Wall clock time and date at job start Mon Mar 30 2020 06:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.47045 * 2 1 4 4 C 1.53003 * 109.47215 * 179.39490 * 3 2 1 5 5 H 1.08995 * 109.46899 * 54.53635 * 4 3 2 6 6 N 1.46901 * 109.46867 * 294.53789 * 4 3 2 7 7 C 1.46895 * 111.00376 * 299.49928 * 6 4 3 8 8 C 1.52999 * 109.47198 * 185.66459 * 7 6 4 9 9 O 1.42897 * 109.47203 * 64.99933 * 8 7 6 10 10 C 1.42901 * 113.99991 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.47236 * 180.02562 * 10 9 8 12 12 H 1.08006 * 120.00123 * 359.97438 * 11 10 9 13 13 C 1.37885 * 120.00298 * 180.02562 * 11 10 9 14 14 N 1.31516 * 119.99597 * 359.97438 * 13 11 10 15 15 Si 1.86796 * 120.00136 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.46840 * 60.00035 * 15 13 11 17 17 H 1.48495 * 109.47265 * 179.97438 * 15 13 11 18 18 H 1.48494 * 109.47203 * 299.99935 * 15 13 11 19 19 C 1.52999 * 109.47009 * 174.53923 * 4 3 2 20 20 C 1.53776 * 113.61176 * 279.13543 * 19 4 3 21 21 C 1.53958 * 87.01951 * 220.04842 * 20 19 4 22 22 C 1.53785 * 87.11056 * 25.36822 * 21 20 19 23 23 H 1.09000 * 109.46705 * 179.97438 * 1 2 3 24 24 H 1.08993 * 109.46893 * 299.99702 * 1 2 3 25 25 H 1.09000 * 109.47006 * 59.99948 * 1 2 3 26 26 H 1.09001 * 109.47181 * 240.00890 * 2 1 3 27 27 H 1.08990 * 109.47115 * 120.00611 * 2 1 3 28 28 H 1.09001 * 109.46508 * 59.39943 * 3 2 1 29 29 H 1.09000 * 109.47502 * 299.40138 * 3 2 1 30 30 H 1.00903 * 111.00324 * 63.45333 * 6 4 3 31 31 H 1.08998 * 109.46948 * 65.66298 * 7 6 4 32 32 H 1.09002 * 109.47252 * 305.66436 * 7 6 4 33 33 H 1.09008 * 109.47266 * 184.99721 * 8 7 6 34 34 H 1.08994 * 109.47067 * 304.99541 * 8 7 6 35 35 H 1.08995 * 109.47244 * 300.00296 * 10 9 8 36 36 H 1.09004 * 109.46889 * 60.00491 * 10 9 8 37 37 H 0.96998 * 119.99737 * 180.02562 * 14 13 11 38 38 H 1.08997 * 112.84857 * 50.33492 * 19 4 3 39 39 H 1.09000 * 113.61879 * 334.56746 * 20 19 4 40 40 H 1.08998 * 113.61596 * 105.47770 * 20 19 4 41 41 H 1.08991 * 113.54190 * 270.81451 * 21 20 19 42 42 H 1.09004 * 113.74190 * 139.94429 * 21 20 19 43 43 H 1.09003 * 113.60999 * 220.09199 * 22 21 20 44 44 H 1.08990 * 113.62106 * 89.18386 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0152 5 1 3.9416 0.8435 -0.8160 6 7 4.0470 0.8719 1.2820 7 6 3.5744 1.6620 2.4266 8 6 4.2038 1.1235 3.7129 9 8 5.6179 1.3255 3.6721 10 6 6.3059 0.8556 4.8331 11 6 7.7821 1.1189 4.6832 12 1 8.1574 1.5969 3.7904 13 6 8.6537 0.7486 5.6853 14 7 8.1967 0.1660 6.7722 15 14 10.4836 1.0743 5.4992 16 1 10.7134 2.5333 5.3448 17 1 11.1986 0.5861 6.7056 18 1 10.9935 0.3632 4.2994 19 6 4.0813 2.8781 -0.1220 20 6 4.0901 3.3929 -1.5710 21 6 5.4380 4.0596 -1.2410 22 6 5.6151 2.9851 -0.1552 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.8934 -0.5137 -0.8901 27 1 1.8933 -0.5139 0.8898 28 1 1.6679 1.9594 0.8846 29 1 1.6855 1.9533 -0.8953 30 1 3.7698 -0.0943 1.3705 31 1 2.4890 1.5891 2.4950 32 1 3.8606 2.7050 2.2911 33 1 3.7860 1.6510 4.5704 34 1 3.9915 0.0582 3.8029 35 1 5.9316 1.3778 5.7135 36 1 6.1372 -0.2153 4.9467 37 1 8.8098 -0.0942 7.4774 38 1 3.6108 3.5641 0.5823 39 1 4.1656 2.6004 -2.3156 40 1 3.2920 4.1032 -1.7869 41 1 5.3384 5.0696 -0.8437 42 1 6.1699 3.9916 -2.0459 43 1 6.0462 3.3666 0.7704 44 1 6.1082 2.0809 -0.5118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000324936991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:52 Heat of formation + Delta-G solvation = -70.059342 kcal Electronic energy + Delta-G solvation = -19564.067755 eV Core-core repulsion = 16708.385309 eV Total energy + Delta-G solvation = -2855.682446 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.50626 -38.60037 -37.27753 -35.03201 -34.32863 -31.26858 -29.33457 -27.93460 -26.54790 -26.16626 -24.49000 -23.46911 -22.74175 -20.92139 -19.96915 -18.61353 -17.54412 -17.10154 -16.67747 -16.38953 -16.21375 -15.95010 -15.50948 -15.12343 -14.67342 -14.49517 -14.01489 -13.83391 -13.58706 -13.22370 -13.17307 -12.92819 -12.84223 -12.68535 -12.57914 -12.34438 -12.19505 -12.12485 -11.81347 -11.72818 -11.47567 -11.25595 -11.21392 -11.02644 -10.83500 -10.79906 -10.15915 -9.09465 -8.30513 -6.42314 1.39605 1.44802 1.53109 2.36031 3.02979 3.21922 3.29771 3.71015 3.85996 3.96471 4.08182 4.10245 4.17283 4.25707 4.30966 4.35633 4.52129 4.57663 4.64213 4.67304 4.78422 4.81188 4.86719 4.91511 4.95992 4.98690 5.04152 5.06587 5.11950 5.15027 5.20860 5.26017 5.32053 5.35210 5.45864 5.53142 5.56921 5.72227 5.99441 6.24652 6.55868 6.63139 6.89298 7.29946 8.81771 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.020734 B = 0.004622 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.109953 B = 6056.730676 C = 7122.306706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.125 4.125 3 C -0.147 4.147 4 C 0.103 3.897 5 H 0.081 0.919 6 N -0.685 5.685 7 C 0.076 3.924 8 C 0.056 3.944 9 O -0.392 6.392 10 C 0.209 3.791 11 C -0.545 4.545 12 H 0.059 0.941 13 C 0.006 3.994 14 N -0.932 5.932 15 Si 0.982 3.018 16 H -0.266 1.266 17 H -0.274 1.274 18 H -0.266 1.266 19 C -0.101 4.101 20 C -0.118 4.118 21 C -0.143 4.143 22 C -0.127 4.127 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.060 0.940 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.077 0.923 30 H 0.340 0.660 31 H 0.064 0.936 32 H 0.070 0.930 33 H 0.041 0.959 34 H 0.036 0.964 35 H -0.019 1.019 36 H -0.019 1.019 37 H 0.270 0.730 38 H 0.078 0.922 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.070 0.930 43 H 0.036 0.964 44 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.135 3.612 -16.755 22.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.163 4.163 3 C -0.186 4.186 4 C -0.007 4.007 5 H 0.099 0.901 6 N -0.317 5.317 7 C -0.053 4.053 8 C -0.022 4.022 9 O -0.311 6.311 10 C 0.134 3.866 11 C -0.582 4.582 12 H 0.077 0.923 13 C -0.192 4.192 14 N -0.571 5.571 15 Si 0.805 3.195 16 H -0.190 1.190 17 H -0.198 1.198 18 H -0.191 1.191 19 C -0.120 4.120 20 C -0.156 4.156 21 C -0.180 4.180 22 C -0.165 4.165 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.096 0.904 30 H 0.159 0.841 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.060 0.940 34 H 0.054 0.946 35 H -0.001 1.001 36 H -0.001 1.001 37 H 0.079 0.921 38 H 0.097 0.903 39 H 0.106 0.894 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.055 0.945 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.380 3.933 -16.759 21.803 hybrid contribution -0.186 -0.485 0.910 1.048 sum -13.566 3.448 -15.849 21.145 Atomic orbital electron populations 1.21734 0.95128 1.01835 1.01888 1.21526 0.96536 0.96502 1.01746 1.22268 0.96237 0.97322 1.02749 1.21640 0.92572 0.94958 0.91527 0.90075 1.60402 1.64187 1.05666 1.01417 1.21843 0.96327 0.98406 0.88695 1.22589 0.82879 0.98783 0.97908 1.87920 1.18413 1.82745 1.42070 1.19772 0.91946 0.91722 0.83169 1.21344 0.92031 1.40471 1.04395 0.92281 1.25952 1.04918 0.94176 0.94133 1.70068 1.37482 1.41375 1.08205 0.85253 0.77147 0.79096 0.78031 1.19049 1.19850 1.19082 1.22535 0.95862 0.95705 0.97863 1.22874 0.97235 1.00172 0.95344 1.22895 0.98318 0.98164 0.98639 1.22676 0.96707 0.98898 0.98243 0.92491 0.93120 0.92122 0.91570 0.93070 0.92238 0.90426 0.84108 0.91874 0.91148 0.94042 0.94600 1.00096 1.00085 0.92091 0.90323 0.89390 0.90413 0.90348 0.91113 0.94528 0.91233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.13 -2.06 5.72 30.60 0.18 -1.88 16 3 C -0.15 -2.56 4.48 30.60 0.14 -2.42 16 4 C 0.10 2.26 2.29 44.92 0.10 2.37 16 5 H 0.08 1.76 7.98 -2.39 -0.02 1.74 16 6 N -0.69 -19.58 6.11 -491.58 -3.00 -22.58 16 7 C 0.08 2.27 5.30 86.30 0.46 2.73 16 8 C 0.06 2.16 6.26 71.98 0.45 2.61 16 9 O -0.39 -20.07 10.27 -148.98 -1.53 -21.60 16 10 C 0.21 12.28 5.69 71.23 0.41 12.68 16 11 C -0.54 -33.71 9.43 25.60 0.24 -33.47 16 12 H 0.06 3.64 7.81 -2.91 -0.02 3.62 16 13 C 0.01 0.38 5.46 84.66 0.46 0.84 16 14 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 15 Si 0.98 45.67 29.54 68.60 2.03 47.69 16 16 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 C -0.10 -2.31 2.33 -10.27 -0.02 -2.34 16 20 C -0.12 -2.12 7.57 31.18 0.24 -1.88 16 21 C -0.14 -3.02 8.09 31.18 0.25 -2.77 16 22 C -0.13 -3.57 7.44 31.12 0.23 -3.34 16 23 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 24 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 0.94 6.84 -2.39 -0.02 0.92 16 28 H 0.06 1.11 6.26 -2.39 -0.01 1.09 16 29 H 0.08 1.18 8.08 -2.39 -0.02 1.16 16 30 H 0.34 9.16 7.33 -89.69 -0.66 8.50 16 31 H 0.06 1.52 6.51 -2.39 -0.02 1.51 16 32 H 0.07 2.23 6.27 -2.39 -0.01 2.21 16 33 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 34 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 35 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 36 H -0.02 -1.14 8.14 -2.39 -0.02 -1.16 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.66 16 38 H 0.08 1.89 7.00 -2.39 -0.02 1.87 16 39 H 0.09 1.42 7.99 -2.39 -0.02 1.40 16 40 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 44 H 0.07 2.09 8.10 -2.39 -0.02 2.07 16 Total: -1.00 -67.77 346.68 1.90 -65.87 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.28 Total: 16.06 kcal Atomic # 6 Polarization: -32.12 SS G_CDS: 3.84 Total: -28.28 kcal Atomic # 7 Polarization: -77.02 SS G_CDS: -2.72 Total: -79.74 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -1.53 Total: -21.60 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.69 kcal Total: -67.77 1.90 -65.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000324936991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.189 kcal (2) G-P(sol) polarization free energy of solvation -67.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.870 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds