Wall clock time and date at job start Mon Mar 30 2020 07:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.46770 * 2 1 4 4 H 1.08998 * 109.47368 * 304.99673 * 3 2 1 5 5 C 1.52997 * 109.47334 * 65.00352 * 3 2 1 6 6 C 1.52999 * 109.46971 * 179.97438 * 5 3 2 7 7 C 1.53004 * 109.47019 * 299.99386 * 6 5 3 8 8 C 1.52997 * 109.46748 * 60.00477 * 7 6 5 9 9 H 1.09007 * 109.46878 * 180.02562 * 8 7 6 10 10 N 1.46501 * 109.47314 * 60.00166 * 8 7 6 11 11 C 1.36935 * 119.99769 * 239.33442 * 10 8 7 12 12 H 1.08003 * 120.00368 * 327.34976 * 11 10 8 13 13 C 1.38813 * 120.00008 * 147.33579 * 11 10 8 14 14 N 1.31620 * 120.00055 * 163.59766 * 13 11 10 15 15 Si 1.86803 * 120.00056 * 343.61104 * 13 11 10 16 16 H 1.48491 * 109.47057 * 95.66835 * 15 13 11 17 17 H 1.48497 * 109.46695 * 215.67123 * 15 13 11 18 18 H 1.48500 * 109.46579 * 335.66831 * 15 13 11 19 19 C 1.46495 * 120.00300 * 59.33604 * 10 8 7 20 20 C 1.53003 * 109.46947 * 84.10828 * 19 10 8 21 21 O 1.42895 * 109.47017 * 62.67044 * 20 19 10 22 22 C 1.42902 * 113.99977 * 179.97438 * 21 20 19 23 23 C 1.52998 * 109.47334 * 299.99455 * 8 7 6 24 24 H 1.09002 * 109.47028 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46869 * 299.99957 * 1 2 3 26 26 H 1.09002 * 109.47135 * 59.99753 * 1 2 3 27 27 H 1.09003 * 109.46869 * 240.00043 * 2 1 3 28 28 H 1.08996 * 109.46632 * 119.99767 * 2 1 3 29 29 H 1.09007 * 109.46878 * 299.99260 * 5 3 2 30 30 H 1.08998 * 109.47447 * 59.99369 * 5 3 2 31 31 H 1.09010 * 109.47153 * 179.97438 * 6 5 3 32 32 H 1.08995 * 109.47505 * 60.00016 * 6 5 3 33 33 H 1.08998 * 109.47076 * 300.00336 * 7 6 5 34 34 H 1.09002 * 109.47017 * 180.02562 * 7 6 5 35 35 H 0.96995 * 120.00106 * 180.02562 * 14 13 11 36 36 H 1.09001 * 109.47302 * 204.10989 * 19 10 8 37 37 H 1.09001 * 109.47238 * 324.11215 * 19 10 8 38 38 H 1.09005 * 109.46645 * 182.66841 * 20 19 10 39 39 H 1.09000 * 109.47271 * 302.66982 * 20 19 10 40 40 H 1.09006 * 109.47117 * 179.97438 * 22 21 20 41 41 H 1.08992 * 109.47418 * 300.00523 * 22 21 20 42 42 H 1.09004 * 109.46693 * 60.00662 * 22 21 20 43 43 H 1.08998 * 109.47368 * 300.00679 * 23 8 7 44 44 H 1.08997 * 109.47287 * 180.02562 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1265 1.3073 6 6 2.1457 3.5688 1.3075 7 6 3.6706 3.5701 1.1821 8 6 4.0753 2.8861 -0.1252 9 1 5.1617 2.8866 -0.2143 10 7 3.4917 3.6110 -1.2567 11 6 2.6428 2.9677 -2.1173 12 1 2.7810 1.9175 -2.3280 13 6 1.6044 3.6654 -2.7189 14 7 0.9948 3.1607 -3.7705 15 14 1.0726 5.3209 -2.0362 16 1 1.7483 6.4073 -2.7899 17 1 -0.3990 5.4635 -2.1744 18 1 1.4458 5.4075 -0.6014 19 6 3.8162 5.0239 -1.4674 20 6 5.1326 5.1352 -2.2392 21 8 4.9808 4.5377 -3.5284 22 6 6.1592 4.5889 -4.3351 23 6 3.5649 1.4438 -0.1255 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 0.5489 2.1253 1.3969 30 1 2.0698 1.5875 2.1492 31 1 1.8570 4.0564 2.2388 32 1 1.7115 4.1081 0.4658 33 1 4.1048 3.0308 2.0240 34 1 4.0344 4.5977 1.1827 35 1 0.2694 3.6483 -4.1911 36 1 3.0187 5.4986 -2.0389 37 1 3.9176 5.5212 -0.5027 38 1 5.3983 6.1860 -2.3547 39 1 5.9205 4.6194 -1.6902 40 1 5.9622 4.1148 -5.2967 41 1 6.4459 5.6283 -4.4941 42 1 6.9686 4.0619 -3.8298 43 1 3.9991 0.9045 0.7164 44 1 3.8536 0.9563 -1.0566 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000317200624.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:52 Heat of formation + Delta-G solvation = -43.083800 kcal Electronic energy + Delta-G solvation = -21516.656353 eV Core-core repulsion = 18662.143655 eV Total energy + Delta-G solvation = -2854.512698 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54332 -38.59993 -36.37871 -34.47223 -33.15552 -31.74391 -29.68405 -29.52806 -27.10287 -25.49275 -24.57153 -23.36697 -22.75672 -21.01457 -19.91953 -18.47406 -17.69844 -17.10247 -16.42168 -16.26663 -15.79441 -15.73540 -15.47129 -14.94899 -14.53904 -14.24690 -14.02680 -13.89729 -13.49058 -13.30086 -13.15088 -13.01514 -12.65260 -12.63510 -12.27912 -12.17171 -12.09865 -11.99820 -11.75422 -11.58309 -11.53344 -11.07835 -10.86870 -10.59225 -10.49735 -10.39782 -10.20497 -8.55536 -7.91212 -5.21021 1.35500 1.44612 1.53719 2.58467 3.10423 3.25481 3.50486 4.05771 4.09293 4.17379 4.28464 4.37198 4.44053 4.48979 4.53493 4.58265 4.58504 4.65564 4.70785 4.73410 4.82437 4.86411 4.89235 4.92544 5.00029 5.01867 5.06202 5.12898 5.15363 5.25783 5.32417 5.34879 5.44868 5.66387 5.68378 5.71644 5.84719 6.12533 6.23494 6.40546 6.56898 7.18514 7.87431 8.24269 9.28393 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.018811 B = 0.009776 C = 0.008794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.142061 B = 2863.328782 C = 3183.054700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.114 4.114 4 H 0.092 0.908 5 C -0.097 4.097 6 C -0.126 4.126 7 C -0.123 4.123 8 C 0.170 3.830 9 H 0.039 0.961 10 N -0.601 5.601 11 C -0.174 4.174 12 H 0.053 0.947 13 C -0.032 4.032 14 N -0.966 5.966 15 Si 0.925 3.075 16 H -0.301 1.301 17 H -0.334 1.334 18 H -0.227 1.227 19 C 0.125 3.875 20 C 0.047 3.953 21 O -0.401 6.401 22 C 0.029 3.971 23 C -0.089 4.089 24 H 0.061 0.939 25 H 0.061 0.939 26 H 0.026 0.974 27 H 0.038 0.962 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.066 0.934 31 H 0.059 0.941 32 H 0.049 0.951 33 H 0.078 0.922 34 H 0.057 0.943 35 H 0.249 0.751 36 H 0.032 0.968 37 H 0.084 0.916 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.046 0.954 43 H 0.072 0.928 44 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.725 0.554 10.851 13.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.146 4.146 3 C -0.132 4.132 4 H 0.110 0.890 5 C -0.134 4.134 6 C -0.164 4.164 7 C -0.162 4.162 8 C 0.065 3.935 9 H 0.057 0.943 10 N -0.325 5.325 11 C -0.304 4.304 12 H 0.070 0.930 13 C -0.225 4.225 14 N -0.614 5.614 15 Si 0.760 3.240 16 H -0.231 1.231 17 H -0.265 1.265 18 H -0.151 1.151 19 C 0.000 4.000 20 C -0.032 4.032 21 O -0.320 6.320 22 C -0.068 4.068 23 C -0.126 4.126 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.046 0.954 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.049 0.951 37 H 0.102 0.898 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.091 0.909 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 7.468 0.463 10.741 13.090 hybrid contribution -0.405 1.011 -0.654 1.270 sum 7.063 1.474 10.087 12.402 Atomic orbital electron populations 1.21736 0.96388 1.01182 1.00944 1.21454 0.95653 0.96942 1.00593 1.21700 0.95742 0.95710 1.00048 0.88991 1.21437 0.99404 0.95483 0.97086 1.21648 0.96672 0.97352 1.00684 1.21932 0.95793 1.00575 0.97945 1.20613 0.94867 0.91840 0.86177 0.94288 1.44170 1.52930 1.07171 1.28204 1.18293 1.02507 0.94705 1.14944 0.92963 1.25662 0.98312 1.00255 0.98255 1.69928 1.27378 1.41079 1.23013 0.86277 0.73798 0.82434 0.81468 1.23127 1.26492 1.15106 1.21418 0.94248 0.86893 0.97481 1.23227 0.99519 0.95969 0.84512 1.88188 1.35494 1.80729 1.27543 1.22798 0.87925 1.00656 0.95407 1.21405 0.96077 0.95395 0.99756 0.92034 0.92039 0.95437 0.94341 0.91251 0.93401 0.91504 0.92226 0.93199 0.90333 0.92442 0.94199 0.95071 0.89791 0.92904 0.92799 0.90466 0.93295 0.93524 0.90926 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.71 9.67 71.98 0.70 -4.02 16 2 C -0.11 -3.65 5.40 30.59 0.17 -3.48 16 3 C -0.11 -4.27 1.64 -10.79 -0.02 -4.29 16 4 H 0.09 4.46 4.45 -2.39 -0.01 4.45 16 5 C -0.10 -3.12 4.96 30.59 0.15 -2.97 16 6 C -0.13 -4.19 5.77 30.59 0.18 -4.01 16 7 C -0.12 -3.69 5.26 30.59 0.16 -3.53 16 8 C 0.17 6.06 3.31 44.99 0.15 6.21 16 9 H 0.04 1.33 8.14 -2.38 -0.02 1.31 16 10 N -0.60 -26.21 1.50 -678.03 -1.02 -27.23 16 11 C -0.17 -9.30 6.04 84.03 0.51 -8.80 16 12 H 0.05 3.14 6.06 -2.91 -0.02 3.12 16 13 C -0.03 -1.87 5.23 84.86 0.44 -1.42 16 14 N -0.97 -61.86 13.97 21.65 0.30 -61.56 16 15 Si 0.92 47.08 23.73 68.60 1.63 48.70 16 16 H -0.30 -15.48 6.80 99.48 0.68 -14.80 16 17 H -0.33 -17.97 7.11 99.48 0.71 -17.26 16 18 H -0.23 -10.19 4.71 99.48 0.47 -9.72 16 19 C 0.12 5.09 4.38 86.38 0.38 5.46 16 20 C 0.05 1.69 6.29 71.98 0.45 2.14 16 21 O -0.40 -17.40 10.36 -148.98 -1.54 -18.95 16 22 C 0.03 0.91 11.01 113.37 1.25 2.16 16 23 C -0.09 -3.16 4.20 30.60 0.13 -3.03 16 24 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.81 6.56 -2.39 -0.02 1.80 16 26 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.05 1.55 6.57 -2.38 -0.02 1.53 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.06 1.71 8.14 -2.38 -0.02 1.69 16 32 H 0.05 2.02 4.34 -2.39 -0.01 2.01 16 33 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.06 1.62 6.68 -2.39 -0.02 1.61 16 35 H 0.25 15.61 8.31 -92.71 -0.77 14.84 16 36 H 0.03 1.48 2.46 -2.39 -0.01 1.47 16 37 H 0.08 2.89 6.43 -2.39 -0.02 2.88 16 38 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.08 2.41 8.14 -2.38 -0.02 2.39 16 41 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.03 1.36 7.07 -2.39 -0.02 1.35 16 Total: -1.00 -66.89 314.25 4.69 -62.19 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: 0.69 Total: 16.41 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 4.64 Total: -19.58 kcal Atomic # 7 Polarization: -88.07 SS G_CDS: -0.72 Total: -88.79 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: -1.54 Total: -18.95 kcal Atomic # 14 Polarization: 47.08 SS G_CDS: 1.63 Total: 48.70 kcal Total: -66.89 4.69 -62.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000317200624.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.109 kcal (2) G-P(sol) polarization free energy of solvation -66.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds