Wall clock time and date at job start Mon Mar 30 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 C 1.52998 * 109.47610 * 120.00079 * 2 1 3 5 5 H 1.09005 * 109.47018 * 305.85267 * 4 2 1 6 6 N 1.46895 * 109.47577 * 185.84853 * 4 2 1 7 7 C 1.46903 * 110.99899 * 304.25602 * 6 4 2 8 8 C 1.53003 * 109.47097 * 175.62138 * 7 6 4 9 9 O 1.42902 * 109.46641 * 65.00693 * 8 7 6 10 10 C 1.42896 * 113.99856 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47420 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00069 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00278 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99907 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00040 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47241 * 60.00024 * 15 13 11 17 17 H 1.48495 * 109.46867 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46905 * 300.00089 * 15 13 11 19 19 C 1.53003 * 109.47243 * 65.84544 * 4 2 1 20 20 C 1.53784 * 113.61163 * 279.14060 * 19 4 2 21 21 C 1.53960 * 87.01872 * 220.04546 * 20 19 4 22 22 C 1.53781 * 113.61508 * 181.53589 * 19 4 2 23 23 H 1.08992 * 109.46814 * 299.99734 * 1 2 3 24 24 H 1.08999 * 109.47249 * 60.00473 * 1 2 3 25 25 H 1.08997 * 109.46760 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47214 * 240.00089 * 2 1 3 27 27 H 1.09003 * 109.47276 * 175.30938 * 3 2 1 28 28 H 1.09006 * 109.47230 * 295.30565 * 3 2 1 29 29 H 1.08997 * 109.47388 * 55.31126 * 3 2 1 30 30 H 1.00901 * 111.00131 * 68.21062 * 6 4 2 31 31 H 1.09004 * 109.46673 * 55.62443 * 7 6 4 32 32 H 1.08999 * 109.47251 * 295.62893 * 7 6 4 33 33 H 1.09000 * 109.46657 * 184.99995 * 8 7 6 34 34 H 1.08995 * 109.47398 * 305.00498 * 8 7 6 35 35 H 1.09002 * 109.47038 * 299.99851 * 10 9 8 36 36 H 1.09007 * 109.47676 * 59.99445 * 10 9 8 37 37 H 0.97003 * 120.00017 * 179.97438 * 14 13 11 38 38 H 1.08997 * 112.85046 * 50.33241 * 19 4 2 39 39 H 1.08993 * 113.62028 * 334.56927 * 20 19 4 40 40 H 1.09009 * 113.61285 * 105.46925 * 20 19 4 41 41 H 1.09001 * 113.53754 * 270.81242 * 21 20 19 42 42 H 1.08996 * 113.73899 * 139.94558 * 21 20 19 43 43 H 1.09000 * 113.60984 * 254.52526 * 22 19 4 44 44 H 1.08999 * 113.61382 * 25.43295 * 22 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5938 -0.2715 2.1361 6 7 3.5023 -0.6002 1.3218 7 6 4.1339 -1.1057 0.0956 8 6 5.6432 -0.8638 0.1623 9 8 6.2034 -1.6397 1.2235 10 6 7.6161 -1.4853 1.3732 11 6 8.0970 -2.3434 2.5149 12 1 7.3941 -2.9460 3.0710 13 6 9.4345 -2.3591 2.8497 14 7 10.2904 -1.6250 2.1730 15 14 10.0307 -3.4233 4.2645 16 1 9.7152 -4.8463 3.9807 17 1 11.4987 -3.2628 4.4201 18 1 9.3520 -3.0062 5.5178 19 6 1.6537 -2.1999 1.1779 20 6 0.2022 -2.4784 1.6029 21 6 0.7364 -3.7350 2.3142 22 6 2.0895 -3.0106 2.4099 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1267 1.4437 0.0840 28 1 1.7469 1.9315 -0.9291 29 1 1.6097 1.9800 0.8450 30 1 3.7776 0.3533 1.5038 31 1 3.7202 -0.5843 -0.7676 32 1 3.9409 -2.1743 0.0014 33 1 6.1002 -1.1572 -0.7827 34 1 5.8340 0.1936 0.3454 35 1 8.1145 -1.7912 0.4534 36 1 7.8475 -0.4407 1.5817 37 1 11.2313 -1.6358 2.4088 38 1 1.9279 -2.6639 0.2305 39 1 -0.2046 -1.7309 2.2838 40 1 -0.4629 -2.6979 0.7675 41 1 0.7586 -4.6194 1.6774 42 1 0.2718 -3.9221 3.2823 43 1 2.9459 -3.6591 2.2251 44 1 2.1997 -2.4088 3.3119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324737350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:47 Heat of formation + Delta-G solvation = -44.230243 kcal Electronic energy + Delta-G solvation = -19768.856360 eV Core-core repulsion = 16914.293948 eV Total energy + Delta-G solvation = -2854.562412 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.81240 -37.07105 -36.12377 -33.37040 -32.48725 -29.20479 -27.79839 -26.83723 -25.72634 -25.23448 -22.83788 -22.32050 -21.91460 -19.40801 -19.07337 -16.47108 -15.95084 -15.79403 -15.52218 -15.25142 -14.68063 -14.35879 -14.13712 -13.96142 -13.30069 -12.87890 -12.75592 -12.38974 -12.32176 -12.19832 -11.94340 -11.75205 -11.59899 -11.54320 -11.11580 -10.98392 -10.78739 -10.75323 -10.61208 -10.41346 -10.26871 -10.08970 -9.91433 -9.83133 -9.03181 -8.73367 -8.08241 -7.98078 -6.04426 -4.05193 3.36987 3.39024 3.43588 4.28982 4.41282 4.58190 4.69584 4.87393 4.90922 4.91688 5.00272 5.08183 5.16639 5.32024 5.45937 5.48295 5.50202 5.55410 5.67371 5.70975 5.74645 5.77061 5.84837 5.90647 5.93144 5.96695 6.00933 6.05158 6.15082 6.17937 6.27196 6.37408 6.40358 6.49923 6.67132 7.17492 7.33524 7.50715 7.68562 7.87454 8.24173 8.69647 9.09611 9.59468 11.07295 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024661 B = 0.004487 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.103388 B = 6238.779299 C = 7116.562042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.132 4.132 3 C -0.152 4.152 4 C 0.103 3.897 5 H 0.078 0.922 6 N -0.665 5.665 7 C 0.061 3.939 8 C 0.064 3.936 9 O -0.378 6.378 10 C 0.194 3.806 11 C -0.510 4.510 12 H 0.066 0.934 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.907 3.093 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.098 4.098 20 C -0.133 4.133 21 C -0.150 4.150 22 C -0.115 4.115 23 H 0.051 0.949 24 H 0.046 0.954 25 H 0.065 0.935 26 H 0.071 0.929 27 H 0.055 0.945 28 H 0.052 0.948 29 H 0.055 0.945 30 H 0.338 0.662 31 H 0.037 0.963 32 H 0.077 0.923 33 H 0.037 0.963 34 H 0.031 0.969 35 H 0.001 0.999 36 H 0.002 0.998 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.069 0.931 44 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.387 2.762 -4.558 21.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.152 4.152 3 C -0.210 4.210 4 C -0.007 4.007 5 H 0.096 0.904 6 N -0.295 5.295 7 C -0.068 4.068 8 C -0.015 4.015 9 O -0.298 6.298 10 C 0.119 3.881 11 C -0.548 4.548 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.541 5.541 15 Si 0.734 3.266 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.116 4.116 20 C -0.171 4.171 21 C -0.188 4.188 22 C -0.153 4.153 23 H 0.071 0.929 24 H 0.066 0.934 25 H 0.083 0.917 26 H 0.089 0.911 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.158 0.842 31 H 0.055 0.945 32 H 0.095 0.905 33 H 0.055 0.945 34 H 0.050 0.950 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.101 0.899 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.093 0.907 42 H 0.080 0.920 43 H 0.088 0.912 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.180 2.097 -4.087 20.696 hybrid contribution 0.489 0.507 -0.253 0.748 sum -19.691 2.604 -4.340 20.331 Atomic orbital electron populations 1.21941 0.95171 1.02339 1.01123 1.21859 0.96409 0.96442 1.00527 1.21896 1.01199 0.96181 1.01676 1.21667 0.88326 0.94678 0.96074 0.90434 1.60485 1.05606 1.26793 1.36623 1.22043 0.93192 1.01060 0.90465 1.22264 0.92580 0.94911 0.91699 1.87963 1.24978 1.66137 1.50706 1.20166 0.75479 0.96121 0.96303 1.21032 0.92843 1.25914 1.15004 0.91566 1.24941 0.96328 0.96059 0.97205 1.69958 1.03100 1.40322 1.40709 0.86412 0.77271 0.80680 0.82205 1.20051 1.21251 1.20015 1.22491 0.95373 0.94678 0.99085 1.23046 0.96186 0.98039 0.99793 1.22939 0.98348 0.97125 1.00366 1.22678 0.96289 0.98184 0.98135 0.92949 0.93440 0.91650 0.91109 0.92558 0.92848 0.92618 0.84206 0.94543 0.90473 0.94476 0.95043 0.98109 0.97998 0.92724 0.89907 0.90350 0.91939 0.90735 0.91953 0.91232 0.90005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 8.56 37.16 0.32 -0.95 16 2 C -0.13 -1.31 1.90 -90.62 -0.17 -1.48 16 3 C -0.15 -1.47 8.67 37.16 0.32 -1.14 16 4 C 0.10 1.19 1.98 -67.71 -0.13 1.05 16 5 H 0.08 0.90 7.98 -51.93 -0.41 0.48 16 6 N -0.66 -9.61 5.99 -106.72 -0.64 -10.25 16 7 C 0.06 0.92 5.02 -3.82 -0.02 0.91 16 8 C 0.06 1.20 6.18 37.16 0.23 1.43 16 9 O -0.38 -9.35 10.27 -35.23 -0.36 -9.71 16 10 C 0.19 5.46 5.69 36.00 0.20 5.66 16 11 C -0.51 -15.37 9.43 -34.44 -0.32 -15.70 16 12 H 0.07 1.99 7.81 -52.48 -0.41 1.58 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.48 13.29 55.43 0.74 -26.74 16 15 Si 0.91 22.29 29.54 -169.99 -5.02 17.27 16 16 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 17 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 C -0.10 -1.12 2.32 -89.80 -0.21 -1.33 16 20 C -0.13 -1.27 5.54 -25.82 -0.14 -1.41 16 21 C -0.15 -1.58 8.09 -25.82 -0.21 -1.79 16 22 C -0.12 -1.50 7.44 -25.92 -0.19 -1.69 16 23 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.54 5.01 -51.93 -0.26 0.28 16 26 H 0.07 0.76 6.60 -51.93 -0.34 0.41 16 27 H 0.06 0.59 6.01 -51.93 -0.31 0.28 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.34 4.77 7.08 -39.29 -0.28 4.49 16 31 H 0.04 0.47 5.73 -51.93 -0.30 0.17 16 32 H 0.08 1.23 6.91 -51.93 -0.36 0.87 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.03 0.57 8.12 -51.93 -0.42 0.15 16 35 H 0.00 0.03 8.14 -51.93 -0.42 -0.39 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 38 H 0.08 1.00 7.30 -51.93 -0.38 0.62 16 39 H 0.08 0.71 7.99 -51.93 -0.41 0.30 16 40 H 0.06 0.54 7.10 -51.92 -0.37 0.17 16 41 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.08 1.13 8.10 -51.93 -0.42 0.71 16 LS Contribution 338.15 15.07 5.10 5.10 Total: -1.00 -31.05 338.15 -8.66 -39.71 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -8.04 Total: -0.46 kcal Atomic # 6 Polarization: -14.48 SS G_CDS: -0.43 Total: -14.91 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.10 Total: -36.99 kcal Atomic # 8 Polarization: -9.35 SS G_CDS: -0.36 Total: -9.71 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -31.05 -8.66 -39.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324737350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.524 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds