Wall clock time and date at job start Mon Mar 30 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42901 * 113.99810 * 2 1 4 4 C 1.53005 * 109.47321 * 59.99547 * 3 2 1 5 5 C 1.53001 * 109.47076 * 299.99452 * 3 2 1 6 6 C 1.52997 * 109.47442 * 179.97438 * 3 2 1 7 7 C 1.52999 * 109.47101 * 64.99705 * 6 3 2 8 8 N 1.46895 * 109.47332 * 184.15390 * 7 6 3 9 9 C 1.46892 * 111.00328 * 76.22509 * 8 7 6 10 10 C 1.50700 * 109.47348 * 190.00054 * 9 8 7 11 11 H 1.07999 * 119.99852 * 0.02562 * 10 9 8 12 12 C 1.37881 * 120.00291 * 179.97438 * 10 9 8 13 13 N 1.31519 * 119.99583 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00117 * 180.02562 * 12 10 9 15 15 H 1.48493 * 109.47398 * 59.99682 * 14 12 10 16 16 H 1.48503 * 109.47078 * 180.02562 * 14 12 10 17 17 H 1.48501 * 109.46908 * 299.99818 * 14 12 10 18 18 C 1.46906 * 111.00072 * 200.18330 * 8 7 6 19 19 C 1.52996 * 109.47407 * 76.59269 * 18 8 7 20 20 C 1.52994 * 117.50195 * 244.75845 * 19 18 8 21 21 C 1.52994 * 60.00126 * 252.50983 * 20 19 18 22 22 H 1.09000 * 109.46795 * 179.97438 * 1 2 3 23 23 H 1.08993 * 109.47663 * 300.00206 * 1 2 3 24 24 H 1.09002 * 109.46989 * 60.00580 * 1 2 3 25 25 H 1.08997 * 109.47199 * 180.02562 * 4 3 2 26 26 H 1.08999 * 109.46631 * 300.00137 * 4 3 2 27 27 H 1.08999 * 109.47166 * 59.99997 * 4 3 2 28 28 H 1.08994 * 109.47306 * 300.00159 * 5 3 2 29 29 H 1.09007 * 109.46919 * 60.00477 * 5 3 2 30 30 H 1.09005 * 109.47244 * 179.97438 * 5 3 2 31 31 H 1.09001 * 109.47155 * 304.99982 * 6 3 2 32 32 H 1.08996 * 109.47457 * 185.00167 * 6 3 2 33 33 H 1.09006 * 109.46903 * 64.15200 * 7 6 3 34 34 H 1.09008 * 109.47041 * 304.15645 * 7 6 3 35 35 H 1.09004 * 109.47192 * 310.00147 * 9 8 7 36 36 H 1.09002 * 109.47728 * 70.00037 * 9 8 7 37 37 H 0.96998 * 119.99396 * 180.02562 * 13 12 10 38 38 H 1.09004 * 109.47254 * 196.60139 * 18 8 7 39 39 H 1.09005 * 109.46488 * 316.59247 * 18 8 7 40 40 H 1.09004 * 115.54695 * 30.47450 * 19 18 8 41 41 H 1.09003 * 117.49889 * 0.02562 * 20 19 18 42 42 H 1.08998 * 117.49748 * 145.01862 * 20 19 18 43 43 H 1.08994 * 117.50480 * 252.50919 * 21 20 19 44 44 H 1.09005 * 117.49545 * 107.48687 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 1.5586 2.0648 1.2492 5 6 1.5588 2.0647 -1.2493 6 6 3.5354 1.1848 0.0006 7 6 3.9963 0.5366 -1.3064 8 7 5.4500 0.3298 -1.2645 9 6 5.7940 -0.8202 -0.4179 10 6 7.2847 -0.8549 -0.1991 11 1 7.9135 -0.0981 -0.6442 12 6 7.8456 -1.8524 0.5701 13 7 7.0797 -2.7737 1.1124 14 14 9.6932 -1.8949 0.8417 15 1 10.1243 -0.6410 1.5102 16 1 10.0410 -3.0576 1.6975 17 1 10.3832 -2.0204 -0.4673 18 6 5.9982 0.1699 -2.6180 19 6 6.0815 1.5372 -3.2994 20 6 5.2028 1.7678 -4.5304 21 6 6.7145 1.5956 -4.6911 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5138 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 2.0016 3.0607 1.2490 26 1 0.4720 2.1508 1.2491 27 1 1.8802 1.5240 2.1392 28 1 1.8805 1.5238 -2.1392 29 1 0.4722 2.1508 -1.2493 30 1 2.0018 3.0607 -1.2491 31 1 3.8508 0.5687 0.8427 32 1 3.9784 2.1767 0.0902 33 1 3.7459 1.1885 -2.1433 34 1 3.4961 -0.4239 -1.4317 35 1 5.2879 -0.7283 0.5431 36 1 5.4774 -1.7405 -0.9087 37 1 7.4744 -3.4752 1.6538 38 1 6.9950 -0.2671 -2.5570 39 1 5.3488 -0.4861 -3.1978 40 1 6.2492 2.3844 -2.6344 41 1 4.5649 0.9455 -4.8546 42 1 4.7918 2.7669 -4.6753 43 1 7.2981 2.4813 -4.9418 44 1 7.0715 0.6598 -5.1212 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336666832.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:15:44 Heat of formation + Delta-G solvation = -47.897809 kcal Electronic energy + Delta-G solvation = -20047.783404 eV Core-core repulsion = 17193.061954 eV Total energy + Delta-G solvation = -2854.721450 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.27545 -39.06496 -37.01645 -34.95980 -34.11005 -30.51730 -29.30404 -28.34656 -27.77299 -26.39873 -24.42872 -23.12122 -22.12858 -21.05628 -20.64654 -18.59531 -17.38007 -16.94166 -16.74454 -16.21769 -16.08521 -15.68610 -15.47796 -15.09323 -14.63434 -14.28134 -14.16945 -13.82326 -13.48492 -13.40204 -13.19375 -12.86095 -12.78280 -12.61968 -12.57993 -12.36453 -12.27585 -12.19629 -12.13086 -11.95455 -11.53007 -11.32527 -11.21112 -10.98832 -10.66105 -10.55939 -10.41656 -8.99049 -8.18466 -6.29037 1.40259 1.44237 1.52121 2.40996 2.92816 2.98463 3.12677 3.26644 3.87335 3.91834 4.02280 4.13268 4.15009 4.25020 4.34230 4.48356 4.50293 4.54237 4.60301 4.68895 4.71738 4.80202 4.82185 4.85880 4.89688 4.90679 4.95216 5.06445 5.10756 5.12163 5.20925 5.26681 5.29955 5.32631 5.35517 5.44436 5.48105 5.67547 6.09463 6.38671 6.46538 6.69527 6.88205 7.40434 8.92648 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014530 B = 0.006644 C = 0.004922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.612038 B = 4213.103883 C = 5687.575284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.412 6.412 3 C 0.108 3.892 4 C -0.172 4.172 5 C -0.171 4.171 6 C -0.093 4.093 7 C 0.069 3.931 8 N -0.538 5.538 9 C 0.213 3.787 10 C -0.522 4.522 11 H 0.064 0.936 12 C 0.000 4.000 13 N -0.936 5.936 14 Si 0.970 3.030 15 H -0.267 1.267 16 H -0.283 1.283 17 H -0.267 1.267 18 C 0.095 3.905 19 C -0.151 4.151 20 C -0.171 4.171 21 C -0.173 4.173 22 H 0.084 0.916 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.035 0.965 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.004 0.996 35 H 0.004 0.996 36 H -0.051 1.051 37 H 0.264 0.736 38 H 0.059 0.941 39 H 0.015 0.985 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.110 0.890 44 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.095 11.973 -7.127 17.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.332 6.332 3 C 0.069 3.931 4 C -0.229 4.229 5 C -0.228 4.228 6 C -0.131 4.131 7 C -0.059 4.059 8 N -0.261 5.261 9 C 0.087 3.913 10 C -0.560 4.560 11 H 0.082 0.918 12 C -0.198 4.198 13 N -0.577 5.577 14 Si 0.794 3.206 15 H -0.192 1.192 16 H -0.209 1.209 17 H -0.192 1.192 18 C -0.033 4.033 19 C -0.170 4.170 20 C -0.207 4.207 21 C -0.211 4.211 22 H 0.102 0.898 23 H 0.072 0.928 24 H 0.075 0.925 25 H 0.100 0.900 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.076 0.924 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.053 0.947 32 H 0.107 0.893 33 H 0.106 0.894 34 H 0.022 0.978 35 H 0.022 0.978 36 H -0.033 1.033 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.033 0.967 40 H 0.123 0.877 41 H 0.106 0.894 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.772 12.067 -6.810 17.550 hybrid contribution 0.312 -1.356 0.240 1.412 sum -10.459 10.711 -6.569 16.349 Atomic orbital electron populations 1.22931 0.80431 1.03114 1.01127 1.88035 1.21075 1.28858 1.95248 1.21607 0.92393 0.83035 0.96056 1.22361 1.02517 1.01112 0.96892 1.22395 1.02333 1.01135 0.96921 1.21491 0.92911 1.01395 0.97268 1.22035 0.87361 0.98060 0.98470 1.62012 1.11192 1.41865 1.11054 1.19320 0.95615 0.85310 0.91102 1.21454 0.92884 1.10841 1.30854 0.91775 1.25961 1.03524 0.94983 0.95351 1.70117 1.37461 1.15466 1.34617 0.85426 0.78962 0.77747 0.78428 1.19153 1.20873 1.19161 1.21503 0.98934 0.94768 0.88131 1.22176 1.06472 0.97904 0.90440 1.23081 0.93267 1.03314 1.01075 1.23001 0.96006 1.03563 0.98523 0.89772 0.92753 0.92467 0.89986 0.90470 0.93379 0.92426 0.90749 0.89956 0.94656 0.89313 0.89367 0.97789 0.97818 1.03313 0.92775 0.92278 0.96713 0.87738 0.89447 0.87082 0.87181 0.89338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.44 10.21 113.37 1.16 1.60 16 2 O -0.41 -13.42 9.81 -148.98 -1.46 -14.88 16 3 C 0.11 3.04 0.82 -10.79 -0.01 3.03 16 4 C -0.17 -3.94 8.25 71.98 0.59 -3.35 16 5 C -0.17 -3.68 7.76 71.98 0.56 -3.12 16 6 C -0.09 -3.30 4.68 30.59 0.14 -3.16 16 7 C 0.07 2.67 4.12 86.30 0.36 3.02 16 8 N -0.54 -24.55 4.35 -900.78 -3.92 -28.46 16 9 C 0.21 12.12 4.54 85.56 0.39 12.51 16 10 C -0.52 -30.84 8.22 25.60 0.21 -30.63 16 11 H 0.06 3.69 7.32 -2.91 -0.02 3.67 16 12 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 13 N -0.94 -58.80 13.29 21.45 0.28 -58.52 16 14 Si 0.97 45.63 29.54 68.60 2.03 47.65 16 15 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 C 0.09 3.89 5.06 86.30 0.44 4.32 16 19 C -0.15 -4.75 5.22 -10.80 -0.06 -4.81 16 20 C -0.17 -4.13 10.04 30.59 0.31 -3.83 16 21 C -0.17 -4.39 10.25 30.59 0.31 -4.07 16 22 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.05 1.04 6.42 -2.39 -0.02 1.02 16 24 H 0.06 1.06 6.42 -2.39 -0.02 1.04 16 25 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.08 1.42 6.54 -2.39 -0.02 1.40 16 27 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.06 1.36 6.44 -2.39 -0.02 1.35 16 29 H 0.07 1.29 6.54 -2.38 -0.02 1.28 16 30 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 31 H 0.03 1.53 6.71 -2.39 -0.02 1.51 16 32 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 33 H 0.09 2.91 5.67 -2.38 -0.01 2.90 16 34 H 0.00 0.17 7.57 -2.38 -0.02 0.15 16 35 H 0.00 0.23 6.61 -2.39 -0.02 0.22 16 36 H -0.05 -3.21 8.12 -2.39 -0.02 -3.23 16 37 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 38 H 0.06 2.73 6.58 -2.39 -0.02 2.72 16 39 H 0.01 0.60 7.72 -2.38 -0.02 0.58 16 40 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 41 H 0.09 2.14 8.03 -2.39 -0.02 2.12 16 42 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.09 2.28 8.14 -2.38 -0.02 2.26 16 Total: -1.00 -69.38 341.22 2.74 -66.64 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: 0.94 Total: 15.61 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 4.86 Total: -28.04 kcal Atomic # 7 Polarization: -83.35 SS G_CDS: -3.63 Total: -86.98 kcal Atomic # 8 Polarization: -13.42 SS G_CDS: -1.46 Total: -14.88 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -69.38 2.74 -66.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336666832.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.747 kcal (2) G-P(sol) polarization free energy of solvation -69.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds