Wall clock time and date at job start Mon Mar 30 2020 06:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47359 * 2 1 4 4 C 1.53000 * 109.46892 * 239.99865 * 2 1 3 5 5 H 1.09008 * 109.46103 * 179.97438 * 4 2 1 6 6 C 1.53040 * 109.46208 * 59.97527 * 4 2 1 7 7 C 1.53117 * 109.27796 * 180.80098 * 6 4 2 8 8 C 1.53114 * 109.15966 * 57.65418 * 7 6 4 9 9 C 1.53037 * 109.27815 * 302.34326 * 8 7 6 10 10 N 1.46837 * 109.52422 * 59.18085 * 9 8 7 11 11 C 1.46907 * 111.00267 * 174.15906 * 10 9 8 12 12 C 1.52997 * 109.46852 * 286.76126 * 11 10 9 13 13 O 1.42909 * 109.46959 * 67.40257 * 12 11 10 14 14 C 1.42901 * 113.99980 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.46865 * 179.97438 * 14 13 12 16 16 H 1.07995 * 120.00636 * 359.97438 * 15 14 13 17 17 C 1.37882 * 119.99498 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00331 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99711 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46712 * 90.00113 * 19 17 15 21 21 H 1.48492 * 109.47175 * 209.99966 * 19 17 15 22 22 H 1.48496 * 109.46999 * 330.00285 * 19 17 15 23 23 H 1.09003 * 109.46954 * 59.99971 * 1 2 3 24 24 H 1.09001 * 109.47272 * 179.97438 * 1 2 3 25 25 H 1.09002 * 109.47469 * 299.99851 * 1 2 3 26 26 H 1.08995 * 109.47093 * 120.00316 * 2 1 3 27 27 H 1.09009 * 109.47117 * 56.79940 * 3 2 1 28 28 H 1.08997 * 109.47352 * 176.79193 * 3 2 1 29 29 H 1.08999 * 109.47318 * 296.80203 * 3 2 1 30 30 H 1.08993 * 109.50428 * 300.74075 * 6 4 2 31 31 H 1.08999 * 109.50417 * 60.85906 * 6 4 2 32 32 H 1.09002 * 109.52294 * 297.74500 * 7 6 4 33 33 H 1.09005 * 109.57429 * 177.59317 * 7 6 4 34 34 H 1.09013 * 109.50155 * 182.40630 * 8 7 6 35 35 H 1.08994 * 109.50660 * 62.29091 * 8 7 6 36 36 H 1.08998 * 109.46650 * 299.16131 * 9 8 7 37 37 H 1.09007 * 109.45243 * 179.19653 * 9 8 7 38 38 H 1.09001 * 109.46961 * 46.76315 * 11 10 9 39 39 H 1.08998 * 109.47151 * 166.76364 * 11 10 9 40 40 H 1.09001 * 109.46851 * 187.39024 * 12 11 10 41 41 H 1.08999 * 109.47830 * 307.40095 * 12 11 10 42 42 H 1.09000 * 109.46887 * 299.99482 * 14 13 12 43 43 H 1.09006 * 109.47259 * 59.99614 * 14 13 12 44 44 H 0.96999 * 119.99968 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2492 5 1 3.1300 -0.7208 -1.2493 6 6 1.5291 -0.0001 -2.4987 7 6 2.0252 -0.7368 -3.7459 8 6 1.5439 -2.1894 -3.6962 9 6 2.0543 -2.8472 -2.4121 10 7 1.5520 -2.1063 -1.2482 11 6 1.9070 -2.7885 0.0035 12 6 1.0406 -4.0390 0.1662 13 8 1.3881 -4.9933 -0.8392 14 6 0.6335 -6.2052 -0.7758 15 6 1.0801 -7.1331 -1.8761 16 1 1.8616 -6.8278 -2.5560 17 6 0.4908 -8.3719 -2.0147 18 7 -0.4613 -8.7435 -1.1870 19 14 1.0438 -9.5218 -3.3790 20 1 2.1511 -10.3792 -2.8851 21 1 -0.0955 -10.3771 -3.7977 22 1 1.5156 -8.7232 -4.5386 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5138 0.8900 26 1 1.8933 -0.5139 0.8899 27 1 1.6306 1.9726 0.8600 28 1 3.1285 1.4430 0.0575 29 1 1.7243 1.9395 -0.9172 30 1 0.4393 0.0114 -2.4922 31 1 1.9043 1.0233 -2.5071 32 1 3.1147 -0.7146 -3.7729 33 1 1.6289 -0.2520 -4.6382 34 1 1.9298 -2.7304 -4.5604 35 1 0.4543 -2.2125 -3.7087 36 1 3.1443 -2.8363 -2.4069 37 1 1.7013 -3.8775 -2.3669 38 1 2.9581 -3.0758 -0.0248 39 1 1.7366 -2.1165 0.8446 40 1 1.2094 -4.4722 1.1521 41 1 -0.0103 -3.7689 0.0630 42 1 0.7942 -6.6831 0.1906 43 1 -0.4260 -5.9803 -0.8983 44 1 -0.8756 -9.6152 -1.2843 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338996728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:35 Heat of formation + Delta-G solvation = -81.579032 kcal Electronic energy + Delta-G solvation = -20272.132568 eV Core-core repulsion = 17415.950591 eV Total energy + Delta-G solvation = -2856.181977 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.75780 -38.48361 -35.90640 -35.16458 -34.41226 -30.45641 -30.33018 -28.77087 -27.93169 -25.05057 -24.71815 -24.29824 -22.45652 -21.23831 -19.71297 -18.61796 -17.59396 -17.25310 -16.51576 -16.15680 -16.06838 -15.73829 -15.36727 -15.20259 -14.66603 -14.34175 -14.09264 -13.79714 -13.51441 -13.39432 -13.17900 -12.99017 -12.76030 -12.74134 -12.54155 -12.44610 -12.23431 -12.15167 -11.87554 -11.76797 -11.58705 -11.34876 -11.30039 -11.00480 -10.84520 -10.69213 -10.10117 -9.14203 -8.31396 -6.43430 1.39217 1.41956 1.53914 2.34443 2.95345 3.02561 3.22005 3.78817 3.89081 4.01794 4.08946 4.24436 4.30217 4.37243 4.40755 4.46727 4.54419 4.57433 4.65987 4.74129 4.79085 4.87163 4.91201 4.93341 4.96907 5.05150 5.10912 5.11929 5.16231 5.19593 5.21994 5.26650 5.35927 5.49411 5.52698 5.55274 5.57863 5.64430 5.97867 6.22378 6.38433 6.55451 6.84113 7.28512 8.81043 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.030666 B = 0.004823 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.837831 B = 5804.131708 C = 6403.292777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.092 4.092 3 C -0.143 4.143 4 C 0.087 3.913 5 H 0.030 0.970 6 C -0.108 4.108 7 C -0.116 4.116 8 C -0.113 4.113 9 C 0.048 3.952 10 N -0.530 5.530 11 C 0.063 3.937 12 C 0.060 3.940 13 O -0.397 6.397 14 C 0.210 3.790 15 C -0.543 4.543 16 H 0.061 0.939 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.981 3.019 20 H -0.268 1.268 21 H -0.275 1.275 22 H -0.264 1.264 23 H 0.057 0.943 24 H 0.045 0.955 25 H 0.056 0.944 26 H 0.068 0.932 27 H 0.064 0.936 28 H 0.054 0.946 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.076 0.924 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.016 0.984 37 H 0.079 0.921 38 H 0.029 0.971 39 H 0.113 0.887 40 H 0.045 0.955 41 H 0.041 0.959 42 H -0.018 1.018 43 H -0.018 1.018 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.590 20.275 -0.015 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.111 4.111 3 C -0.200 4.200 4 C -0.021 4.021 5 H 0.048 0.952 6 C -0.146 4.146 7 C -0.154 4.154 8 C -0.151 4.151 9 C -0.080 4.080 10 N -0.255 5.255 11 C -0.065 4.065 12 C -0.017 4.017 13 O -0.317 6.317 14 C 0.135 3.865 15 C -0.581 4.581 16 H 0.079 0.921 17 C -0.191 4.191 18 N -0.571 5.571 19 Si 0.804 3.196 20 H -0.193 1.193 21 H -0.200 1.200 22 H -0.189 1.189 23 H 0.076 0.924 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.094 0.906 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.034 0.966 37 H 0.097 0.903 38 H 0.048 0.952 39 H 0.130 0.870 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.000 1.000 43 H -0.001 1.001 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.102 20.188 -0.144 20.601 hybrid contribution 0.655 -1.244 -0.063 1.407 sum 4.758 18.944 -0.207 19.533 Atomic orbital electron populations 1.21739 0.94613 1.01577 1.01487 1.21245 0.96798 0.96660 0.96373 1.21853 1.00867 0.94599 1.02702 1.21743 0.96048 0.87684 0.96621 0.95236 1.21710 1.01530 0.98797 0.92527 1.21581 1.00389 0.94639 0.98764 1.21546 1.00836 0.96641 0.96108 1.22314 0.95884 0.99204 0.90554 1.61901 1.60023 1.02037 1.01556 1.22215 0.96536 0.93722 0.94003 1.22563 0.98595 0.89558 0.90972 1.87808 1.63174 1.27518 1.53182 1.19771 0.89726 0.81598 0.95391 1.21356 1.21257 1.00660 1.14828 0.92080 1.25939 0.94590 0.99343 0.99270 1.70075 1.26159 1.21834 1.38992 0.85217 0.78123 0.77901 0.78387 1.19346 1.19969 1.18851 0.92369 0.93626 0.92462 0.91365 0.91725 0.92672 0.91613 0.91323 0.89509 0.92383 0.90584 0.91911 0.92476 0.96609 0.90313 0.95242 0.86956 0.93681 0.94105 0.99998 1.00065 0.92115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 8.68 71.98 0.63 -2.15 16 2 C -0.09 -1.78 2.27 -10.80 -0.02 -1.80 16 3 C -0.14 -2.07 8.93 71.98 0.64 -1.43 16 4 C 0.09 2.04 1.66 44.94 0.07 2.11 16 5 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 6 C -0.11 -2.22 4.67 30.65 0.14 -2.08 16 7 C -0.12 -2.57 6.00 30.67 0.18 -2.38 16 8 C -0.11 -3.29 6.09 30.64 0.19 -3.10 16 9 C 0.05 1.66 5.18 86.33 0.45 2.11 16 10 N -0.53 -16.16 3.68 -871.12 -3.21 -19.36 16 11 C 0.06 1.96 5.24 86.30 0.45 2.41 16 12 C 0.06 2.35 6.23 71.98 0.45 2.80 16 13 O -0.40 -19.58 7.31 -148.98 -1.09 -20.67 16 14 C 0.21 12.06 5.69 71.23 0.41 12.47 16 15 C -0.54 -32.74 9.43 25.60 0.24 -32.50 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 17 C 0.01 0.41 5.46 84.66 0.46 0.87 16 18 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 19 Si 0.98 44.92 29.54 68.60 2.03 46.94 16 20 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 21 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 22 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 23 H 0.06 1.13 6.41 -2.39 -0.02 1.11 16 24 H 0.04 1.15 7.51 -2.39 -0.02 1.13 16 25 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 26 H 0.07 1.35 5.97 -2.39 -0.01 1.33 16 27 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.87 6.28 -2.39 -0.01 0.86 16 30 H 0.07 1.51 6.39 -2.39 -0.02 1.49 16 31 H 0.09 1.39 6.41 -2.39 -0.02 1.38 16 32 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 34 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 35 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.02 0.54 8.14 -2.39 -0.02 0.53 16 37 H 0.08 3.45 5.11 -2.38 -0.01 3.43 16 38 H 0.03 0.96 8.04 -2.39 -0.02 0.94 16 39 H 0.11 2.83 5.34 -2.39 -0.01 2.82 16 40 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 41 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 42 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 43 H -0.02 -1.12 8.14 -2.38 -0.02 -1.14 16 44 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -65.42 330.09 3.24 -62.18 By element: Atomic # 1 Polarization: 9.20 SS G_CDS: 0.94 Total: 10.14 kcal Atomic # 6 Polarization: -26.98 SS G_CDS: 4.29 Total: -22.69 kcal Atomic # 7 Polarization: -72.98 SS G_CDS: -2.92 Total: -75.90 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.09 Total: -20.67 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.42 3.24 -62.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338996728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.398 kcal (2) G-P(sol) polarization free energy of solvation -65.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds