Wall clock time and date at job start Mon Mar 30 2020 06:40:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47163 * 2 1 4 4 C 1.53003 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46657 * 305.00088 * 4 3 2 6 6 N 1.46893 * 109.47083 * 65.00039 * 4 3 2 7 7 C 1.46902 * 110.99960 * 65.63657 * 6 4 3 8 8 C 1.52999 * 109.46991 * 181.92745 * 7 6 4 9 9 O 1.42898 * 109.47516 * 64.99746 * 8 7 6 10 10 C 1.42900 * 114.00032 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46961 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00266 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99931 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00096 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00102 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46955 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47083 * 119.99368 * 15 13 11 18 18 H 1.48498 * 109.47097 * 239.99923 * 15 13 11 19 19 C 1.53004 * 109.47235 * 185.00212 * 4 3 2 20 20 C 1.53777 * 113.61583 * 177.03180 * 19 4 3 21 21 C 1.53779 * 87.08176 * 220.01844 * 20 19 4 22 22 C 1.53781 * 87.17043 * 25.39157 * 21 20 19 23 23 H 1.09000 * 109.47374 * 59.99770 * 1 2 3 24 24 H 1.08997 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47429 * 299.99707 * 1 2 3 26 26 H 1.09000 * 109.46571 * 239.99969 * 2 1 3 27 27 H 1.09002 * 109.46907 * 119.99983 * 2 1 3 28 28 H 1.09009 * 109.47193 * 60.00253 * 3 2 1 29 29 H 1.08991 * 109.47410 * 300.00309 * 3 2 1 30 30 H 1.00899 * 111.00404 * 301.68001 * 6 4 3 31 31 H 1.09003 * 109.46772 * 301.91994 * 7 6 4 32 32 H 1.08993 * 109.47290 * 61.92373 * 7 6 4 33 33 H 1.09005 * 109.46918 * 185.00193 * 8 7 6 34 34 H 1.09005 * 109.47025 * 304.99204 * 8 7 6 35 35 H 1.09001 * 109.47338 * 300.00321 * 10 9 8 36 36 H 1.09004 * 109.46973 * 59.99967 * 10 9 8 37 37 H 0.96993 * 120.00598 * 180.02562 * 14 13 11 38 38 H 1.09001 * 112.84518 * 308.23129 * 19 4 3 39 39 H 1.09004 * 113.61380 * 105.46716 * 20 19 4 40 40 H 1.09003 * 113.61421 * 334.56572 * 20 19 4 41 41 H 1.09007 * 113.61005 * 139.97899 * 21 20 19 42 42 H 1.08994 * 113.61528 * 270.79711 * 21 20 19 43 43 H 1.09000 * 113.61652 * 89.16085 * 22 21 20 44 44 H 1.09005 * 113.61031 * 220.05991 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 7 4.0602 0.8570 -1.2542 7 6 3.7028 1.6996 -2.4032 8 6 4.1870 1.0348 -3.6934 9 8 3.4819 -0.1923 -3.8907 10 6 3.8607 -0.8964 -5.0751 11 6 3.0592 -2.1681 -5.1815 12 1 2.3329 -2.4139 -4.4210 13 6 3.2532 -3.0179 -6.2498 14 7 4.1373 -2.7184 -7.1763 15 14 2.2592 -4.5940 -6.3821 16 1 1.3387 -4.6975 -5.2214 17 1 1.4703 -4.5776 -7.6401 18 1 3.1788 -5.7600 -6.3896 19 6 4.0800 2.8795 0.1264 20 6 5.6120 2.9844 0.2095 21 6 5.4009 4.0808 1.2670 22 6 4.0425 3.4247 1.5656 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9563 -0.8899 30 1 3.7144 -0.0833 -1.3739 31 1 2.6203 1.8215 -2.4415 32 1 4.1750 2.6763 -2.2984 33 1 4.0014 1.7001 -4.5367 34 1 5.2554 0.8321 -3.6188 35 1 3.6681 -0.2710 -5.9468 36 1 4.9224 -1.1391 -5.0296 37 1 4.2735 -3.3160 -7.9280 38 1 3.6353 3.5520 -0.6071 39 1 6.0752 3.3464 -0.7084 40 1 6.0906 2.0867 0.6008 41 1 6.1041 4.0268 2.0982 42 1 5.3188 5.0830 0.8465 43 1 4.0912 2.6476 2.3284 44 1 3.2405 4.1418 1.7411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324936990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:50 Heat of formation + Delta-G solvation = -55.365261 kcal Electronic energy + Delta-G solvation = -19570.230493 eV Core-core repulsion = 16715.185230 eV Total energy + Delta-G solvation = -2855.045263 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.60776 -37.09600 -36.00320 -33.46893 -32.59621 -29.97891 -27.55382 -26.40647 -25.74947 -25.36987 -22.43899 -22.02077 -21.79136 -19.95310 -19.05658 -16.49374 -15.92387 -15.82871 -15.41301 -15.31463 -14.76703 -14.45589 -14.27101 -13.90371 -13.38980 -12.99548 -12.92170 -12.65075 -12.42715 -12.05287 -11.82161 -11.64652 -11.53758 -11.25640 -11.16107 -10.96716 -10.78353 -10.75658 -10.51151 -10.48784 -10.38110 -10.23418 -9.99162 -9.91577 -9.07571 -8.80721 -8.14906 -8.03840 -6.09893 -4.11464 3.29364 3.35835 3.41914 4.30425 4.36279 4.56212 4.65148 4.78877 4.94178 5.00988 5.02666 5.08082 5.19660 5.26686 5.39927 5.48577 5.58251 5.63833 5.67254 5.70355 5.75081 5.79215 5.80910 5.87322 5.93923 6.01730 6.06786 6.12939 6.17282 6.24691 6.29222 6.36409 6.40076 6.47113 6.55459 7.13891 7.35483 7.46182 7.76975 7.80550 8.17068 8.60183 9.02265 9.53425 11.01721 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.004391 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.646030 B = 6374.875435 C = 7255.935020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.129 4.129 3 C -0.153 4.153 4 C 0.097 3.903 5 H 0.078 0.922 6 N -0.677 5.677 7 C 0.062 3.938 8 C 0.061 3.939 9 O -0.398 6.398 10 C 0.197 3.803 11 C -0.513 4.513 12 H 0.066 0.934 13 C 0.056 3.944 14 N -0.898 5.898 15 Si 0.906 3.094 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.282 1.282 19 C -0.103 4.103 20 C -0.119 4.119 21 C -0.148 4.148 22 C -0.135 4.135 23 H 0.053 0.947 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.355 0.645 31 H 0.035 0.965 32 H 0.074 0.926 33 H 0.037 0.963 34 H 0.045 0.955 35 H 0.003 0.997 36 H 0.005 0.995 37 H 0.263 0.737 38 H 0.085 0.915 39 H 0.063 0.937 40 H 0.083 0.917 41 H 0.063 0.937 42 H 0.075 0.925 43 H 0.079 0.921 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.209 11.849 16.365 20.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.192 4.192 4 C -0.014 4.014 5 H 0.096 0.904 6 N -0.310 5.310 7 C -0.067 4.067 8 C -0.017 4.017 9 O -0.318 6.318 10 C 0.123 3.877 11 C -0.551 4.551 12 H 0.084 0.916 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.733 3.267 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.208 1.208 19 C -0.122 4.122 20 C -0.156 4.156 21 C -0.185 4.185 22 C -0.173 4.173 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.176 0.824 31 H 0.054 0.946 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.063 0.937 35 H 0.021 0.979 36 H 0.023 0.977 37 H 0.073 0.927 38 H 0.103 0.897 39 H 0.082 0.918 40 H 0.101 0.899 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.638 11.959 16.366 20.280 hybrid contribution -1.227 -0.870 -0.585 1.614 sum -1.865 11.089 15.781 19.377 Atomic orbital electron populations 1.21722 0.96023 1.01555 1.01279 1.21548 0.95948 0.96743 1.02393 1.22309 0.97566 0.97255 1.02077 1.21625 0.91719 0.94598 0.93413 0.90369 1.60671 1.62999 1.06555 1.00748 1.21997 0.98520 0.96331 0.89835 1.22316 0.96240 0.88065 0.95059 1.87782 1.63626 1.33355 1.47082 1.20168 0.95335 0.90983 0.81249 1.21088 1.21816 1.04100 1.08104 0.91602 1.24947 0.95642 0.98600 0.95316 1.69971 1.34221 1.37728 1.11838 0.86307 0.79818 0.82466 0.78060 1.19517 1.20881 1.20829 1.22602 0.96925 0.95908 0.96767 1.22730 0.95818 0.98440 0.98625 1.22868 0.97537 0.98567 0.99556 1.22939 0.97417 0.99960 0.96936 0.92782 0.92797 0.93335 0.91067 0.92312 0.92095 0.91753 0.82414 0.94641 0.90726 0.94454 0.93709 0.97913 0.97669 0.92732 0.89692 0.91795 0.89881 0.91861 0.90664 0.90242 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 9.91 37.16 0.37 -1.35 16 2 C -0.13 -1.59 5.70 -26.73 -0.15 -1.74 16 3 C -0.15 -1.76 4.58 -26.73 -0.12 -1.88 16 4 C 0.10 1.14 2.30 -67.71 -0.16 0.98 16 5 H 0.08 0.92 8.01 -51.93 -0.42 0.50 16 6 N -0.68 -9.91 6.29 -106.73 -0.67 -10.58 16 7 C 0.06 0.95 5.35 -3.82 -0.02 0.93 16 8 C 0.06 1.16 6.27 37.16 0.23 1.39 16 9 O -0.40 -9.52 9.82 -35.23 -0.35 -9.86 16 10 C 0.20 5.45 5.69 36.01 0.20 5.65 16 11 C -0.51 -15.13 9.43 -34.44 -0.32 -15.46 16 12 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.90 -27.07 13.29 55.43 0.74 -26.34 16 15 Si 0.91 21.92 29.54 -169.99 -5.02 16.90 16 16 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C -0.10 -1.08 2.16 -89.72 -0.19 -1.27 16 20 C -0.12 -1.24 7.47 -25.92 -0.19 -1.43 16 21 C -0.15 -1.30 8.08 -25.92 -0.21 -1.51 16 22 C -0.13 -1.20 7.52 -25.83 -0.19 -1.39 16 23 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.07 1.05 6.73 -51.93 -0.35 0.70 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.63 8.04 -51.92 -0.42 0.22 16 29 H 0.06 0.81 6.28 -51.93 -0.33 0.49 16 30 H 0.35 5.87 6.58 -39.29 -0.26 5.62 16 31 H 0.04 0.56 6.27 -51.93 -0.33 0.23 16 32 H 0.07 1.00 6.54 -51.93 -0.34 0.66 16 33 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.43 16 35 H 0.00 0.09 8.14 -51.93 -0.42 -0.34 16 36 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 0.92 7.07 -51.93 -0.37 0.56 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.08 0.92 8.10 -51.93 -0.42 0.50 16 41 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 42 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.69 8.01 -51.93 -0.42 0.27 16 44 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 345.63 15.07 5.21 5.21 Total: -1.00 -29.85 345.63 -9.21 -39.05 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -8.26 Total: 1.18 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: -0.86 Total: -15.56 kcal Atomic # 7 Polarization: -36.98 SS G_CDS: 0.06 Total: -36.92 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.35 Total: -9.86 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.85 -9.21 -39.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324936990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.313 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds