Wall clock time and date at job start Mon Mar 30 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 C 1.52995 * 109.47612 * 120.00476 * 2 1 3 5 5 H 1.09004 * 109.46622 * 180.16393 * 4 2 1 6 6 C 1.53043 * 109.45288 * 300.13875 * 4 2 1 7 7 C 1.53110 * 109.28066 * 179.18931 * 6 4 2 8 8 C 1.53122 * 109.16200 * 302.34634 * 7 6 4 9 9 C 1.53032 * 109.28051 * 57.65341 * 8 7 6 10 10 N 1.46851 * 109.46391 * 60.18203 * 4 2 1 11 11 C 1.46903 * 110.99634 * 54.16030 * 10 4 2 12 12 C 1.53002 * 109.46600 * 175.96828 * 11 10 4 13 13 O 1.42896 * 109.47291 * 62.44653 * 12 11 10 14 14 C 1.42901 * 114.00294 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47558 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99652 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99971 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99618 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00194 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47118 * 90.00071 * 19 17 15 21 21 H 1.48503 * 109.47232 * 210.00060 * 19 17 15 22 22 H 1.48501 * 109.47162 * 330.00092 * 19 17 15 23 23 H 1.08999 * 109.47213 * 299.99549 * 1 2 3 24 24 H 1.09003 * 109.47707 * 59.99771 * 1 2 3 25 25 H 1.09009 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.09011 * 109.46906 * 240.00250 * 2 1 3 27 27 H 1.09003 * 109.46847 * 54.71799 * 3 2 1 28 28 H 1.08996 * 109.47574 * 174.71856 * 3 2 1 29 29 H 1.09003 * 109.47258 * 294.72225 * 3 2 1 30 30 H 1.09002 * 109.49961 * 299.13033 * 6 4 2 31 31 H 1.08995 * 109.50245 * 59.24747 * 6 4 2 32 32 H 1.08996 * 109.52557 * 182.43890 * 7 6 4 33 33 H 1.08999 * 109.57662 * 62.28014 * 7 6 4 34 34 H 1.09001 * 109.50029 * 297.71383 * 8 7 6 35 35 H 1.09003 * 109.53708 * 177.61913 * 8 7 6 36 36 H 1.08997 * 109.46371 * 180.80833 * 9 8 7 37 37 H 1.09001 * 109.46483 * 60.83377 * 9 8 7 38 38 H 1.09002 * 109.47137 * 295.96365 * 11 10 4 39 39 H 1.08993 * 109.47064 * 55.96994 * 11 10 4 40 40 H 1.09004 * 109.46911 * 182.43961 * 12 11 10 41 41 H 1.08994 * 109.47388 * 302.43768 * 12 11 10 42 42 H 1.09003 * 109.46931 * 299.99647 * 14 13 12 43 43 H 1.09001 * 109.47366 * 59.98887 * 14 13 12 44 44 H 0.97003 * 119.99794 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1300 -0.7187 1.2504 6 6 1.5269 -0.0017 2.4985 7 6 2.0228 -0.7383 3.7458 8 6 1.5438 -2.1918 3.6947 9 6 2.0564 -2.8480 2.4108 10 7 1.5541 -2.1071 1.2467 11 6 1.9114 -2.7880 -0.0050 12 6 1.4784 -4.2535 0.0701 13 8 0.0576 -4.3240 0.2062 14 6 -0.4533 -5.6562 0.2862 15 6 -1.9529 -5.6115 0.4275 16 1 -2.4647 -4.6608 0.4541 17 6 -2.6716 -6.7842 0.5230 18 7 -3.9804 -6.7451 0.6469 19 14 -1.7865 -8.4285 0.4763 20 1 -1.4191 -8.8323 1.8574 21 1 -2.6799 -9.4549 -0.1184 22 1 -0.5568 -8.3056 -0.3471 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8932 -0.5139 -0.8901 27 1 1.6014 1.9829 0.8389 28 1 3.1258 1.4440 0.0946 29 1 1.7559 1.9283 -0.9335 30 1 1.9005 1.0222 2.5079 31 1 0.4370 0.0081 2.4909 32 1 1.6240 -0.2545 4.6373 33 1 3.1121 -0.7147 3.7749 34 1 0.4541 -2.2164 3.7060 35 1 1.9290 -2.7331 4.5590 36 1 1.7052 -3.8788 2.3645 37 1 3.1464 -2.8353 2.4066 38 1 1.4063 -2.3022 -0.8399 39 1 2.9901 -2.7350 -0.1523 40 1 1.7821 -4.7693 -0.8408 41 1 1.9498 -4.7280 0.9307 42 1 -0.1895 -6.2015 -0.6201 43 1 -0.0218 -6.1595 1.1514 44 1 -4.4860 -7.5702 0.7144 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338996727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:33 Heat of formation + Delta-G solvation = -58.130984 kcal Electronic energy + Delta-G solvation = -20322.894284 eV Core-core repulsion = 17467.729091 eV Total energy + Delta-G solvation = -2855.165193 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.71794 -36.84307 -34.96254 -33.70198 -32.47481 -29.42285 -29.03843 -27.24616 -27.02390 -24.19693 -23.65165 -21.79229 -20.92089 -20.33693 -18.72217 -16.79565 -16.30073 -15.63021 -15.14093 -14.97833 -14.51553 -14.31388 -14.17668 -14.04260 -13.32395 -13.02819 -12.89644 -12.54963 -12.47345 -12.33805 -12.07369 -11.86848 -11.54633 -11.22171 -11.05391 -10.93968 -10.85718 -10.74311 -10.68954 -10.52616 -10.33670 -9.94165 -9.85819 -9.79049 -9.11286 -8.77089 -8.39263 -7.94688 -6.06881 -4.04953 3.26842 3.33814 3.35308 4.01744 4.39111 4.69068 4.74527 4.80572 5.02029 5.10376 5.23153 5.24439 5.27714 5.36648 5.42351 5.51703 5.59871 5.62005 5.70051 5.76764 5.79222 5.86079 5.92540 5.96197 5.99441 6.04277 6.05329 6.09083 6.23100 6.25759 6.30961 6.36806 6.47130 6.56023 6.65351 6.78345 7.04874 7.37320 7.41960 7.65537 8.10719 8.73917 9.06844 9.53128 11.06329 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.005090 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.862790 B = 5499.620178 C = 5736.850488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.092 4.092 3 C -0.146 4.146 4 C 0.093 3.907 5 H 0.031 0.969 6 C -0.114 4.114 7 C -0.120 4.120 8 C -0.117 4.117 9 C 0.054 3.946 10 N -0.514 5.514 11 C 0.059 3.941 12 C 0.056 3.944 13 O -0.361 6.361 14 C 0.167 3.833 15 C -0.513 4.513 16 H 0.083 0.917 17 C 0.072 3.928 18 N -0.897 5.897 19 Si 0.874 3.126 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.267 1.267 23 H 0.052 0.948 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.052 0.948 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.084 0.916 37 H 0.022 0.978 38 H 0.086 0.914 39 H 0.034 0.966 40 H 0.039 0.961 41 H 0.039 0.961 42 H -0.001 1.001 43 H -0.005 1.005 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.383 12.825 2.137 20.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.016 4.016 5 H 0.049 0.951 6 C -0.151 4.151 7 C -0.157 4.157 8 C -0.154 4.154 9 C -0.074 4.074 10 N -0.239 5.239 11 C -0.068 4.068 12 C -0.022 4.022 13 O -0.280 6.280 14 C 0.092 3.908 15 C -0.551 4.551 16 H 0.101 0.899 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.701 3.299 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.192 1.192 23 H 0.071 0.929 24 H 0.061 0.939 25 H 0.098 0.902 26 H 0.086 0.914 27 H 0.076 0.924 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.080 0.920 36 H 0.103 0.897 37 H 0.040 0.960 38 H 0.104 0.896 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.057 0.943 42 H 0.017 0.983 43 H 0.012 0.988 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 14.579 12.874 2.193 19.573 hybrid contribution 1.499 -1.315 -0.084 1.995 sum 16.077 11.560 2.109 19.914 Atomic orbital electron populations 1.21809 0.93884 1.03851 1.00463 1.21188 0.97491 0.95193 0.97195 1.21881 1.00366 0.96408 1.01732 1.21634 0.95726 0.88903 0.95313 0.95131 1.21717 1.02327 0.97826 0.93272 1.21580 0.99903 0.96305 0.97953 1.21569 1.02455 0.95032 0.96392 1.22150 0.95873 0.98986 0.90381 1.61804 1.59727 1.00795 1.01570 1.22167 0.96997 0.94267 0.93396 1.22445 0.85946 0.94990 0.98786 1.88030 1.16756 1.29096 1.94097 1.20580 0.95797 0.80456 0.93969 1.20889 0.88685 0.95468 1.50042 0.89880 1.24760 0.94740 0.98666 0.94808 1.69883 1.05577 1.27889 1.50200 0.86876 0.80039 0.84167 0.78791 1.20015 1.20852 1.19209 0.92879 0.93875 0.90218 0.91384 0.92428 0.93271 0.92786 0.91894 0.90386 0.92152 0.92913 0.90507 0.92038 0.89739 0.96032 0.89580 0.94762 0.94282 0.94338 0.98315 0.98756 0.92467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 8.59 37.15 0.32 -1.58 16 2 C -0.09 -1.08 2.22 -90.63 -0.20 -1.28 16 3 C -0.15 -1.39 8.68 37.16 0.32 -1.07 16 4 C 0.09 1.15 1.66 -67.72 -0.11 1.04 16 5 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 6 C -0.11 -1.31 4.66 -26.65 -0.12 -1.43 16 7 C -0.12 -1.33 6.00 -26.61 -0.16 -1.49 16 8 C -0.12 -1.52 6.09 -26.65 -0.16 -1.68 16 9 C 0.05 0.77 5.04 -3.83 -0.02 0.75 16 10 N -0.51 -7.68 3.76 -226.68 -0.85 -8.53 16 11 C 0.06 0.89 4.75 -3.82 -0.02 0.87 16 12 C 0.06 1.00 5.56 37.16 0.21 1.21 16 13 O -0.36 -8.46 10.23 -35.23 -0.36 -8.82 16 14 C 0.17 4.31 4.76 36.01 0.17 4.48 16 15 C -0.51 -15.42 9.99 -34.44 -0.34 -15.77 16 16 H 0.08 2.75 8.06 -52.49 -0.42 2.32 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 19 Si 0.87 21.65 27.47 -169.99 -4.67 16.98 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.27 -6.36 6.54 56.52 0.37 -5.99 16 23 H 0.05 0.68 6.41 -51.93 -0.33 0.34 16 24 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 25 H 0.08 1.32 7.31 -51.92 -0.38 0.94 16 26 H 0.07 0.82 6.41 -51.92 -0.33 0.48 16 27 H 0.06 0.52 6.75 -51.93 -0.35 0.17 16 28 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.62 6.60 -51.93 -0.34 0.28 16 31 H 0.08 1.01 6.39 -51.93 -0.33 0.67 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.08 1.37 5.79 -51.93 -0.30 1.07 16 37 H 0.02 0.28 8.14 -51.93 -0.42 -0.14 16 38 H 0.09 1.31 6.17 -51.93 -0.32 0.99 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.04 0.65 6.04 -51.93 -0.31 0.34 16 42 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 43 H -0.01 -0.13 7.57 -51.93 -0.39 -0.52 16 44 H 0.27 7.67 8.31 -40.82 -0.34 7.33 16 LS Contribution 328.19 15.07 4.95 4.95 Total: -1.00 -31.21 328.19 -8.39 -39.60 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -8.01 Total: -3.07 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: -0.22 Total: -13.92 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.08 Total: -35.71 kcal Atomic # 8 Polarization: -8.46 SS G_CDS: -0.36 Total: -8.82 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.21 -8.39 -39.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338996727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.529 kcal (2) G-P(sol) polarization free energy of solvation -31.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds