Wall clock time and date at job start Mon Mar 30 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47045 * 2 1 4 4 C 1.53003 * 109.47215 * 179.39490 * 3 2 1 5 5 H 1.08995 * 109.46899 * 54.53635 * 4 3 2 6 6 N 1.46901 * 109.46867 * 294.53789 * 4 3 2 7 7 C 1.46895 * 111.00376 * 299.49928 * 6 4 3 8 8 C 1.52999 * 109.47198 * 185.66459 * 7 6 4 9 9 O 1.42897 * 109.47203 * 64.99933 * 8 7 6 10 10 C 1.42901 * 113.99991 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47236 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00123 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00298 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99597 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00136 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46840 * 60.00035 * 15 13 11 17 17 H 1.48495 * 109.47265 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47203 * 299.99935 * 15 13 11 19 19 C 1.52999 * 109.47009 * 174.53923 * 4 3 2 20 20 C 1.53776 * 113.61176 * 279.13543 * 19 4 3 21 21 C 1.53958 * 87.01951 * 220.04842 * 20 19 4 22 22 C 1.53785 * 87.11056 * 25.36822 * 21 20 19 23 23 H 1.09000 * 109.46705 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46893 * 299.99702 * 1 2 3 25 25 H 1.09000 * 109.47006 * 59.99948 * 1 2 3 26 26 H 1.09001 * 109.47181 * 240.00890 * 2 1 3 27 27 H 1.08990 * 109.47115 * 120.00611 * 2 1 3 28 28 H 1.09001 * 109.46508 * 59.39943 * 3 2 1 29 29 H 1.09000 * 109.47502 * 299.40138 * 3 2 1 30 30 H 1.00903 * 111.00324 * 63.45333 * 6 4 3 31 31 H 1.08998 * 109.46948 * 65.66298 * 7 6 4 32 32 H 1.09002 * 109.47252 * 305.66436 * 7 6 4 33 33 H 1.09008 * 109.47266 * 184.99721 * 8 7 6 34 34 H 1.08994 * 109.47067 * 304.99541 * 8 7 6 35 35 H 1.08995 * 109.47244 * 300.00296 * 10 9 8 36 36 H 1.09004 * 109.46889 * 60.00491 * 10 9 8 37 37 H 0.96998 * 119.99737 * 180.02562 * 14 13 11 38 38 H 1.08997 * 112.84857 * 50.33492 * 19 4 3 39 39 H 1.09000 * 113.61879 * 334.56746 * 20 19 4 40 40 H 1.08998 * 113.61596 * 105.47770 * 20 19 4 41 41 H 1.08991 * 113.54190 * 270.81451 * 21 20 19 42 42 H 1.09004 * 113.74190 * 139.94429 * 21 20 19 43 43 H 1.09003 * 113.60999 * 220.09199 * 22 21 20 44 44 H 1.08990 * 113.62106 * 89.18386 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0152 5 1 3.9416 0.8435 -0.8160 6 7 4.0470 0.8719 1.2820 7 6 3.5744 1.6620 2.4266 8 6 4.2038 1.1235 3.7129 9 8 5.6179 1.3255 3.6721 10 6 6.3059 0.8556 4.8331 11 6 7.7821 1.1189 4.6832 12 1 8.1574 1.5969 3.7904 13 6 8.6537 0.7486 5.6853 14 7 8.1967 0.1660 6.7722 15 14 10.4836 1.0743 5.4992 16 1 10.7134 2.5333 5.3448 17 1 11.1986 0.5861 6.7056 18 1 10.9935 0.3632 4.2994 19 6 4.0813 2.8781 -0.1220 20 6 4.0901 3.3929 -1.5710 21 6 5.4380 4.0596 -1.2410 22 6 5.6151 2.9851 -0.1552 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8898 28 1 1.6679 1.9594 0.8846 29 1 1.6855 1.9533 -0.8953 30 1 3.7698 -0.0943 1.3705 31 1 2.4890 1.5891 2.4950 32 1 3.8606 2.7050 2.2911 33 1 3.7860 1.6510 4.5704 34 1 3.9915 0.0582 3.8029 35 1 5.9316 1.3778 5.7135 36 1 6.1372 -0.2153 4.9467 37 1 8.8098 -0.0942 7.4774 38 1 3.6108 3.5641 0.5823 39 1 4.1656 2.6004 -2.3156 40 1 3.2920 4.1032 -1.7869 41 1 5.3384 5.0696 -0.8437 42 1 6.1699 3.9916 -2.0459 43 1 6.0462 3.3666 0.7704 44 1 6.1082 2.0809 -0.5118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000324936991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:52 Heat of formation + Delta-G solvation = -50.921116 kcal Electronic energy + Delta-G solvation = -19563.237859 eV Core-core repulsion = 16708.385309 eV Total energy + Delta-G solvation = -2854.852550 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.51452 -36.98542 -36.04906 -33.57372 -32.55284 -30.01896 -27.57445 -26.38126 -25.65992 -25.22838 -22.37804 -21.99727 -21.94085 -19.97806 -18.95396 -16.42690 -15.93281 -15.88870 -15.34351 -15.06777 -15.00164 -14.29224 -14.21708 -14.03146 -13.33312 -13.07978 -12.91165 -12.74064 -12.24247 -12.02226 -11.86059 -11.73960 -11.47916 -11.36331 -11.24694 -10.89886 -10.80014 -10.73644 -10.63782 -10.39064 -10.20222 -10.05588 -9.92635 -9.85150 -9.01689 -8.71477 -8.06329 -7.99632 -6.03523 -4.04138 3.37396 3.39438 3.43961 4.29224 4.41870 4.58612 4.76917 4.82995 4.94214 4.95869 4.97839 5.01560 5.18092 5.31680 5.32889 5.46179 5.50791 5.58112 5.68275 5.71017 5.73510 5.78583 5.86953 5.92214 5.93550 5.97362 5.98669 6.06704 6.11935 6.18042 6.26730 6.41038 6.42689 6.54950 6.70871 7.19462 7.34180 7.52575 7.68586 7.88453 8.25625 8.71783 9.10905 9.60426 11.08223 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020734 B = 0.004622 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.109953 B = 6056.730676 C = 7122.306706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.157 4.157 4 C 0.099 3.901 5 H 0.078 0.922 6 N -0.664 5.664 7 C 0.062 3.938 8 C 0.066 3.934 9 O -0.378 6.378 10 C 0.194 3.806 11 C -0.509 4.509 12 H 0.066 0.934 13 C 0.055 3.945 14 N -0.901 5.901 15 Si 0.907 3.093 16 H -0.275 1.275 17 H -0.287 1.287 18 H -0.275 1.275 19 C -0.101 4.101 20 C -0.134 4.134 21 C -0.149 4.149 22 C -0.115 4.115 23 H 0.052 0.948 24 H 0.052 0.948 25 H 0.051 0.949 26 H 0.061 0.939 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.336 0.664 31 H 0.033 0.967 32 H 0.079 0.921 33 H 0.036 0.964 34 H 0.032 0.968 35 H 0.001 0.999 36 H 0.002 0.998 37 H 0.263 0.737 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.059 0.941 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.734 3.171 -15.205 20.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.196 4.196 4 C -0.012 4.012 5 H 0.096 0.904 6 N -0.294 5.294 7 C -0.067 4.067 8 C -0.012 4.012 9 O -0.297 6.297 10 C 0.119 3.881 11 C -0.547 4.547 12 H 0.084 0.916 13 C -0.146 4.146 14 N -0.541 5.541 15 Si 0.734 3.266 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.200 1.200 19 C -0.119 4.119 20 C -0.172 4.172 21 C -0.186 4.186 22 C -0.152 4.152 23 H 0.071 0.929 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.080 0.920 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.155 0.845 31 H 0.051 0.949 32 H 0.097 0.903 33 H 0.054 0.946 34 H 0.050 0.950 35 H 0.018 0.982 36 H 0.020 0.980 37 H 0.073 0.927 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.078 0.922 41 H 0.093 0.907 42 H 0.081 0.919 43 H 0.090 0.910 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -12.948 3.490 -15.195 20.267 hybrid contribution -0.250 -0.321 0.416 0.582 sum -13.199 3.169 -14.780 20.067 Atomic orbital electron populations 1.21751 0.96006 1.01413 1.01596 1.21536 0.95806 0.97087 1.01959 1.22382 0.98110 0.96762 1.02352 1.21629 0.91129 0.95421 0.92972 0.90363 1.60456 1.63084 1.05322 1.00551 1.22018 0.95205 0.99221 0.90299 1.22215 0.85764 0.98020 0.95183 1.87954 1.15204 1.82874 1.43673 1.20156 0.91932 0.93326 0.82637 1.21033 0.90683 1.39093 1.03915 0.91579 1.24944 0.99472 0.95203 0.94948 1.69961 1.35324 1.41298 1.07511 0.86413 0.84025 0.78732 0.77402 1.20074 1.21267 1.20019 1.22524 0.97665 0.95419 0.96336 1.22951 0.97616 0.99932 0.96744 1.22911 0.97271 0.98830 0.99611 1.22684 0.95305 0.98389 0.98834 0.92910 0.92898 0.92938 0.92011 0.92122 0.91763 0.91787 0.84485 0.94894 0.90295 0.94617 0.95031 0.98163 0.98012 0.92742 0.89842 0.90431 0.92190 0.90721 0.91932 0.90979 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.16 5.72 -26.73 -0.15 -1.32 16 3 C -0.16 -1.55 4.48 -26.73 -0.12 -1.67 16 4 C 0.10 1.15 2.29 -67.71 -0.15 1.00 16 5 H 0.08 0.91 7.98 -51.93 -0.41 0.50 16 6 N -0.66 -9.57 6.11 -106.73 -0.65 -10.22 16 7 C 0.06 0.93 5.30 -3.83 -0.02 0.91 16 8 C 0.07 1.26 6.26 37.16 0.23 1.49 16 9 O -0.38 -9.34 10.27 -35.23 -0.36 -9.70 16 10 C 0.19 5.47 5.69 36.00 0.20 5.68 16 11 C -0.51 -15.35 9.43 -34.44 -0.32 -15.68 16 12 H 0.07 1.98 7.81 -52.48 -0.41 1.57 16 13 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 14 N -0.90 -27.51 13.29 55.43 0.74 -26.78 16 15 Si 0.91 22.31 29.54 -169.99 -5.02 17.29 16 16 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 17 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 19 C -0.10 -1.21 2.33 -89.81 -0.21 -1.41 16 20 C -0.13 -1.36 7.57 -25.83 -0.20 -1.56 16 21 C -0.15 -1.66 8.09 -25.82 -0.21 -1.87 16 22 C -0.11 -1.58 7.44 -25.91 -0.19 -1.77 16 23 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 24 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.60 6.84 -51.93 -0.36 0.24 16 28 H 0.06 0.68 6.26 -51.93 -0.33 0.35 16 29 H 0.06 0.59 8.08 -51.93 -0.42 0.17 16 30 H 0.34 4.59 7.33 -39.29 -0.29 4.30 16 31 H 0.03 0.43 6.51 -51.93 -0.34 0.09 16 32 H 0.08 1.25 6.27 -51.93 -0.33 0.92 16 33 H 0.04 0.65 8.14 -51.92 -0.42 0.23 16 34 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.00 0.02 8.14 -51.93 -0.42 -0.41 16 36 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 37 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 38 H 0.08 1.04 7.00 -51.93 -0.36 0.68 16 39 H 0.08 0.74 7.99 -51.93 -0.41 0.33 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 44 H 0.08 1.20 8.10 -51.93 -0.42 0.78 16 LS Contribution 346.68 15.07 5.22 5.22 Total: -1.00 -31.12 346.68 -9.23 -40.34 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.28 Total: -0.62 kcal Atomic # 6 Polarization: -14.67 SS G_CDS: -0.87 Total: -15.54 kcal Atomic # 7 Polarization: -37.08 SS G_CDS: 0.08 Total: -37.00 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: -0.36 Total: -9.70 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -31.12 -9.23 -40.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324936991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.577 kcal (2) G-P(sol) polarization free energy of solvation -31.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds