Wall clock time and date at job start Mon Mar 30 2020 06:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47011 * 2 1 4 4 C 1.52998 * 109.47610 * 120.00079 * 2 1 3 5 5 H 1.09005 * 109.47018 * 305.85267 * 4 2 1 6 6 N 1.46895 * 109.47577 * 185.84853 * 4 2 1 7 7 C 1.46903 * 110.99899 * 304.25602 * 6 4 2 8 8 C 1.53003 * 109.47097 * 175.62138 * 7 6 4 9 9 O 1.42902 * 109.46641 * 65.00693 * 8 7 6 10 10 C 1.42896 * 113.99856 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47420 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00069 * 359.97438 * 11 10 9 13 13 C 1.37878 * 120.00278 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99907 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00040 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47241 * 60.00024 * 15 13 11 17 17 H 1.48495 * 109.46867 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.46905 * 300.00089 * 15 13 11 19 19 C 1.53003 * 109.47243 * 65.84544 * 4 2 1 20 20 C 1.53784 * 113.61163 * 279.14060 * 19 4 2 21 21 C 1.53960 * 87.01872 * 220.04546 * 20 19 4 22 22 C 1.53781 * 113.61508 * 181.53589 * 19 4 2 23 23 H 1.08992 * 109.46814 * 299.99734 * 1 2 3 24 24 H 1.08999 * 109.47249 * 60.00473 * 1 2 3 25 25 H 1.08997 * 109.46760 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47214 * 240.00089 * 2 1 3 27 27 H 1.09003 * 109.47276 * 175.30938 * 3 2 1 28 28 H 1.09006 * 109.47230 * 295.30565 * 3 2 1 29 29 H 1.08997 * 109.47388 * 55.31126 * 3 2 1 30 30 H 1.00901 * 111.00131 * 68.21062 * 6 4 2 31 31 H 1.09004 * 109.46673 * 55.62443 * 7 6 4 32 32 H 1.08999 * 109.47251 * 295.62893 * 7 6 4 33 33 H 1.09000 * 109.46657 * 184.99995 * 8 7 6 34 34 H 1.08995 * 109.47398 * 305.00498 * 8 7 6 35 35 H 1.09002 * 109.47038 * 299.99851 * 10 9 8 36 36 H 1.09007 * 109.47676 * 59.99445 * 10 9 8 37 37 H 0.97003 * 120.00017 * 179.97438 * 14 13 11 38 38 H 1.08997 * 112.85046 * 50.33241 * 19 4 2 39 39 H 1.08993 * 113.62028 * 334.56927 * 20 19 4 40 40 H 1.09009 * 113.61285 * 105.46925 * 20 19 4 41 41 H 1.09001 * 113.53754 * 270.81242 * 21 20 19 42 42 H 1.08996 * 113.73899 * 139.94558 * 21 20 19 43 43 H 1.09000 * 113.60984 * 254.52526 * 22 19 4 44 44 H 1.08999 * 113.61382 * 25.43295 * 22 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2492 5 1 1.5938 -0.2715 2.1361 6 7 3.5023 -0.6002 1.3218 7 6 4.1339 -1.1057 0.0956 8 6 5.6432 -0.8638 0.1623 9 8 6.2034 -1.6397 1.2235 10 6 7.6161 -1.4853 1.3732 11 6 8.0970 -2.3434 2.5149 12 1 7.3941 -2.9460 3.0710 13 6 9.4345 -2.3591 2.8497 14 7 10.2904 -1.6250 2.1730 15 14 10.0307 -3.4233 4.2645 16 1 9.7152 -4.8463 3.9807 17 1 11.4987 -3.2628 4.4201 18 1 9.3520 -3.0062 5.5178 19 6 1.6537 -2.1999 1.1779 20 6 0.2022 -2.4784 1.6029 21 6 0.7364 -3.7350 2.3142 22 6 2.0895 -3.0106 2.4099 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 3.1267 1.4437 0.0840 28 1 1.7469 1.9315 -0.9291 29 1 1.6097 1.9800 0.8450 30 1 3.7776 0.3533 1.5038 31 1 3.7202 -0.5843 -0.7676 32 1 3.9409 -2.1743 0.0014 33 1 6.1002 -1.1572 -0.7827 34 1 5.8340 0.1936 0.3454 35 1 8.1145 -1.7912 0.4534 36 1 7.8475 -0.4407 1.5817 37 1 11.2313 -1.6358 2.4088 38 1 1.9279 -2.6639 0.2305 39 1 -0.2046 -1.7309 2.2838 40 1 -0.4629 -2.6979 0.7675 41 1 0.7586 -4.6194 1.6774 42 1 0.2718 -3.9221 3.2823 43 1 2.9459 -3.6591 2.2251 44 1 2.1997 -2.4088 3.3119 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324737350.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:47 Heat of formation + Delta-G solvation = -63.662503 kcal Electronic energy + Delta-G solvation = -19769.699006 eV Core-core repulsion = 16914.293948 eV Total energy + Delta-G solvation = -2855.405058 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.76331 -38.65441 -37.36981 -35.03362 -34.16107 -30.63675 -29.03177 -28.41432 -26.80448 -26.12327 -24.50200 -23.79734 -23.23780 -20.30326 -20.05026 -18.62569 -17.52997 -17.14408 -16.69251 -16.47835 -16.32170 -15.67992 -15.46440 -15.23737 -14.65074 -14.28964 -13.91146 -13.59287 -13.39751 -13.22314 -13.13189 -12.94072 -12.85167 -12.75256 -12.65763 -12.47195 -12.27902 -12.15134 -11.87144 -11.64261 -11.51466 -11.26374 -11.24801 -11.00614 -10.84449 -10.73142 -10.18043 -9.07631 -8.31016 -6.42953 1.39577 1.44717 1.53060 2.35712 3.02567 3.19582 3.30948 3.70997 3.83041 3.97443 4.04783 4.13052 4.21056 4.25677 4.29247 4.32393 4.53502 4.60591 4.63404 4.74460 4.79798 4.84527 4.88164 4.91354 4.95675 4.98525 5.04196 5.09512 5.11055 5.16933 5.20241 5.24504 5.31026 5.43597 5.48447 5.54682 5.56432 5.73675 5.98550 6.23453 6.54668 6.60649 6.87588 7.29306 8.81241 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024661 B = 0.004487 C = 0.003934 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.103388 B = 6238.779299 C = 7116.562042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.126 4.126 3 C -0.151 4.151 4 C 0.107 3.893 5 H 0.080 0.920 6 N -0.686 5.686 7 C 0.077 3.923 8 C 0.054 3.946 9 O -0.393 6.393 10 C 0.209 3.791 11 C -0.546 4.546 12 H 0.059 0.941 13 C 0.007 3.993 14 N -0.932 5.932 15 Si 0.982 3.018 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.266 1.266 19 C -0.098 4.098 20 C -0.117 4.117 21 C -0.144 4.144 22 C -0.128 4.128 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.339 0.661 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.043 0.957 34 H 0.037 0.963 35 H -0.018 1.018 36 H -0.017 1.017 37 H 0.270 0.730 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.972 2.610 -4.307 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.146 4.146 3 C -0.208 4.208 4 C -0.003 4.003 5 H 0.098 0.902 6 N -0.317 5.317 7 C -0.052 4.052 8 C -0.024 4.024 9 O -0.313 6.313 10 C 0.134 3.866 11 C -0.583 4.583 12 H 0.077 0.923 13 C -0.191 4.191 14 N -0.571 5.571 15 Si 0.805 3.195 16 H -0.190 1.190 17 H -0.198 1.198 18 H -0.191 1.191 19 C -0.117 4.117 20 C -0.154 4.154 21 C -0.181 4.181 22 C -0.166 4.166 23 H 0.076 0.924 24 H 0.074 0.926 25 H 0.088 0.912 26 H 0.083 0.917 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.000 1.000 36 H 0.000 1.000 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.056 0.944 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -21.792 1.955 -3.854 22.216 hybrid contribution 0.970 0.604 -0.379 1.204 sum -20.822 2.559 -4.233 21.402 Atomic orbital electron populations 1.21910 0.93639 1.02857 1.01804 1.21773 0.97631 0.96188 0.99019 1.21887 1.00420 0.96120 1.02412 1.21691 0.86453 0.94971 0.97185 0.90191 1.60452 1.07690 1.26986 1.36532 1.21866 0.90458 1.00850 0.92023 1.22626 0.94904 0.94570 0.90253 1.87925 1.22933 1.67451 1.52990 1.19784 0.77336 0.94513 0.95005 1.21343 0.93718 1.27073 1.16205 0.92291 1.25945 0.96056 0.97130 0.99987 1.70063 1.03695 1.41220 1.42132 0.85256 0.77196 0.78770 0.78317 1.19047 1.19829 1.19084 1.22499 0.96972 0.94301 0.97923 1.22970 0.94916 0.97350 1.00197 1.22920 0.96403 0.97658 1.01138 1.22684 0.96688 0.98606 0.98590 0.92416 0.92649 0.91204 0.91690 0.93753 0.91917 0.92122 0.84116 0.91654 0.91517 0.93902 0.94437 1.00030 0.99971 0.92069 0.90513 0.89393 0.90174 0.90324 0.91105 0.94382 0.91191 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.56 71.98 0.62 -1.43 16 2 C -0.13 -2.25 1.90 -10.80 -0.02 -2.27 16 3 C -0.15 -2.63 8.67 71.98 0.62 -2.01 16 4 C 0.11 2.35 1.98 44.92 0.09 2.43 16 5 H 0.08 1.74 7.98 -2.38 -0.02 1.72 16 6 N -0.69 -19.79 5.99 -491.56 -2.94 -22.73 16 7 C 0.08 2.31 5.02 86.30 0.43 2.74 16 8 C 0.05 2.07 6.18 71.98 0.44 2.51 16 9 O -0.39 -20.10 10.27 -148.98 -1.53 -21.63 16 10 C 0.21 12.22 5.69 71.23 0.41 12.62 16 11 C -0.55 -33.72 9.43 25.60 0.24 -33.48 16 12 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 13 C 0.01 0.42 5.46 84.66 0.46 0.88 16 14 N -0.93 -57.30 13.29 21.45 0.28 -57.02 16 15 Si 0.98 45.58 29.54 68.60 2.03 47.60 16 16 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 17 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 18 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 19 C -0.10 -2.17 2.32 -10.27 -0.02 -2.19 16 20 C -0.12 -1.95 5.54 31.18 0.17 -1.78 16 21 C -0.14 -2.83 8.09 31.18 0.25 -2.58 16 22 C -0.13 -3.38 7.44 31.12 0.23 -3.15 16 23 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 24 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.07 0.93 5.01 -2.39 -0.01 0.92 16 26 H 0.06 1.25 6.60 -2.39 -0.02 1.23 16 27 H 0.04 0.88 6.01 -2.39 -0.01 0.86 16 28 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.34 9.56 7.08 -89.69 -0.64 8.92 16 31 H 0.07 1.60 5.73 -2.39 -0.01 1.59 16 32 H 0.07 2.15 6.91 -2.39 -0.02 2.13 16 33 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.04 1.39 8.12 -2.39 -0.02 1.37 16 35 H -0.02 -1.10 8.14 -2.39 -0.02 -1.11 16 36 H -0.02 -1.06 8.14 -2.38 -0.02 -1.08 16 37 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 38 H 0.08 1.80 7.30 -2.39 -0.02 1.78 16 39 H 0.09 1.34 7.99 -2.39 -0.02 1.32 16 40 H 0.08 1.11 7.10 -2.38 -0.02 1.09 16 41 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.07 1.98 8.10 -2.39 -0.02 1.96 16 Total: -1.00 -67.45 338.15 2.08 -65.37 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: 0.31 Total: 16.10 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 3.93 Total: -27.69 kcal Atomic # 7 Polarization: -77.09 SS G_CDS: -2.66 Total: -79.75 kcal Atomic # 8 Polarization: -20.10 SS G_CDS: -1.53 Total: -21.63 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -67.45 2.08 -65.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324737350.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.705 kcal (2) G-P(sol) polarization free energy of solvation -67.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds