Wall clock time and date at job start Mon Mar 30 2020 07:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46770 * 2 1 4 4 H 1.08998 * 109.47368 * 304.99673 * 3 2 1 5 5 C 1.52997 * 109.47334 * 65.00352 * 3 2 1 6 6 C 1.52999 * 109.46971 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47019 * 299.99386 * 6 5 3 8 8 C 1.52997 * 109.46748 * 60.00477 * 7 6 5 9 9 H 1.09007 * 109.46878 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47314 * 60.00166 * 8 7 6 11 11 C 1.36935 * 119.99769 * 239.33442 * 10 8 7 12 12 H 1.08003 * 120.00368 * 327.34976 * 11 10 8 13 13 C 1.38813 * 120.00008 * 147.33579 * 11 10 8 14 14 N 1.31620 * 120.00055 * 163.59766 * 13 11 10 15 15 Si 1.86803 * 120.00056 * 343.61104 * 13 11 10 16 16 H 1.48491 * 109.47057 * 95.66835 * 15 13 11 17 17 H 1.48497 * 109.46695 * 215.67123 * 15 13 11 18 18 H 1.48500 * 109.46579 * 335.66831 * 15 13 11 19 19 C 1.46495 * 120.00300 * 59.33604 * 10 8 7 20 20 C 1.53003 * 109.46947 * 84.10828 * 19 10 8 21 21 O 1.42895 * 109.47017 * 62.67044 * 20 19 10 22 22 C 1.42902 * 113.99977 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47334 * 299.99455 * 8 7 6 24 24 H 1.09002 * 109.47028 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46869 * 299.99957 * 1 2 3 26 26 H 1.09002 * 109.47135 * 59.99753 * 1 2 3 27 27 H 1.09003 * 109.46869 * 240.00043 * 2 1 3 28 28 H 1.08996 * 109.46632 * 119.99767 * 2 1 3 29 29 H 1.09007 * 109.46878 * 299.99260 * 5 3 2 30 30 H 1.08998 * 109.47447 * 59.99369 * 5 3 2 31 31 H 1.09010 * 109.47153 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.47505 * 60.00016 * 6 5 3 33 33 H 1.08998 * 109.47076 * 300.00336 * 7 6 5 34 34 H 1.09002 * 109.47017 * 180.02562 * 7 6 5 35 35 H 0.96995 * 120.00106 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47302 * 204.10989 * 19 10 8 37 37 H 1.09001 * 109.47238 * 324.11215 * 19 10 8 38 38 H 1.09005 * 109.46645 * 182.66841 * 20 19 10 39 39 H 1.09000 * 109.47271 * 302.66982 * 20 19 10 40 40 H 1.09006 * 109.47117 * 179.97438 * 22 21 20 41 41 H 1.08992 * 109.47418 * 300.00523 * 22 21 20 42 42 H 1.09004 * 109.46693 * 60.00662 * 22 21 20 43 43 H 1.08998 * 109.47368 * 300.00679 * 23 8 7 44 44 H 1.08997 * 109.47287 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1457 3.5688 1.3075 7 6 3.6706 3.5701 1.1821 8 6 4.0753 2.8861 -0.1252 9 1 5.1617 2.8866 -0.2143 10 7 3.4917 3.6110 -1.2567 11 6 2.6428 2.9677 -2.1173 12 1 2.7810 1.9175 -2.3280 13 6 1.6044 3.6654 -2.7189 14 7 0.9948 3.1607 -3.7705 15 14 1.0726 5.3209 -2.0362 16 1 1.7483 6.4073 -2.7899 17 1 -0.3990 5.4635 -2.1744 18 1 1.4458 5.4075 -0.6014 19 6 3.8162 5.0239 -1.4674 20 6 5.1326 5.1352 -2.2392 21 8 4.9808 4.5377 -3.5284 22 6 6.1592 4.5889 -4.3351 23 6 3.5649 1.4438 -0.1255 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1253 1.3969 30 1 2.0698 1.5875 2.1492 31 1 1.8570 4.0564 2.2388 32 1 1.7115 4.1081 0.4658 33 1 4.1048 3.0308 2.0240 34 1 4.0344 4.5977 1.1827 35 1 0.2694 3.6483 -4.1911 36 1 3.0187 5.4986 -2.0389 37 1 3.9176 5.5212 -0.5027 38 1 5.3983 6.1860 -2.3547 39 1 5.9205 4.6194 -1.6902 40 1 5.9622 4.1148 -5.2967 41 1 6.4459 5.6283 -4.4941 42 1 6.9686 4.0619 -3.8298 43 1 3.9991 0.9045 0.7164 44 1 3.8536 0.9563 -1.0566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000317200624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:53 Heat of formation + Delta-G solvation = -25.460903 kcal Electronic energy + Delta-G solvation = -21515.892167 eV Core-core repulsion = 18662.143655 eV Total energy + Delta-G solvation = -2853.748512 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -38.97151 -37.06651 -34.74450 -32.84489 -31.29509 -30.22264 -28.24240 -27.83676 -25.65704 -23.72529 -23.08568 -21.80582 -21.20321 -19.46346 -18.33983 -16.57685 -16.00368 -15.53542 -14.79806 -14.77127 -14.22801 -14.05890 -14.02860 -13.42920 -12.88256 -12.65390 -12.38777 -12.21015 -12.01446 -11.71171 -11.62360 -11.51217 -11.15566 -10.97417 -10.71339 -10.65020 -10.56799 -10.52544 -10.28061 -9.88604 -9.69857 -9.37104 -9.24394 -9.04225 -8.99922 -8.87305 -8.21638 -6.70318 -5.77893 -3.13891 3.39360 3.49171 3.56040 4.55309 4.64321 4.98430 5.40202 5.51272 5.52629 5.65792 5.70537 5.75668 5.83406 5.88435 5.93471 5.96192 6.00014 6.10750 6.15505 6.16147 6.25284 6.32420 6.33584 6.36695 6.42238 6.45675 6.51518 6.53044 6.67732 6.68930 6.72066 6.79952 6.85307 7.11136 7.17179 7.19194 7.30462 7.85918 7.96227 8.19089 8.52650 9.11544 9.87449 10.24237 11.37178 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.009776 C = 0.008794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.142061 B = 2863.328782 C = 3183.054700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.115 4.115 4 H 0.142 0.858 5 C -0.101 4.101 6 C -0.123 4.123 7 C -0.132 4.132 8 C 0.178 3.822 9 H 0.027 0.973 10 N -0.593 5.593 11 C -0.228 4.228 12 H 0.088 0.912 13 C 0.029 3.971 14 N -0.908 5.908 15 Si 0.874 3.126 16 H -0.293 1.293 17 H -0.310 1.310 18 H -0.259 1.259 19 C 0.134 3.866 20 C 0.045 3.955 21 O -0.349 6.349 22 C 0.032 3.968 23 C -0.092 4.092 24 H 0.039 0.961 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.038 0.962 31 H 0.036 0.964 32 H 0.085 0.915 33 H 0.047 0.953 34 H 0.047 0.953 35 H 0.259 0.741 36 H 0.060 0.940 37 H 0.055 0.945 38 H 0.027 0.973 39 H 0.037 0.963 40 H 0.078 0.922 41 H 0.026 0.974 42 H 0.029 0.971 43 H 0.040 0.960 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.662 0.171 7.478 9.382 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.149 4.149 3 C -0.132 4.132 4 H 0.159 0.841 5 C -0.139 4.139 6 C -0.160 4.160 7 C -0.171 4.171 8 C 0.071 3.929 9 H 0.045 0.955 10 N -0.316 5.316 11 C -0.356 4.356 12 H 0.105 0.895 13 C -0.169 4.169 14 N -0.552 5.552 15 Si 0.708 3.292 16 H -0.222 1.222 17 H -0.240 1.240 18 H -0.185 1.185 19 C 0.008 3.992 20 C -0.035 4.035 21 O -0.267 6.267 22 C -0.066 4.066 23 C -0.129 4.129 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.055 0.945 40 H 0.097 0.903 41 H 0.044 0.956 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.347 0.060 7.312 9.059 hybrid contribution 0.103 1.231 0.368 1.289 sum 5.451 1.291 7.680 9.506 Atomic orbital electron populations 1.21781 0.96790 1.00086 1.02004 1.21492 0.95291 0.98030 1.00128 1.21923 0.95593 0.94939 1.00783 0.84067 1.21481 0.99247 0.95627 0.97535 1.21648 0.95946 0.97358 1.01076 1.22017 0.96609 0.99850 0.98659 1.20378 0.94490 0.91876 0.86120 0.95521 1.44063 1.53468 1.06579 1.27472 1.18593 1.03681 0.96418 1.16914 0.89451 1.25220 0.97207 0.97128 0.97354 1.69782 1.25735 1.39233 1.20404 0.87104 0.75915 0.85857 0.80328 1.22186 1.23953 1.18455 1.21293 0.94001 0.87860 0.96067 1.23257 1.00522 0.94296 0.85390 1.88267 1.32486 1.79915 1.26030 1.22643 0.89107 0.98886 0.95951 1.21424 0.96338 0.95274 0.99884 0.94183 0.93313 0.92101 0.92622 0.94087 0.93215 0.94275 0.94548 0.89661 0.93390 0.93449 0.93134 0.92275 0.92734 0.95503 0.94512 0.90338 0.95573 0.95236 0.94107 0.92007 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.46 9.67 37.16 0.36 -2.11 16 2 C -0.11 -1.93 5.40 -26.73 -0.14 -2.08 16 3 C -0.11 -2.21 1.64 -90.62 -0.15 -2.36 16 4 H 0.14 3.33 4.45 -51.93 -0.23 3.10 16 5 C -0.10 -1.80 4.96 -26.73 -0.13 -1.93 16 6 C -0.12 -2.27 5.77 -26.73 -0.15 -2.42 16 7 C -0.13 -2.29 5.26 -26.73 -0.14 -2.43 16 8 C 0.18 3.42 3.31 -67.93 -0.22 3.20 16 9 H 0.03 0.51 8.14 -51.92 -0.42 0.09 16 10 N -0.59 -13.24 1.50 -165.66 -0.25 -13.49 16 11 C -0.23 -5.90 6.04 -15.06 -0.09 -5.99 16 12 H 0.09 2.47 6.06 -52.48 -0.32 2.15 16 13 C 0.03 0.82 5.23 -17.43 -0.09 0.72 16 14 N -0.91 -27.30 13.97 55.49 0.78 -26.53 16 15 Si 0.87 21.96 23.73 -169.99 -4.03 17.92 16 16 H -0.29 -7.46 6.80 56.52 0.38 -7.07 16 17 H -0.31 -8.11 7.11 56.52 0.40 -7.70 16 18 H -0.26 -6.02 4.71 56.52 0.27 -5.75 16 19 C 0.13 2.86 4.38 -4.04 -0.02 2.84 16 20 C 0.04 0.87 6.29 37.16 0.23 1.11 16 21 O -0.35 -7.71 10.36 -35.23 -0.36 -8.08 16 22 C 0.03 0.53 11.01 101.05 1.11 1.64 16 23 C -0.09 -1.72 4.20 -26.73 -0.11 -1.83 16 24 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.76 6.56 -51.93 -0.34 0.42 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.57 16 28 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.05 0.87 6.57 -51.92 -0.34 0.53 16 30 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.04 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.09 1.83 4.34 -51.93 -0.23 1.61 16 33 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.80 6.68 -51.93 -0.35 0.45 16 35 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 36 H 0.06 1.42 2.46 -51.93 -0.13 1.29 16 37 H 0.05 1.04 6.43 -51.93 -0.33 0.71 16 38 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 1.26 7.07 -51.93 -0.37 0.89 16 LS Contribution 314.25 15.07 4.74 4.74 Total: -1.00 -28.96 314.25 -6.53 -35.49 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -7.84 Total: 1.59 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 0.45 Total: -11.64 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: 0.53 Total: -40.01 kcal Atomic # 8 Polarization: -7.71 SS G_CDS: -0.36 Total: -8.08 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.03 Total: 17.92 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.96 -6.53 -35.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317200624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.025 kcal (2) G-P(sol) polarization free energy of solvation -28.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds