Wall clock time and date at job start Mon Mar 30 2020 06:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47359 * 2 1 4 4 C 1.53000 * 109.46892 * 239.99865 * 2 1 3 5 5 H 1.09008 * 109.46103 * 179.97438 * 4 2 1 6 6 C 1.53040 * 109.46208 * 59.97527 * 4 2 1 7 7 C 1.53117 * 109.27796 * 180.80098 * 6 4 2 8 8 C 1.53114 * 109.15966 * 57.65418 * 7 6 4 9 9 C 1.53037 * 109.27815 * 302.34326 * 8 7 6 10 10 N 1.46837 * 109.52422 * 59.18085 * 9 8 7 11 11 C 1.46907 * 111.00267 * 174.15906 * 10 9 8 12 12 C 1.52997 * 109.46852 * 286.76126 * 11 10 9 13 13 O 1.42909 * 109.46959 * 67.40257 * 12 11 10 14 14 C 1.42901 * 113.99980 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.46865 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00636 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99498 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00331 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99711 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46712 * 90.00113 * 19 17 15 21 21 H 1.48492 * 109.47175 * 209.99966 * 19 17 15 22 22 H 1.48496 * 109.46999 * 330.00285 * 19 17 15 23 23 H 1.09003 * 109.46954 * 59.99971 * 1 2 3 24 24 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47469 * 299.99851 * 1 2 3 26 26 H 1.08995 * 109.47093 * 120.00316 * 2 1 3 27 27 H 1.09009 * 109.47117 * 56.79940 * 3 2 1 28 28 H 1.08997 * 109.47352 * 176.79193 * 3 2 1 29 29 H 1.08999 * 109.47318 * 296.80203 * 3 2 1 30 30 H 1.08993 * 109.50428 * 300.74075 * 6 4 2 31 31 H 1.08999 * 109.50417 * 60.85906 * 6 4 2 32 32 H 1.09002 * 109.52294 * 297.74500 * 7 6 4 33 33 H 1.09005 * 109.57429 * 177.59317 * 7 6 4 34 34 H 1.09013 * 109.50155 * 182.40630 * 8 7 6 35 35 H 1.08994 * 109.50660 * 62.29091 * 8 7 6 36 36 H 1.08998 * 109.46650 * 299.16131 * 9 8 7 37 37 H 1.09007 * 109.45243 * 179.19653 * 9 8 7 38 38 H 1.09001 * 109.46961 * 46.76315 * 11 10 9 39 39 H 1.08998 * 109.47151 * 166.76364 * 11 10 9 40 40 H 1.09001 * 109.46851 * 187.39024 * 12 11 10 41 41 H 1.08999 * 109.47830 * 307.40095 * 12 11 10 42 42 H 1.09000 * 109.46887 * 299.99482 * 14 13 12 43 43 H 1.09006 * 109.47259 * 59.99614 * 14 13 12 44 44 H 0.96999 * 119.99968 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 1 3.1300 -0.7208 -1.2493 6 6 1.5291 -0.0001 -2.4987 7 6 2.0252 -0.7368 -3.7459 8 6 1.5439 -2.1894 -3.6962 9 6 2.0543 -2.8472 -2.4121 10 7 1.5520 -2.1063 -1.2482 11 6 1.9070 -2.7885 0.0035 12 6 1.0406 -4.0390 0.1662 13 8 1.3881 -4.9933 -0.8392 14 6 0.6335 -6.2052 -0.7758 15 6 1.0801 -7.1331 -1.8761 16 1 1.8616 -6.8278 -2.5560 17 6 0.4908 -8.3719 -2.0147 18 7 -0.4613 -8.7435 -1.1870 19 14 1.0438 -9.5218 -3.3790 20 1 2.1511 -10.3792 -2.8851 21 1 -0.0955 -10.3771 -3.7977 22 1 1.5156 -8.7232 -4.5386 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6306 1.9726 0.8600 28 1 3.1285 1.4430 0.0575 29 1 1.7243 1.9395 -0.9172 30 1 0.4393 0.0114 -2.4922 31 1 1.9043 1.0233 -2.5071 32 1 3.1147 -0.7146 -3.7729 33 1 1.6289 -0.2520 -4.6382 34 1 1.9298 -2.7304 -4.5604 35 1 0.4543 -2.2125 -3.7087 36 1 3.1443 -2.8363 -2.4069 37 1 1.7013 -3.8775 -2.3669 38 1 2.9581 -3.0758 -0.0248 39 1 1.7366 -2.1165 0.8446 40 1 1.2094 -4.4722 1.1521 41 1 -0.0103 -3.7689 0.0630 42 1 0.7942 -6.6831 0.1906 43 1 -0.4260 -5.9803 -0.8983 44 1 -0.8756 -9.6152 -1.2843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338996728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:36 Heat of formation + Delta-G solvation = -64.334315 kcal Electronic energy + Delta-G solvation = -20271.384781 eV Core-core repulsion = 17415.950591 eV Total energy + Delta-G solvation = -2855.434190 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.62579 -36.70357 -34.89814 -33.57175 -32.53335 -29.28709 -28.82956 -27.16657 -26.76104 -23.77618 -23.59042 -22.22439 -21.10493 -20.15489 -18.69509 -16.40644 -16.18371 -15.61901 -15.02286 -14.85563 -14.59407 -14.27197 -14.18515 -13.79534 -13.35775 -13.11833 -12.69356 -12.53837 -12.53034 -12.01341 -11.87461 -11.58383 -11.32081 -11.19630 -11.05948 -10.97213 -10.82114 -10.75102 -10.67369 -10.49061 -10.35372 -10.15458 -9.80345 -9.64822 -9.04326 -8.73792 -8.10707 -7.88637 -6.08776 -4.10317 3.31151 3.36338 3.41336 4.14427 4.36542 4.71693 4.78100 4.99385 5.07439 5.13604 5.27082 5.27874 5.29131 5.38614 5.47759 5.65874 5.69909 5.73830 5.77869 5.82812 5.85664 5.90654 6.00297 6.03576 6.06866 6.14062 6.18306 6.19521 6.25582 6.33981 6.39269 6.41945 6.56018 6.65959 6.94677 7.17713 7.46386 7.51869 7.58287 7.81161 8.18878 8.61700 9.03374 9.54541 11.02738 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.004823 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.837831 B = 5804.131708 C = 6403.292777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.095 4.095 3 C -0.148 4.148 4 C 0.088 3.912 5 H 0.032 0.968 6 C -0.111 4.111 7 C -0.122 4.122 8 C -0.116 4.116 9 C 0.044 3.956 10 N -0.523 5.523 11 C 0.053 3.947 12 C 0.068 3.932 13 O -0.392 6.392 14 C 0.195 3.805 15 C -0.513 4.513 16 H 0.065 0.935 17 C 0.057 3.943 18 N -0.898 5.898 19 Si 0.906 3.094 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.054 0.946 24 H 0.069 0.931 25 H 0.043 0.957 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.050 0.950 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.062 0.938 35 H 0.068 0.932 36 H 0.020 0.980 37 H 0.122 0.878 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.003 0.997 43 H 0.005 0.995 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.797 18.649 0.654 19.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.205 4.205 4 C -0.020 4.020 5 H 0.050 0.950 6 C -0.149 4.149 7 C -0.159 4.159 8 C -0.153 4.153 9 C -0.082 4.082 10 N -0.248 5.248 11 C -0.075 4.075 12 C -0.010 4.010 13 O -0.312 6.312 14 C 0.121 3.879 15 C -0.551 4.551 16 H 0.083 0.917 17 C -0.144 4.144 18 N -0.538 5.538 19 Si 0.733 3.267 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.196 1.196 23 H 0.073 0.927 24 H 0.088 0.912 25 H 0.062 0.938 26 H 0.089 0.911 27 H 0.072 0.928 28 H 0.069 0.931 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.140 0.860 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.305 18.533 0.512 18.832 hybrid contribution 0.931 -0.794 -0.338 1.270 sum 4.236 17.738 0.175 18.238 Atomic orbital electron populations 1.21779 0.94419 1.02946 1.00584 1.21253 0.97068 0.95426 0.97598 1.21897 1.00581 0.96262 1.01799 1.21611 0.96155 0.89431 0.94839 0.94988 1.21699 1.01811 0.97790 0.93601 1.21611 1.00105 0.96670 0.97544 1.21581 1.01669 0.94644 0.97447 1.22512 0.96333 1.00893 0.88510 1.61916 1.59770 1.00693 1.02442 1.22269 0.97929 0.94761 0.92492 1.22266 0.97919 0.89129 0.91686 1.87771 1.63797 1.28150 1.51481 1.20173 0.90726 0.80250 0.96790 1.21048 1.20610 0.99442 1.14021 0.91678 1.24937 0.94945 0.97843 0.96707 1.69962 1.25359 1.21049 1.37380 0.86374 0.78120 0.80377 0.81844 1.20547 1.21108 1.19637 0.92747 0.91164 0.93839 0.91148 0.92802 0.93127 0.92320 0.90839 0.92029 0.92843 0.92427 0.91932 0.91296 0.96138 0.85998 0.94543 0.89926 0.94445 0.93633 0.97955 0.97688 0.92706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.68 37.16 0.32 -1.22 16 2 C -0.09 -1.03 2.27 -90.62 -0.21 -1.23 16 3 C -0.15 -1.32 8.93 37.16 0.33 -0.99 16 4 C 0.09 1.11 1.66 -67.72 -0.11 1.00 16 5 H 0.03 0.43 8.14 -51.92 -0.42 0.00 16 6 C -0.11 -1.28 4.67 -26.65 -0.12 -1.40 16 7 C -0.12 -1.46 6.00 -26.61 -0.16 -1.62 16 8 C -0.12 -1.68 6.09 -26.65 -0.16 -1.84 16 9 C 0.04 0.75 5.18 -3.84 -0.02 0.73 16 10 N -0.52 -8.00 3.68 -226.69 -0.83 -8.83 16 11 C 0.05 0.83 5.24 -3.82 -0.02 0.81 16 12 C 0.07 1.28 6.23 37.16 0.23 1.51 16 13 O -0.39 -9.22 7.31 -35.23 -0.26 -9.48 16 14 C 0.19 5.32 5.69 36.00 0.20 5.53 16 15 C -0.51 -14.99 9.43 -34.44 -0.32 -15.32 16 16 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 19 Si 0.91 21.86 29.54 -169.99 -5.02 16.84 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H 0.05 0.58 6.41 -51.93 -0.33 0.25 16 24 H 0.07 0.91 7.51 -51.93 -0.39 0.52 16 25 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.07 0.78 5.97 -51.93 -0.31 0.47 16 27 H 0.05 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.06 0.50 6.28 -51.93 -0.33 0.18 16 30 H 0.07 0.89 6.39 -51.93 -0.33 0.55 16 31 H 0.06 0.61 6.41 -51.93 -0.33 0.28 16 32 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.88 8.14 -51.92 -0.42 0.46 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 37 H 0.12 2.53 5.11 -51.92 -0.27 2.27 16 38 H 0.04 0.60 8.04 -51.93 -0.42 0.18 16 39 H 0.08 1.09 5.34 -51.93 -0.28 0.81 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 42 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 43 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 330.09 15.07 4.97 4.97 Total: -1.00 -29.73 330.09 -8.56 -38.29 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -8.02 Total: -3.04 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.14 Total: -12.52 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: -0.10 Total: -35.07 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.26 Total: -9.48 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -29.73 -8.56 -38.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338996728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.042 kcal (2) G-P(sol) polarization free energy of solvation -29.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds