Wall clock time and date at job start Mon Mar 30 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99810 * 2 1 4 4 C 1.53005 * 109.47321 * 59.99547 * 3 2 1 5 5 C 1.53001 * 109.47076 * 299.99452 * 3 2 1 6 6 C 1.52997 * 109.47442 * 179.97438 * 3 2 1 7 7 C 1.52999 * 109.47101 * 64.99705 * 6 3 2 8 8 N 1.46895 * 109.47332 * 184.15390 * 7 6 3 9 9 C 1.46892 * 111.00328 * 76.22509 * 8 7 6 10 10 C 1.50700 * 109.47348 * 190.00054 * 9 8 7 11 11 H 1.07999 * 119.99852 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00291 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99583 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00117 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47398 * 59.99682 * 14 12 10 16 16 H 1.48503 * 109.47078 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46908 * 299.99818 * 14 12 10 18 18 C 1.46906 * 111.00072 * 200.18330 * 8 7 6 19 19 C 1.52996 * 109.47407 * 76.59269 * 18 8 7 20 20 C 1.52994 * 117.50195 * 244.75845 * 19 18 8 21 21 C 1.52994 * 60.00126 * 252.50983 * 20 19 18 22 22 H 1.09000 * 109.46795 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47663 * 300.00206 * 1 2 3 24 24 H 1.09002 * 109.46989 * 60.00580 * 1 2 3 25 25 H 1.08997 * 109.47199 * 180.02562 * 4 3 2 26 26 H 1.08999 * 109.46631 * 300.00137 * 4 3 2 27 27 H 1.08999 * 109.47166 * 59.99997 * 4 3 2 28 28 H 1.08994 * 109.47306 * 300.00159 * 5 3 2 29 29 H 1.09007 * 109.46919 * 60.00477 * 5 3 2 30 30 H 1.09005 * 109.47244 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.47155 * 304.99982 * 6 3 2 32 32 H 1.08996 * 109.47457 * 185.00167 * 6 3 2 33 33 H 1.09006 * 109.46903 * 64.15200 * 7 6 3 34 34 H 1.09008 * 109.47041 * 304.15645 * 7 6 3 35 35 H 1.09004 * 109.47192 * 310.00147 * 9 8 7 36 36 H 1.09002 * 109.47728 * 70.00037 * 9 8 7 37 37 H 0.96998 * 119.99396 * 180.02562 * 13 12 10 38 38 H 1.09004 * 109.47254 * 196.60139 * 18 8 7 39 39 H 1.09005 * 109.46488 * 316.59247 * 18 8 7 40 40 H 1.09004 * 115.54695 * 30.47450 * 19 18 8 41 41 H 1.09003 * 117.49889 * 0.02562 * 20 19 18 42 42 H 1.08998 * 117.49748 * 145.01862 * 20 19 18 43 43 H 1.08994 * 117.50480 * 252.50919 * 21 20 19 44 44 H 1.09005 * 117.49545 * 107.48687 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5586 2.0648 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1848 0.0006 7 6 3.9963 0.5366 -1.3064 8 7 5.4500 0.3298 -1.2645 9 6 5.7940 -0.8202 -0.4179 10 6 7.2847 -0.8549 -0.1991 11 1 7.9135 -0.0981 -0.6442 12 6 7.8456 -1.8524 0.5701 13 7 7.0797 -2.7737 1.1124 14 14 9.6932 -1.8949 0.8417 15 1 10.1243 -0.6410 1.5102 16 1 10.0410 -3.0576 1.6975 17 1 10.3832 -2.0204 -0.4673 18 6 5.9982 0.1699 -2.6180 19 6 6.0815 1.5372 -3.2994 20 6 5.2028 1.7678 -4.5304 21 6 6.7145 1.5956 -4.6911 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 2.0016 3.0607 1.2490 26 1 0.4720 2.1508 1.2491 27 1 1.8802 1.5240 2.1392 28 1 1.8805 1.5238 -2.1392 29 1 0.4722 2.1508 -1.2493 30 1 2.0018 3.0607 -1.2491 31 1 3.8508 0.5687 0.8427 32 1 3.9784 2.1767 0.0902 33 1 3.7459 1.1885 -2.1433 34 1 3.4961 -0.4239 -1.4317 35 1 5.2879 -0.7283 0.5431 36 1 5.4774 -1.7405 -0.9087 37 1 7.4744 -3.4752 1.6538 38 1 6.9950 -0.2671 -2.5570 39 1 5.3488 -0.4861 -3.1978 40 1 6.2492 2.3844 -2.6344 41 1 4.5649 0.9455 -4.8546 42 1 4.7918 2.7669 -4.6753 43 1 7.2981 2.4813 -4.9418 44 1 7.0715 0.6598 -5.1212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336666832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:45 Heat of formation + Delta-G solvation = -29.025117 kcal Electronic energy + Delta-G solvation = -20046.965022 eV Core-core repulsion = 17193.061954 eV Total energy + Delta-G solvation = -2853.903068 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.06431 -37.64729 -35.53234 -33.36614 -32.26664 -29.09068 -27.49414 -27.21088 -26.70141 -24.73033 -22.65419 -21.99946 -20.54995 -19.59621 -19.40089 -16.48803 -16.12460 -15.59812 -15.05915 -15.05525 -14.74153 -14.13016 -13.88393 -13.68248 -13.38161 -12.86605 -12.67045 -12.42057 -12.10561 -11.92448 -11.64647 -11.61159 -11.42997 -11.30285 -11.16928 -10.97171 -10.80712 -10.60970 -10.52422 -10.22069 -10.12764 -9.96834 -9.50704 -9.39953 -9.32907 -9.03211 -8.35058 -7.11844 -5.94617 -3.95667 3.37907 3.41770 3.44880 3.98852 4.18408 4.48371 4.76340 4.99020 5.04226 5.16044 5.30638 5.32235 5.38931 5.40542 5.41923 5.57033 5.60297 5.66904 5.77513 5.81730 5.85675 5.88094 5.96840 6.03117 6.09752 6.17441 6.19132 6.29906 6.37602 6.40167 6.46903 6.58007 6.70661 6.84395 6.90801 7.43225 7.47087 7.50218 7.90131 8.22421 8.34473 8.66957 9.12653 9.67931 11.16001 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.006644 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.612038 B = 4213.103883 C = 5687.575284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.372 6.372 3 C 0.110 3.890 4 C -0.176 4.176 5 C -0.177 4.177 6 C -0.097 4.097 7 C 0.060 3.940 8 N -0.537 5.537 9 C 0.194 3.806 10 C -0.507 4.507 11 H 0.063 0.937 12 C 0.055 3.945 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.277 1.277 16 H -0.289 1.289 17 H -0.278 1.278 18 C 0.091 3.909 19 C -0.129 4.129 20 C -0.192 4.192 21 C -0.185 4.185 22 H 0.080 0.920 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.065 0.935 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.034 0.966 36 H -0.012 1.012 37 H 0.261 0.739 38 H 0.089 0.911 39 H 0.019 0.981 40 H 0.108 0.892 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.088 0.912 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.911 9.632 -5.822 15.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.291 6.291 3 C 0.071 3.929 4 C -0.233 4.233 5 C -0.234 4.234 6 C -0.134 4.134 7 C -0.068 4.068 8 N -0.261 5.261 9 C 0.069 3.931 10 C -0.546 4.546 11 H 0.081 0.919 12 C -0.146 4.146 13 N -0.537 5.537 14 Si 0.724 3.276 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.203 1.203 18 C -0.037 4.037 19 C -0.148 4.148 20 C -0.229 4.229 21 C -0.223 4.223 22 H 0.098 0.902 23 H 0.058 0.942 24 H 0.057 0.943 25 H 0.084 0.916 26 H 0.073 0.927 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.052 0.948 36 H 0.006 0.994 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.037 0.963 40 H 0.126 0.874 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.106 0.894 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -10.573 9.705 -5.486 15.365 hybrid contribution 0.321 -0.595 -0.142 0.690 sum -10.253 9.111 -5.628 14.826 Atomic orbital electron populations 1.22731 0.82592 1.02204 0.99606 1.88087 1.18554 1.27544 1.94879 1.21590 0.94810 0.82919 0.93595 1.22399 1.01014 1.01034 0.98875 1.22455 1.00813 1.01070 0.99076 1.21533 0.89824 1.02061 1.00015 1.22016 0.89694 0.98737 0.96389 1.62006 1.09003 1.44772 1.10271 1.19730 0.96378 0.85137 0.91892 1.21170 0.92134 1.10579 1.30688 0.91931 1.24987 0.98059 0.95631 0.95927 1.69967 1.35058 1.14745 1.33967 0.86604 0.85606 0.77361 0.78073 1.20224 1.21454 1.20350 1.21557 1.00966 0.92177 0.89008 1.22459 1.02286 1.00698 0.89322 1.23000 0.93368 1.01917 1.04613 1.22889 0.95257 1.02632 1.01501 0.90153 0.94210 0.94250 0.91554 0.92714 0.91608 0.91368 0.92928 0.91568 0.90479 0.90507 0.92199 0.95107 0.94848 0.99392 0.92981 0.89289 0.96292 0.87437 0.89479 0.89637 0.89374 0.89155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.21 101.05 1.03 1.33 16 2 O -0.37 -5.97 9.81 -35.23 -0.35 -6.32 16 3 C 0.11 1.58 0.82 -90.62 -0.07 1.51 16 4 C -0.18 -2.14 8.25 37.16 0.31 -1.84 16 5 C -0.18 -2.14 7.76 37.16 0.29 -1.85 16 6 C -0.10 -1.67 4.68 -26.73 -0.13 -1.79 16 7 C 0.06 1.13 4.12 -3.83 -0.02 1.11 16 8 N -0.54 -11.72 4.35 -236.07 -1.03 -12.75 16 9 C 0.19 5.16 4.54 -4.98 -0.02 5.13 16 10 C -0.51 -14.40 8.22 -34.44 -0.28 -14.68 16 11 H 0.06 1.75 7.32 -52.49 -0.38 1.37 16 12 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 13 N -0.90 -27.17 13.29 55.43 0.74 -26.43 16 14 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 16 15 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 18 C 0.09 1.82 5.06 -3.82 -0.02 1.80 16 19 C -0.13 -2.10 5.22 -90.63 -0.47 -2.58 16 20 C -0.19 -2.62 10.04 -26.74 -0.27 -2.89 16 21 C -0.19 -2.58 10.25 -26.74 -0.27 -2.85 16 22 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 23 H 0.04 0.42 6.42 -51.93 -0.33 0.08 16 24 H 0.04 0.41 6.42 -51.93 -0.33 0.08 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.05 0.58 6.54 -51.93 -0.34 0.24 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.07 0.88 6.44 -51.93 -0.33 0.55 16 29 H 0.05 0.55 6.54 -51.93 -0.34 0.21 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.08 1.55 6.71 -51.93 -0.35 1.21 16 32 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.06 1.01 5.67 -51.93 -0.29 0.71 16 34 H 0.03 0.64 7.57 -51.92 -0.39 0.25 16 35 H 0.03 0.95 6.61 -51.93 -0.34 0.61 16 36 H -0.01 -0.34 8.12 -51.93 -0.42 -0.76 16 37 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 38 H 0.09 1.97 6.58 -51.93 -0.34 1.63 16 39 H 0.02 0.37 7.72 -51.93 -0.40 -0.03 16 40 H 0.11 1.81 8.14 -51.93 -0.42 1.39 16 41 H 0.09 1.18 8.03 -51.93 -0.42 0.77 16 42 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 LS Contribution 341.22 15.07 5.14 5.14 Total: -1.00 -30.34 341.22 -8.51 -38.84 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -7.96 Total: 0.69 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: -0.03 Total: -16.09 kcal Atomic # 7 Polarization: -38.89 SS G_CDS: -0.29 Total: -39.18 kcal Atomic # 8 Polarization: -5.97 SS G_CDS: -0.35 Total: -6.32 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.34 -8.51 -38.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336666832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.817 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds