08998 * 109.47329 * 300.00051 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1447 3.5693 1.3072 7 6 3.6695 3.5716 1.1811 8 6 4.0743 2.8876 -0.1262 9 1 3.6393 3.4263 -0.9680 10 7 5.5343 2.8893 -0.2465 11 6 6.2957 2.1816 0.6449 12 1 6.0140 2.1462 1.6869 13 6 7.4295 1.5095 0.2092 14 7 7.5632 1.2008 -1.0633 15 14 8.7654 1.0434 1.4288 16 1 8.1960 0.1494 2.4689 17 1 9.8621 0.3395 0.7167 18 1 9.3004 2.2712 2.0703 19 6 6.1799 3.6483 -1.3205 20 6 6.4741 5.0692 -0.8353 21 8 7.4327 5.0221 0.2234 22 6 7.7788 6.3040 0.7515 23 6 3.5648 1.4444 -0.1256 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 0.5490 2.1253 1.3969 30 1 2.0698 1.5875 2.1492 31 1 1.7097 4.1080 0.4653 32 1 1.8559 4.0567 2.2384 33 1 4.1044 3.0328 2.0230 34 1 4.0324 4.5994 1.1806 35 1 8.3556 0.7316 -1.3678 36 1 5.5174 3.6895 -2.1852 37 1 7.1130 3.1596 -1.6006 38 1 5.5538 5.5269 -0.4721 39 1 6.8725 5.6597 -1.6602 40 1 8.2042 6.9204 -0.0404 41 1 8.5109 6.1824 1.5498 42 1 6.8856 6.7869 1.1477 43 1 3.8532 0.9570 -1.0570 44 1 3.9994 0.9053 0.7162 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317200621.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:49 Heat of formation + Delta-G solvation = -69.704617 kcal Electronic energy + Delta-G solvation = -20686.800225 eV Core-core repulsion = 17831.133161 eV Total energy + Delta-G solvation = -2855.667064 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.01805 -38.58612 -36.71924 -34.40235 -33.00702 -31.33737 -29.95385 -28.81164 -27.15234 -25.70734 -24.31752 -23.29868 -22.20319 -21.10681 -20.53786 -18.19254 -17.34629 -16.69686 -16.53258 -16.06909 -15.64341 -15.64099 -15.26316 -15.18348 -14.60749 -14.24803 -14.13556 -13.74870 -13.40880 -13.09287 -13.06786 -12.74033 -12.69640 -12.38204 -12.31237 -12.29339 -12.11073 -12.05642 -11.81476 -11.71071 -11.57714 -11.40182 -11.10402 -10.82364 -10.73494 -10.35197 -10.28453 -8.38064 -7.67795 -5.26770 1.44802 1.49181 1.55397 2.59760 3.21278 3.41832 3.61642 3.91840 4.02863 4.22216 4.32377 4.41507 4.43612 4.50296 4.54694 4.61609 4.63850 4.69534 4.75580 4.81477 4.84049 4.85711 4.89703 4.94276 4.96185 5.01525 5.10713 5.16056 5.25224 5.28864 5.37855 5.45113 5.50008 5.55799 5.63736 5.75288 5.77147 5.83025 5.89419 6.54216 6.69983 7.33019 8.03192 8.53595 9.28288 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018744 B = 0.007462 C = 0.006145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1493.469443 B = 3751.661522 C = 4555.736499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.079 4.079 4 H 0.071 0.929 5 C -0.106 4.106 6 C -0.108 4.108 7 C -0.114 4.114 8 C 0.171 3.829 9 H 0.052 0.948 10 N -0.587 5.587 11 C -0.217 4.217 12 H 0.040 0.960 13 C -0.031 4.031 14 N -0.921 5.921 15 Si 0.939 3.061 16 H -0.280 1.280 17 H -0.296 1.296 18 H -0.287 1.287 19 C 0.140 3.860 20 C 0.057 3.943 21 O -0.397 6.397 22 C 0.027 3.973 23 C -0.098 4.098 24 H 0.057 0.943 25 H 0.057 0.943 26 H 0.064 0.936 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.082 0.918 30 H 0.047 0.953 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.035 0.965 34 H 0.042 0.958 35 H 0.245 0.755 36 H 0.049 0.951 37 H 0.065 0.935 38 H 0.038 0.962 39 H 0.045 0.955 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.042 0.958 43 H 0.025 0.975 44 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.739 5.857 1.869 13.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.098 4.098 4 H 0.089 0.911 5 C -0.143 4.143 6 C -0.146 4.146 7 C -0.154 4.154 8 C 0.065 3.935 9 H 0.070 0.930 10 N -0.306 5.306 11 C -0.348 4.348 12 H 0.058 0.942 13 C -0.227 4.227 14 N -0.567 5.567 15 Si 0.770 3.230 16 H -0.207 1.207 17 H -0.223 1.223 18 H -0.213 1.213 19 C 0.013 3.987 20 C -0.022 4.022 21 O -0.316 6.316 22 C -0.070 4.070 23 C -0.137 4.137 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.083 0.917 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.101 0.899 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.061 0.939 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.083 0.917 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.065 0.935 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.044 0.956 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -11.533 5.588 1.845 12.947 hybrid contribution 1.388 -0.159 0.389 1.450 sum -10.145 5.429 2.234 11.721 Atomic orbital electron populations 1.21767 0.94146 1.01888 1.02351 1.21534 0.97056 0.96037 1.01013 1.21158 0.93955 0.96198 0.98463 0.91109 1.21568 1.00919 0.95253 0.96544 1.21489 0.94117 0.97046 1.01990 1.21828 0.95983 0.99000 0.98579 1.20585 0.83461 0.94037 0.95400 0.92962 1.43922 1.00361 1.53659 1.32689 1.18666 1.05489 1.21918 0.88712 0.94233 1.25525 1.02285 0.98168 0.96677 1.70073 1.28080 1.42979 1.15574 0.85782 0.80341 0.77361 0.79563 1.20657 1.22281 1.21328 1.20957 0.99066 0.89092 0.89571 1.23244 0.90465 0.99708 0.88737 1.88145 1.61700 1.28628 1.53153 1.22805 0.99836 0.85745 0.98616 1.21726 0.94790 0.97874 0.99343 0.92351 0.92401 0.91716 0.93342 0.93089 0.89908 0.93432 0.91330 0.91311 0.94663 0.93920 0.94620 0.93301 0.91716 0.94410 0.93667 0.93471 0.90177 0.93922 0.95573 0.94722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.92 9.67 71.98 0.70 -2.22 16 2 C -0.12 -3.20 5.40 30.59 0.17 -3.03 16 3 C -0.08 -2.34 2.19 -10.79 -0.02 -2.36 16 4 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 5 C -0.11 -2.77 4.96 30.60 0.15 -2.62 16 6 C -0.11 -2.94 5.92 30.59 0.18 -2.76 16 7 C -0.11 -4.16 5.24 30.59 0.16 -4.00 16 8 C 0.17 7.04 2.64 45.01 0.12 7.15 16 9 H 0.05 2.02 7.77 -2.39 -0.02 2.00 16 10 N -0.59 -29.03 2.34 -677.95 -1.59 -30.62 16 11 C -0.22 -12.06 7.56 84.03 0.64 -11.43 16 12 H 0.04 2.29 7.07 -2.91 -0.02 2.27 16 13 C -0.03 -1.76 4.97 84.86 0.42 -1.34 16 14 N -0.92 -55.29 11.47 21.65 0.25 -55.05 16 15 Si 0.94 47.51 29.60 68.60 2.03 49.54 16 16 H -0.28 -13.76 7.11 99.48 0.71 -13.05 16 17 H -0.30 -14.96 7.11 99.48 0.71 -14.26 16 18 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 19 C 0.14 6.64 5.71 86.38 0.49 7.13 16 20 C 0.06 2.31 6.28 71.98 0.45 2.77 16 21 O -0.40 -17.76 10.18 -148.98 -1.52 -19.28 16 22 C 0.03 0.87 11.01 113.37 1.25 2.12 16 23 C -0.10 -3.96 4.37 30.61 0.13 -3.82 16 24 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 25 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 26 H 0.06 1.18 6.56 -2.39 -0.02 1.16 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.08 1.73 6.56 -2.39 -0.02 1.71 16 30 H 0.05 1.36 8.14 -2.38 -0.02 1.34 16 31 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 32 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.03 1.45 7.20 -2.38 -0.02 1.43 16 34 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.24 14.43 8.31 -92.71 -0.77 13.66 16 36 H 0.05 2.14 7.88 -2.39 -0.02 2.12 16 37 H 0.06 3.62 5.54 -2.39 -0.01 3.60 16 38 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 42 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.03 1.58 7.56 -2.39 -0.02 1.56 16 Total: -1.00 -64.22 337.41 4.93 -59.29 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.92 Total: 10.53 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: 4.83 Total: -14.42 kcal Atomic # 7 Polarization: -84.32 SS G_CDS: -1.34 Total: -85.66 kcal Atomic # 8 Polarization: -17.76 SS G_CDS: -1.52 Total: -19.28 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 2.03 Total: 49.54 kcal Total: -64.22 4.93 -59.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317200621.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.413 kcal (2) G-P(sol) polarization free energy of solvation -64.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds