Wall clock time and date at job start Mon Mar 30 2020 06:40:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47163 * 2 1 4 4 C 1.53003 * 109.47163 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.46657 * 305.00088 * 4 3 2 6 6 N 1.46893 * 109.47083 * 65.00039 * 4 3 2 7 7 C 1.46902 * 110.99960 * 65.63657 * 6 4 3 8 8 C 1.52999 * 109.46991 * 181.92745 * 7 6 4 9 9 O 1.42898 * 109.47516 * 64.99746 * 8 7 6 10 10 C 1.42900 * 114.00032 * 179.97438 * 9 8 7 11 11 C 1.50699 * 109.46961 * 179.97438 * 10 9 8 12 12 H 1.07993 * 120.00266 * 0.02562 * 11 10 9 13 13 C 1.37884 * 119.99931 * 180.02562 * 11 10 9 14 14 N 1.31515 * 120.00096 * 359.97438 * 13 11 10 15 15 Si 1.86801 * 120.00102 * 180.02562 * 13 11 10 16 16 H 1.48507 * 109.46955 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47083 * 119.99368 * 15 13 11 18 18 H 1.48498 * 109.47097 * 239.99923 * 15 13 11 19 19 C 1.53004 * 109.47235 * 185.00212 * 4 3 2 20 20 C 1.53777 * 113.61583 * 177.03180 * 19 4 3 21 21 C 1.53779 * 87.08176 * 220.01844 * 20 19 4 22 22 C 1.53781 * 87.17043 * 25.39157 * 21 20 19 23 23 H 1.09000 * 109.47374 * 59.99770 * 1 2 3 24 24 H 1.08997 * 109.47113 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47429 * 299.99707 * 1 2 3 26 26 H 1.09000 * 109.46571 * 239.99969 * 2 1 3 27 27 H 1.09002 * 109.46907 * 119.99983 * 2 1 3 28 28 H 1.09009 * 109.47193 * 60.00253 * 3 2 1 29 29 H 1.08991 * 109.47410 * 300.00309 * 3 2 1 30 30 H 1.00899 * 111.00404 * 301.68001 * 6 4 3 31 31 H 1.09003 * 109.46772 * 301.91994 * 7 6 4 32 32 H 1.08993 * 109.47290 * 61.92373 * 7 6 4 33 33 H 1.09005 * 109.46918 * 185.00193 * 8 7 6 34 34 H 1.09005 * 109.47025 * 304.99204 * 8 7 6 35 35 H 1.09001 * 109.47338 * 300.00321 * 10 9 8 36 36 H 1.09004 * 109.46973 * 59.99967 * 10 9 8 37 37 H 0.96993 * 120.00598 * 180.02562 * 14 13 11 38 38 H 1.09001 * 112.84518 * 308.23129 * 19 4 3 39 39 H 1.09004 * 113.61380 * 105.46716 * 20 19 4 40 40 H 1.09003 * 113.61421 * 334.56572 * 20 19 4 41 41 H 1.09007 * 113.61005 * 139.97899 * 21 20 19 42 42 H 1.08994 * 113.61528 * 270.79711 * 21 20 19 43 43 H 1.09000 * 113.61652 * 89.16085 * 22 21 20 44 44 H 1.09005 * 113.61031 * 220.05991 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9330 0.8531 0.8427 6 7 4.0602 0.8570 -1.2542 7 6 3.7028 1.6996 -2.4032 8 6 4.1870 1.0348 -3.6934 9 8 3.4819 -0.1923 -3.8907 10 6 3.8607 -0.8964 -5.0751 11 6 3.0592 -2.1681 -5.1815 12 1 2.3329 -2.4139 -4.4210 13 6 3.2532 -3.0179 -6.2498 14 7 4.1373 -2.7184 -7.1763 15 14 2.2592 -4.5940 -6.3821 16 1 1.3387 -4.6975 -5.2214 17 1 1.4703 -4.5776 -7.6401 18 1 3.1788 -5.7600 -6.3896 19 6 4.0800 2.8795 0.1264 20 6 5.6120 2.9844 0.2095 21 6 5.4009 4.0808 1.2670 22 6 4.0425 3.4247 1.5656 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9563 -0.8899 30 1 3.7144 -0.0833 -1.3739 31 1 2.6203 1.8215 -2.4415 32 1 4.1750 2.6763 -2.2984 33 1 4.0014 1.7001 -4.5367 34 1 5.2554 0.8321 -3.6188 35 1 3.6681 -0.2710 -5.9468 36 1 4.9224 -1.1391 -5.0296 37 1 4.2735 -3.3160 -7.9280 38 1 3.6353 3.5520 -0.6071 39 1 6.0752 3.3464 -0.7084 40 1 6.0906 2.0867 0.6008 41 1 6.1041 4.0268 2.0982 42 1 5.3188 5.0830 0.8465 43 1 4.0912 2.6476 2.3284 44 1 3.2405 4.1418 1.7411 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324936990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:49 Heat of formation + Delta-G solvation = -73.095768 kcal Electronic energy + Delta-G solvation = -19570.999345 eV Core-core repulsion = 16715.185230 eV Total energy + Delta-G solvation = -2855.814115 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.52578 -38.70046 -37.20976 -35.06431 -34.35341 -31.28109 -29.34281 -27.94169 -26.58081 -26.16615 -24.55243 -23.44379 -22.74438 -20.91115 -19.95727 -18.65112 -17.51547 -17.11300 -16.73694 -16.41036 -16.22993 -16.06970 -15.50863 -15.12758 -14.67802 -14.59013 -13.89648 -13.86690 -13.55813 -13.26285 -13.19050 -12.95147 -12.85094 -12.71966 -12.49922 -12.38736 -12.23164 -12.14641 -11.87897 -11.76431 -11.48589 -11.28401 -11.20770 -11.03142 -10.88500 -10.79167 -10.23283 -9.19946 -8.32759 -6.45085 1.39230 1.40712 1.55206 2.33943 3.01180 3.19474 3.27795 3.71053 3.86111 3.94584 4.07192 4.09128 4.18445 4.23973 4.29860 4.38389 4.48734 4.55481 4.64959 4.72018 4.76838 4.81967 4.89749 4.91742 4.95446 4.97336 5.00733 5.03532 5.11162 5.15910 5.17799 5.23608 5.28486 5.36192 5.44095 5.52060 5.54622 5.72892 5.95266 6.21861 6.49128 6.53152 6.81415 7.26921 8.79950 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024413 B = 0.004391 C = 0.003858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.646030 B = 6374.875435 C = 7255.935020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C -0.144 4.144 4 C 0.099 3.901 5 H 0.082 0.918 6 N -0.685 5.685 7 C 0.076 3.924 8 C 0.054 3.946 9 O -0.406 6.406 10 C 0.211 3.789 11 C -0.545 4.545 12 H 0.062 0.938 13 C 0.006 3.994 14 N -0.931 5.931 15 Si 0.983 3.017 16 H -0.264 1.264 17 H -0.272 1.272 18 H -0.271 1.271 19 C -0.105 4.105 20 C -0.124 4.124 21 C -0.140 4.140 22 C -0.126 4.126 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.067 0.933 26 H 0.040 0.960 27 H 0.068 0.932 28 H 0.080 0.920 29 H 0.052 0.948 30 H 0.341 0.659 31 H 0.032 0.968 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.041 0.959 35 H -0.017 1.017 36 H -0.016 1.016 37 H 0.271 0.729 38 H 0.083 0.917 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.064 12.101 17.824 21.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C -0.183 4.183 4 C -0.011 4.011 5 H 0.100 0.900 6 N -0.316 5.316 7 C -0.053 4.053 8 C -0.024 4.024 9 O -0.326 6.326 10 C 0.136 3.864 11 C -0.583 4.583 12 H 0.080 0.920 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.806 3.194 16 H -0.188 1.188 17 H -0.197 1.197 18 H -0.197 1.197 19 C -0.124 4.124 20 C -0.162 4.162 21 C -0.178 4.178 22 C -0.164 4.164 23 H 0.062 0.938 24 H 0.070 0.930 25 H 0.086 0.914 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.099 0.901 29 H 0.071 0.929 30 H 0.161 0.839 31 H 0.051 0.949 32 H 0.117 0.883 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.001 0.999 36 H 0.001 0.999 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.485 12.244 17.843 21.690 hybrid contribution -0.899 -0.884 -1.019 1.621 sum -2.384 11.360 16.824 20.439 Atomic orbital electron populations 1.21714 0.95346 1.01638 1.01741 1.21527 0.96570 0.97158 1.01331 1.22226 0.97135 0.96616 1.02371 1.21700 0.92002 0.95440 0.91908 0.90011 1.60706 1.63325 1.05899 1.01667 1.21893 0.98363 0.96775 0.88251 1.22621 0.95856 0.86414 0.97467 1.87756 1.64293 1.35211 1.45317 1.19787 0.93835 0.90838 0.81915 1.21397 1.22617 1.05407 1.08853 0.91996 1.25962 0.96538 1.02290 0.94429 1.70077 1.35324 1.39288 1.12364 0.85140 0.78281 0.77499 0.78508 1.18794 1.19674 1.19654 1.22617 0.96808 0.94786 0.98181 1.22735 0.95631 0.98888 0.98951 1.22841 0.97602 0.98251 0.99081 1.22910 0.97783 1.00119 0.95610 0.93760 0.92967 0.91369 0.94162 0.91320 0.90132 0.92924 0.83941 0.94947 0.88337 0.93821 0.94092 0.99885 0.99856 0.92058 0.89853 0.92653 0.90755 0.91051 0.89958 0.89745 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.13 -3.09 5.70 30.59 0.17 -2.92 16 3 C -0.14 -3.13 4.58 30.59 0.14 -2.99 16 4 C 0.10 2.22 2.30 44.92 0.10 2.32 16 5 H 0.08 1.80 8.01 -2.39 -0.02 1.78 16 6 N -0.68 -20.00 6.29 -491.57 -3.09 -23.10 16 7 C 0.08 2.31 5.35 86.30 0.46 2.77 16 8 C 0.05 2.07 6.27 71.98 0.45 2.52 16 9 O -0.41 -20.03 9.82 -148.98 -1.46 -21.49 16 10 C 0.21 12.14 5.69 71.24 0.41 12.54 16 11 C -0.55 -32.86 9.43 25.60 0.24 -32.62 16 12 H 0.06 3.69 7.81 -2.91 -0.02 3.67 16 13 C 0.01 0.36 5.46 84.66 0.46 0.82 16 14 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 15 Si 0.98 44.78 29.54 68.60 2.03 46.81 16 16 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 18 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 19 C -0.11 -2.01 2.16 -10.21 -0.02 -2.03 16 20 C -0.12 -2.43 7.47 31.12 0.23 -2.19 16 21 C -0.14 -2.13 8.08 31.12 0.25 -1.88 16 22 C -0.13 -1.90 7.52 31.18 0.23 -1.67 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 24 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.04 1.22 6.73 -2.39 -0.02 1.20 16 27 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 28 H 0.08 1.45 8.04 -2.38 -0.02 1.44 16 29 H 0.05 1.28 6.28 -2.39 -0.02 1.26 16 30 H 0.34 11.59 6.58 -89.70 -0.59 11.00 16 31 H 0.03 1.01 6.27 -2.39 -0.01 0.99 16 32 H 0.10 2.52 6.54 -2.39 -0.02 2.51 16 33 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 34 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 35 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 36 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 37 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 38 H 0.08 1.64 7.07 -2.39 -0.02 1.62 16 39 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 41 H 0.07 0.98 8.14 -2.38 -0.02 0.97 16 42 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.08 1.21 8.01 -2.39 -0.02 1.19 16 44 H 0.07 0.97 8.14 -2.38 -0.02 0.95 16 Total: -1.00 -64.32 345.63 1.95 -62.36 By element: Atomic # 1 Polarization: 19.32 SS G_CDS: 0.35 Total: 19.67 kcal Atomic # 6 Polarization: -31.71 SS G_CDS: 3.85 Total: -27.86 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -2.81 Total: -79.49 kcal Atomic # 8 Polarization: -20.03 SS G_CDS: -1.46 Total: -21.49 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Total: -64.32 1.95 -62.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324936990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.732 kcal (2) G-P(sol) polarization free energy of solvation -64.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds