Wall clock time and date at job start Mon Mar 30 2020 07:41:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47286 * 2 1 4 4 H 1.09007 * 108.83035 * 53.50279 * 3 2 1 5 5 C 1.54175 * 108.85417 * 294.99877 * 3 2 1 6 6 C 1.53819 * 111.96746 * 197.77987 * 5 3 2 7 7 C 1.50814 * 111.62358 * 319.04432 * 6 5 3 8 8 N 1.47636 * 108.04378 * 95.06090 * 7 6 5 9 9 C 1.46894 * 110.99896 * 150.32265 * 8 7 6 10 10 C 1.52995 * 109.47182 * 204.72072 * 9 8 7 11 11 O 1.42903 * 109.46960 * 63.79406 * 10 9 8 12 12 C 1.42905 * 114.00370 * 179.97438 * 11 10 9 13 13 C 1.50690 * 109.47339 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00187 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00155 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99947 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00194 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47063 * 90.00322 * 17 15 13 19 19 H 1.48498 * 109.47374 * 210.00463 * 17 15 13 20 20 H 1.48504 * 109.47076 * 330.00684 * 17 15 13 21 21 C 1.39779 * 114.76586 * 277.18645 * 8 7 6 22 22 C 1.50812 * 108.80367 * 172.02354 * 3 2 1 23 23 H 1.09005 * 109.46589 * 59.99872 * 1 2 3 24 24 H 1.09003 * 109.47534 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47216 * 300.00262 * 1 2 3 26 26 H 1.09003 * 109.47167 * 239.99973 * 2 1 3 27 27 H 1.09005 * 109.46589 * 120.00128 * 2 1 3 28 28 H 1.08995 * 108.98042 * 77.14509 * 5 3 2 29 29 H 1.09000 * 108.97982 * 318.42076 * 5 3 2 30 30 H 1.08997 * 109.05208 * 198.48941 * 6 5 3 31 31 H 1.09008 * 109.05069 * 79.59793 * 6 5 3 32 32 H 1.09002 * 109.74878 * 335.42672 * 7 6 5 33 33 H 1.09001 * 109.74837 * 214.69938 * 7 6 5 34 34 H 1.08998 * 109.47568 * 324.72878 * 9 8 7 35 35 H 1.09002 * 109.47000 * 84.72713 * 9 8 7 36 36 H 1.09000 * 109.47328 * 183.78621 * 10 9 8 37 37 H 1.08998 * 109.47541 * 303.79568 * 10 9 8 38 38 H 1.08994 * 109.47047 * 300.00599 * 12 11 10 39 39 H 1.09002 * 109.46771 * 60.00092 * 12 11 10 40 40 H 0.96995 * 120.00152 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.01851 * 182.86740 * 21 8 7 42 42 H 1.08999 * 109.01861 * 301.76110 * 21 8 7 43 43 H 1.08994 * 109.61690 * 93.94590 * 22 3 2 44 44 H 1.08997 * 109.49983 * 333.65888 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5787 1.9787 0.8294 5 6 1.6248 2.1177 -1.3223 6 6 2.4455 3.3883 -1.6021 7 6 2.6542 4.2020 -0.3496 8 7 3.9612 3.8280 0.2262 9 6 4.5576 4.9555 0.9546 10 6 6.0776 4.7867 0.9999 11 8 6.6028 4.8428 -0.3279 12 6 8.0225 4.6953 -0.3981 13 6 8.4646 4.7691 -1.8368 14 1 7.7346 4.9146 -2.6194 15 6 9.8013 4.6520 -2.1542 16 7 10.6903 4.4754 -1.2013 17 14 10.3494 4.7443 -3.9375 18 1 10.6442 6.1559 -4.2924 19 1 11.5718 3.9216 -4.1229 20 1 9.2680 4.2288 -4.8151 21 6 3.9449 2.6742 1.0151 22 6 3.5350 1.4294 0.1981 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 0.5688 2.3824 -1.2689 29 1 1.7713 1.4135 -2.1413 30 1 1.9197 3.9965 -2.3381 31 1 3.4165 3.1027 -2.0069 32 1 1.8611 3.9862 0.3663 33 1 2.6504 5.2639 -0.5954 34 1 4.3105 5.8878 0.4467 35 1 4.1644 4.9803 1.9710 36 1 6.5144 5.5869 1.5974 37 1 6.3231 3.8236 1.4474 38 1 8.4993 5.4937 0.1704 39 1 8.3087 3.7304 0.0204 40 1 11.6306 4.3927 -1.4245 41 1 4.9395 2.5144 1.4313 42 1 3.2364 2.8124 1.8318 43 1 4.0328 1.4495 -0.7713 44 1 3.8226 0.5276 0.7386 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338997362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:32 Heat of formation + Delta-G solvation = -64.608743 kcal Electronic energy + Delta-G solvation = -19778.138782 eV Core-core repulsion = 16922.692692 eV Total energy + Delta-G solvation = -2855.446090 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.61601 -36.87590 -35.57916 -32.82233 -32.46345 -31.14625 -29.00069 -26.82133 -25.56310 -25.10893 -22.24462 -22.11203 -21.66847 -20.33278 -19.03407 -16.36141 -16.17415 -15.61629 -15.33271 -15.09659 -14.74286 -14.32692 -14.21937 -13.74036 -13.62917 -13.22924 -13.02527 -12.63486 -12.31505 -12.02870 -11.91141 -11.69770 -11.40689 -11.29842 -11.11869 -11.03421 -10.79712 -10.73855 -10.51007 -10.29464 -10.27212 -10.14141 -10.07721 -9.88128 -9.00361 -8.71283 -8.04896 -7.82004 -6.03904 -4.04483 3.34759 3.39449 3.45573 4.13288 4.41545 4.65334 4.74548 4.82624 4.94947 5.13422 5.19302 5.25578 5.29671 5.32545 5.37745 5.51834 5.55011 5.62758 5.66230 5.73278 5.79544 5.85054 5.88432 5.92705 5.97264 6.04831 6.08268 6.17043 6.22534 6.26019 6.27791 6.33136 6.38936 6.52673 6.66249 7.20120 7.43726 7.53084 7.75556 7.88316 8.25547 8.72003 9.10968 9.60163 11.07887 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.004289 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.432775 B = 6527.484203 C = 6904.518301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.087 4.087 4 H 0.061 0.939 5 C -0.109 4.109 6 C -0.121 4.121 7 C 0.071 3.929 8 N -0.541 5.541 9 C 0.066 3.934 10 C 0.067 3.933 11 O -0.379 6.379 12 C 0.194 3.806 13 C -0.508 4.508 14 H 0.066 0.934 15 C 0.054 3.946 16 N -0.901 5.901 17 Si 0.906 3.094 18 H -0.279 1.279 19 H -0.286 1.286 20 H -0.271 1.271 21 C 0.078 3.922 22 C -0.115 4.115 23 H 0.055 0.945 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.034 0.966 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.038 0.962 36 H 0.036 0.964 37 H 0.034 0.966 38 H 0.001 0.999 39 H 0.002 0.998 40 H 0.263 0.737 41 H 0.071 0.929 42 H 0.010 0.990 43 H 0.079 0.921 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.246 -5.437 4.610 20.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.105 4.105 4 H 0.080 0.920 5 C -0.147 4.147 6 C -0.159 4.159 7 C -0.056 4.056 8 N -0.265 5.265 9 C -0.061 4.061 10 C -0.011 4.011 11 O -0.298 6.298 12 C 0.120 3.880 13 C -0.547 4.547 14 H 0.084 0.916 15 C -0.146 4.146 16 N -0.541 5.541 17 Si 0.734 3.266 18 H -0.205 1.205 19 H -0.212 1.212 20 H -0.196 1.196 21 C -0.051 4.051 22 C -0.153 4.153 23 H 0.074 0.926 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.052 0.948 38 H 0.019 0.981 39 H 0.020 0.980 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.098 0.902 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -18.898 -5.554 4.106 20.121 hybrid contribution 0.167 0.129 0.128 0.246 sum -18.732 -5.425 4.234 19.956 Atomic orbital electron populations 1.21815 0.96292 1.01168 1.01722 1.21725 0.95571 0.96713 1.01857 1.21093 0.96110 0.95357 0.97939 0.92033 1.21981 0.98879 0.96980 0.96815 1.21444 1.01524 0.95655 0.97317 1.21785 0.88688 0.99109 0.95974 1.58548 1.23992 1.03973 1.39977 1.22142 0.94441 0.93859 0.95666 1.22261 0.92503 0.98620 0.87710 1.87936 1.24792 1.93834 1.23275 1.20153 0.75356 0.94860 0.97636 1.21069 0.92322 1.49119 0.92161 0.91564 1.24947 0.96234 0.95328 0.98100 1.69968 1.01804 1.50096 1.32196 0.86360 0.78047 0.78009 0.84208 1.20550 1.21165 1.19617 1.20953 1.00431 0.90427 0.93316 1.21583 0.94982 0.96886 1.01823 0.92602 0.93175 0.93058 0.91985 0.92210 0.92832 0.92306 0.92326 0.89850 0.94797 0.91192 0.90407 0.94392 0.94587 0.94769 0.98147 0.98000 0.92788 0.91038 0.97246 0.90233 0.91719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.69 37.16 0.36 -0.89 16 2 C -0.12 -1.12 5.18 -26.73 -0.14 -1.26 16 3 C -0.09 -0.92 1.69 -91.10 -0.15 -1.07 16 4 H 0.06 0.67 6.57 -51.92 -0.34 0.33 16 5 C -0.11 -1.16 4.57 -25.69 -0.12 -1.28 16 6 C -0.12 -1.52 5.41 -27.40 -0.15 -1.66 16 7 C 0.07 0.92 5.37 -4.52 -0.02 0.90 16 8 N -0.54 -8.30 3.81 -240.00 -0.91 -9.22 16 9 C 0.07 1.03 5.42 -3.83 -0.02 1.01 16 10 C 0.07 1.29 6.10 37.16 0.23 1.52 16 11 O -0.38 -9.46 10.26 -35.23 -0.36 -9.82 16 12 C 0.19 5.50 5.69 36.00 0.20 5.70 16 13 C -0.51 -15.36 9.43 -34.44 -0.32 -15.68 16 14 H 0.07 2.00 7.81 -52.48 -0.41 1.59 16 15 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.51 13.29 55.43 0.74 -26.77 16 17 Si 0.91 22.28 29.54 -169.99 -5.02 17.26 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.08 1.09 4.76 -6.74 -0.03 1.06 16 22 C -0.11 -1.44 5.16 -27.08 -0.14 -1.58 16 23 H 0.05 0.45 6.93 -51.93 -0.36 0.09 16 24 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.59 8.01 -51.93 -0.42 0.17 16 27 H 0.06 0.54 7.86 -51.93 -0.41 0.13 16 28 H 0.05 0.51 7.42 -51.93 -0.39 0.13 16 29 H 0.06 0.62 7.89 -51.93 -0.41 0.21 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.08 1.27 7.26 -51.92 -0.38 0.90 16 32 H 0.03 0.40 6.66 -51.93 -0.35 0.06 16 33 H 0.07 0.89 7.38 -51.93 -0.38 0.50 16 34 H 0.08 1.19 7.41 -51.93 -0.38 0.81 16 35 H 0.04 0.50 7.98 -51.93 -0.41 0.09 16 36 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.03 0.65 6.62 -51.93 -0.34 0.31 16 38 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 39 H 0.00 0.06 8.14 -51.93 -0.42 -0.36 16 40 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.07 1.08 6.39 -51.93 -0.33 0.75 16 42 H 0.01 0.12 7.54 -51.93 -0.39 -0.27 16 43 H 0.08 1.16 7.10 -51.93 -0.37 0.79 16 44 H 0.06 0.74 7.54 -51.93 -0.39 0.35 16 LS Contribution 333.68 15.07 5.03 5.03 Total: -1.00 -31.39 333.68 -9.07 -40.46 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -8.13 Total: -5.21 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: -0.41 Total: -11.73 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.18 Total: -35.99 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: -0.36 Total: -9.82 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -31.39 -9.07 -40.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338997362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.150 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds