Wall clock time and date at job start Mon Mar 30 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53000 * 109.47339 * 2 1 4 4 C 1.52995 * 109.47612 * 120.00476 * 2 1 3 5 5 H 1.09004 * 109.46622 * 180.16393 * 4 2 1 6 6 C 1.53043 * 109.45288 * 300.13875 * 4 2 1 7 7 C 1.53110 * 109.28066 * 179.18931 * 6 4 2 8 8 C 1.53122 * 109.16200 * 302.34634 * 7 6 4 9 9 C 1.53032 * 109.28051 * 57.65341 * 8 7 6 10 10 N 1.46851 * 109.46391 * 60.18203 * 4 2 1 11 11 C 1.46903 * 110.99634 * 54.16030 * 10 4 2 12 12 C 1.53002 * 109.46600 * 175.96828 * 11 10 4 13 13 O 1.42896 * 109.47291 * 62.44653 * 12 11 10 14 14 C 1.42901 * 114.00294 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47558 * 179.97438 * 14 13 12 16 16 H 1.08001 * 119.99652 * 359.97438 * 15 14 13 17 17 C 1.37872 * 119.99971 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99618 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00194 * 359.97438 * 17 15 14 20 20 H 1.48505 * 109.47118 * 90.00071 * 19 17 15 21 21 H 1.48503 * 109.47232 * 210.00060 * 19 17 15 22 22 H 1.48501 * 109.47162 * 330.00092 * 19 17 15 23 23 H 1.08999 * 109.47213 * 299.99549 * 1 2 3 24 24 H 1.09003 * 109.47707 * 59.99771 * 1 2 3 25 25 H 1.09009 * 109.46961 * 179.97438 * 1 2 3 26 26 H 1.09011 * 109.46906 * 240.00250 * 2 1 3 27 27 H 1.09003 * 109.46847 * 54.71799 * 3 2 1 28 28 H 1.08996 * 109.47574 * 174.71856 * 3 2 1 29 29 H 1.09003 * 109.47258 * 294.72225 * 3 2 1 30 30 H 1.09002 * 109.49961 * 299.13033 * 6 4 2 31 31 H 1.08995 * 109.50245 * 59.24747 * 6 4 2 32 32 H 1.08996 * 109.52557 * 182.43890 * 7 6 4 33 33 H 1.08999 * 109.57662 * 62.28014 * 7 6 4 34 34 H 1.09001 * 109.50029 * 297.71383 * 8 7 6 35 35 H 1.09003 * 109.53708 * 177.61913 * 8 7 6 36 36 H 1.08997 * 109.46371 * 180.80833 * 9 8 7 37 37 H 1.09001 * 109.46483 * 60.83377 * 9 8 7 38 38 H 1.09002 * 109.47137 * 295.96365 * 11 10 4 39 39 H 1.08993 * 109.47064 * 55.96994 * 11 10 4 40 40 H 1.09004 * 109.46911 * 182.43961 * 12 11 10 41 41 H 1.08994 * 109.47388 * 302.43768 * 12 11 10 42 42 H 1.09003 * 109.46931 * 299.99647 * 14 13 12 43 43 H 1.09001 * 109.47366 * 59.98887 * 14 13 12 44 44 H 0.97003 * 119.99794 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 1 3.1300 -0.7187 1.2504 6 6 1.5269 -0.0017 2.4985 7 6 2.0228 -0.7383 3.7458 8 6 1.5438 -2.1918 3.6947 9 6 2.0564 -2.8480 2.4108 10 7 1.5541 -2.1071 1.2467 11 6 1.9114 -2.7880 -0.0050 12 6 1.4784 -4.2535 0.0701 13 8 0.0576 -4.3240 0.2062 14 6 -0.4533 -5.6562 0.2862 15 6 -1.9529 -5.6115 0.4275 16 1 -2.4647 -4.6608 0.4541 17 6 -2.6716 -6.7842 0.5230 18 7 -3.9804 -6.7451 0.6469 19 14 -1.7865 -8.4285 0.4763 20 1 -1.4191 -8.8323 1.8574 21 1 -2.6799 -9.4549 -0.1184 22 1 -0.5568 -8.3056 -0.3471 23 1 -0.3633 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0278 -0.0005 26 1 1.8932 -0.5139 -0.8901 27 1 1.6014 1.9829 0.8389 28 1 3.1258 1.4440 0.0946 29 1 1.7559 1.9283 -0.9335 30 1 1.9005 1.0222 2.5079 31 1 0.4370 0.0081 2.4909 32 1 1.6240 -0.2545 4.6373 33 1 3.1121 -0.7147 3.7749 34 1 0.4541 -2.2164 3.7060 35 1 1.9290 -2.7331 4.5590 36 1 1.7052 -3.8788 2.3645 37 1 3.1464 -2.8353 2.4066 38 1 1.4063 -2.3022 -0.8399 39 1 2.9901 -2.7350 -0.1523 40 1 1.7821 -4.7693 -0.8408 41 1 1.9498 -4.7280 0.9307 42 1 -0.1895 -6.2015 -0.6201 43 1 -0.0218 -6.1595 1.1514 44 1 -4.4860 -7.5702 0.7144 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338996727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:33 Heat of formation + Delta-G solvation = -78.189232 kcal Electronic energy + Delta-G solvation = -20323.764075 eV Core-core repulsion = 17467.729091 eV Total energy + Delta-G solvation = -2856.034984 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.78043 -38.52127 -35.97430 -35.12084 -34.47207 -30.74771 -30.39279 -28.99481 -27.97198 -25.33298 -24.65729 -23.94427 -22.14029 -21.33449 -19.73826 -19.01267 -17.48574 -17.39333 -16.51926 -16.17557 -16.01488 -15.75921 -15.30321 -15.17760 -14.70460 -14.32081 -14.27086 -14.09693 -13.69153 -13.42806 -13.37844 -13.04897 -12.87952 -12.72331 -12.50787 -12.26866 -12.19784 -11.91758 -11.84829 -11.81542 -11.62588 -11.39672 -11.27209 -10.99216 -10.91217 -10.81578 -10.26209 -9.01889 -8.36249 -6.43502 1.31989 1.35345 1.46163 2.29379 2.92532 2.96202 3.16829 3.77915 3.85840 4.00546 4.09892 4.18702 4.26475 4.32022 4.37189 4.45570 4.47778 4.51454 4.56208 4.64290 4.71172 4.80189 4.87392 4.88316 4.89137 4.97113 5.04420 5.06513 5.10025 5.14561 5.16348 5.26822 5.29034 5.39017 5.45639 5.50409 5.56630 5.63650 5.96090 6.28180 6.38382 6.60876 6.81836 7.21121 8.81207 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.026165 B = 0.005090 C = 0.004880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.862790 B = 5499.620178 C = 5736.850488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.089 4.089 3 C -0.140 4.140 4 C 0.094 3.906 5 H 0.044 0.956 6 C -0.113 4.113 7 C -0.114 4.114 8 C -0.117 4.117 9 C 0.055 3.945 10 N -0.540 5.540 11 C 0.066 3.934 12 C 0.048 3.952 13 O -0.388 6.388 14 C 0.180 3.820 15 C -0.540 4.540 16 H 0.027 0.973 17 C 0.013 3.987 18 N -0.943 5.943 19 Si 0.955 3.045 20 H -0.260 1.260 21 H -0.273 1.273 22 H -0.247 1.247 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.037 0.963 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.059 0.941 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.045 0.955 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.041 0.959 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.053 0.947 41 H 0.049 0.951 42 H 0.008 0.992 43 H 0.005 0.995 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.510 12.704 2.272 22.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.108 4.108 3 C -0.197 4.197 4 C -0.014 4.014 5 H 0.062 0.938 6 C -0.150 4.150 7 C -0.152 4.152 8 C -0.155 4.155 9 C -0.073 4.073 10 N -0.266 5.266 11 C -0.062 4.062 12 C -0.029 4.029 13 O -0.307 6.307 14 C 0.104 3.896 15 C -0.578 4.578 16 H 0.046 0.954 17 C -0.185 4.185 18 N -0.583 5.583 19 Si 0.777 3.223 20 H -0.184 1.184 21 H -0.198 1.198 22 H -0.170 1.170 23 H 0.073 0.927 24 H 0.068 0.932 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.104 0.896 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.064 0.936 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.059 0.941 38 H 0.096 0.904 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.026 0.974 43 H 0.023 0.977 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 17.721 12.781 2.326 21.973 hybrid contribution 0.455 -1.169 -0.124 1.261 sum 18.177 11.612 2.203 21.681 Atomic orbital electron populations 1.21718 0.95662 1.01162 1.00870 1.21178 0.95829 0.96900 0.96910 1.21822 1.01158 0.94440 1.02323 1.21704 0.96328 0.87446 0.95919 0.93797 1.21720 1.01030 0.99077 0.93179 1.21552 1.00832 0.94585 0.98185 1.21561 1.00502 0.96930 0.96467 1.22102 0.96834 0.97652 0.90705 1.61768 1.61010 1.02179 1.01628 1.22097 0.98418 0.92287 0.93380 1.22785 0.82757 0.97486 0.99879 1.87994 1.20533 1.27824 1.94338 1.20266 0.92945 0.81880 0.94507 1.21135 0.91466 0.93788 1.51389 0.95432 1.25830 0.95544 1.03550 0.93539 1.70045 1.07725 1.29703 1.50826 0.85611 0.79278 0.77564 0.79880 1.18448 1.19754 1.17025 0.92745 0.93197 0.94351 0.91658 0.91928 0.91870 0.92219 0.89601 0.92573 0.91057 0.91228 0.93642 0.90668 0.92334 0.94103 0.90413 0.91763 0.92847 0.93257 0.97405 0.97708 0.91862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.72 8.59 71.98 0.62 -3.11 16 2 C -0.09 -1.98 2.22 -10.80 -0.02 -2.00 16 3 C -0.14 -2.29 8.68 71.98 0.63 -1.66 16 4 C 0.09 2.16 1.66 44.94 0.07 2.24 16 5 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 6 C -0.11 -2.40 4.66 30.65 0.14 -2.26 16 7 C -0.11 -2.30 6.00 30.67 0.18 -2.12 16 8 C -0.12 -2.98 6.09 30.65 0.19 -2.80 16 9 C 0.05 1.52 5.04 86.32 0.43 1.96 16 10 N -0.54 -15.91 3.76 -871.09 -3.27 -19.18 16 11 C 0.07 1.90 4.75 86.30 0.41 2.31 16 12 C 0.05 1.67 5.56 71.98 0.40 2.07 16 13 O -0.39 -18.62 10.23 -148.98 -1.52 -20.15 16 14 C 0.18 9.31 4.76 71.24 0.34 9.65 16 15 C -0.54 -33.85 9.99 25.60 0.26 -33.60 16 16 H 0.03 1.96 8.06 -2.91 -0.02 1.93 16 17 C 0.01 0.79 5.47 84.65 0.46 1.25 16 18 N -0.94 -60.57 13.96 21.45 0.30 -60.27 16 19 Si 0.96 44.28 27.47 68.60 1.88 46.16 16 20 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 22 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 23 H 0.05 1.43 6.41 -2.39 -0.02 1.41 16 24 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 25 H 0.04 1.35 7.31 -2.38 -0.02 1.33 16 26 H 0.07 1.48 6.41 -2.38 -0.02 1.47 16 27 H 0.06 0.97 6.75 -2.39 -0.02 0.95 16 28 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.45 6.60 -2.39 -0.02 1.43 16 31 H 0.06 1.45 6.39 -2.39 -0.02 1.43 16 32 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.06 1.91 5.79 -2.39 -0.01 1.89 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 2.36 6.17 -2.39 -0.01 2.35 16 39 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 1.62 6.04 -2.39 -0.01 1.60 16 42 H 0.01 0.41 7.20 -2.39 -0.02 0.39 16 43 H 0.01 0.26 7.57 -2.39 -0.02 0.24 16 44 H 0.27 16.01 8.31 -92.71 -0.77 15.24 16 Total: -1.00 -70.74 328.19 2.38 -68.36 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: 0.88 Total: 13.14 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.11 Total: -28.06 kcal Atomic # 7 Polarization: -76.48 SS G_CDS: -2.97 Total: -79.45 kcal Atomic # 8 Polarization: -18.62 SS G_CDS: -1.52 Total: -20.15 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 1.88 Total: 46.16 kcal Total: -70.74 2.38 -68.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338996727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.829 kcal (2) G-P(sol) polarization free energy of solvation -70.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds