Wall clock time and date at job start Mon Mar 30 2020 07:41:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47286 * 2 1 4 4 H 1.09007 * 108.83035 * 53.50279 * 3 2 1 5 5 C 1.54175 * 108.85417 * 294.99877 * 3 2 1 6 6 C 1.53819 * 111.96746 * 197.77987 * 5 3 2 7 7 C 1.50814 * 111.62358 * 319.04432 * 6 5 3 8 8 N 1.47636 * 108.04378 * 95.06090 * 7 6 5 9 9 C 1.46894 * 110.99896 * 150.32265 * 8 7 6 10 10 C 1.52995 * 109.47182 * 204.72072 * 9 8 7 11 11 O 1.42903 * 109.46960 * 63.79406 * 10 9 8 12 12 C 1.42905 * 114.00370 * 179.97438 * 11 10 9 13 13 C 1.50690 * 109.47339 * 179.97438 * 12 11 10 14 14 H 1.08005 * 120.00187 * 0.02562 * 13 12 11 15 15 C 1.37878 * 120.00155 * 179.97438 * 13 12 11 16 16 N 1.31516 * 119.99947 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 120.00194 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47063 * 90.00322 * 17 15 13 19 19 H 1.48498 * 109.47374 * 210.00463 * 17 15 13 20 20 H 1.48504 * 109.47076 * 330.00684 * 17 15 13 21 21 C 1.39779 * 114.76586 * 277.18645 * 8 7 6 22 22 C 1.50812 * 108.80367 * 172.02354 * 3 2 1 23 23 H 1.09005 * 109.46589 * 59.99872 * 1 2 3 24 24 H 1.09003 * 109.47534 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47216 * 300.00262 * 1 2 3 26 26 H 1.09003 * 109.47167 * 239.99973 * 2 1 3 27 27 H 1.09005 * 109.46589 * 120.00128 * 2 1 3 28 28 H 1.08995 * 108.98042 * 77.14509 * 5 3 2 29 29 H 1.09000 * 108.97982 * 318.42076 * 5 3 2 30 30 H 1.08997 * 109.05208 * 198.48941 * 6 5 3 31 31 H 1.09008 * 109.05069 * 79.59793 * 6 5 3 32 32 H 1.09002 * 109.74878 * 335.42672 * 7 6 5 33 33 H 1.09001 * 109.74837 * 214.69938 * 7 6 5 34 34 H 1.08998 * 109.47568 * 324.72878 * 9 8 7 35 35 H 1.09002 * 109.47000 * 84.72713 * 9 8 7 36 36 H 1.09000 * 109.47328 * 183.78621 * 10 9 8 37 37 H 1.08998 * 109.47541 * 303.79568 * 10 9 8 38 38 H 1.08994 * 109.47047 * 300.00599 * 12 11 10 39 39 H 1.09002 * 109.46771 * 60.00092 * 12 11 10 40 40 H 0.96995 * 120.00152 * 179.97438 * 16 15 13 41 41 H 1.08998 * 109.01851 * 182.86740 * 21 8 7 42 42 H 1.08999 * 109.01861 * 301.76110 * 21 8 7 43 43 H 1.08994 * 109.61690 * 93.94590 * 22 3 2 44 44 H 1.08997 * 109.49983 * 333.65888 * 22 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5787 1.9787 0.8294 5 6 1.6248 2.1177 -1.3223 6 6 2.4455 3.3883 -1.6021 7 6 2.6542 4.2020 -0.3496 8 7 3.9612 3.8280 0.2262 9 6 4.5576 4.9555 0.9546 10 6 6.0776 4.7867 0.9999 11 8 6.6028 4.8428 -0.3279 12 6 8.0225 4.6953 -0.3981 13 6 8.4646 4.7691 -1.8368 14 1 7.7346 4.9146 -2.6194 15 6 9.8013 4.6520 -2.1542 16 7 10.6903 4.4754 -1.2013 17 14 10.3494 4.7443 -3.9375 18 1 10.6442 6.1559 -4.2924 19 1 11.5718 3.9216 -4.1229 20 1 9.2680 4.2288 -4.8151 21 6 3.9449 2.6742 1.0151 22 6 3.5350 1.4294 0.1981 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8932 -0.5139 0.8900 28 1 0.5688 2.3824 -1.2689 29 1 1.7713 1.4135 -2.1413 30 1 1.9197 3.9965 -2.3381 31 1 3.4165 3.1027 -2.0069 32 1 1.8611 3.9862 0.3663 33 1 2.6504 5.2639 -0.5954 34 1 4.3105 5.8878 0.4467 35 1 4.1644 4.9803 1.9710 36 1 6.5144 5.5869 1.5974 37 1 6.3231 3.8236 1.4474 38 1 8.4993 5.4937 0.1704 39 1 8.3087 3.7304 0.0204 40 1 11.6306 4.3927 -1.4245 41 1 4.9395 2.5144 1.4313 42 1 3.2364 2.8124 1.8318 43 1 4.0328 1.4495 -0.7713 44 1 3.8226 0.5276 0.7386 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338997362.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:31 Heat of formation + Delta-G solvation = -83.598706 kcal Electronic energy + Delta-G solvation = -19778.962249 eV Core-core repulsion = 16922.692692 eV Total energy + Delta-G solvation = -2856.269557 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.68683 -38.52570 -36.83043 -34.89728 -33.62383 -32.18210 -30.44457 -28.81740 -26.49390 -26.26330 -24.46269 -23.14760 -22.75841 -21.50430 -19.94515 -18.61312 -17.52320 -17.30693 -16.61830 -16.23129 -16.07785 -15.95619 -15.63576 -14.92060 -14.80919 -14.55309 -14.14431 -13.87421 -13.54289 -13.47076 -13.14761 -12.93877 -12.81002 -12.72832 -12.58885 -12.33365 -12.28099 -12.08910 -11.97398 -11.66423 -11.44364 -11.22107 -11.15867 -11.08172 -10.99194 -10.83438 -10.15427 -8.95497 -8.30897 -6.42847 1.39573 1.42881 1.55108 2.35874 2.99537 3.02560 3.27554 3.77750 3.89089 3.89977 4.13594 4.24263 4.29145 4.33131 4.39431 4.46237 4.53397 4.54773 4.62574 4.70488 4.72523 4.77776 4.79715 4.84003 4.94021 4.95990 5.06576 5.11900 5.15854 5.20385 5.24355 5.28837 5.30861 5.37882 5.48212 5.55428 5.56795 5.67228 5.99036 6.29436 6.57151 6.66408 6.88956 7.29535 8.81657 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.004289 C = 0.004054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.432775 B = 6527.484203 C = 6904.518301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C -0.081 4.081 4 H 0.066 0.934 5 C -0.104 4.104 6 C -0.119 4.119 7 C 0.074 3.926 8 N -0.567 5.567 9 C 0.074 3.926 10 C 0.058 3.942 11 O -0.393 6.393 12 C 0.210 3.790 13 C -0.544 4.544 14 H 0.059 0.941 15 C 0.005 3.995 16 N -0.932 5.932 17 Si 0.983 3.017 18 H -0.266 1.266 19 H -0.273 1.273 20 H -0.265 1.265 21 C 0.079 3.921 22 C -0.111 4.111 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.047 0.953 32 H 0.053 0.947 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.070 0.930 36 H 0.045 0.955 37 H 0.032 0.968 38 H -0.017 1.017 39 H -0.021 1.021 40 H 0.270 0.730 41 H 0.051 0.949 42 H 0.028 0.972 43 H 0.051 0.949 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.809 -5.518 4.144 21.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.157 4.157 3 C -0.099 4.099 4 H 0.085 0.915 5 C -0.142 4.142 6 C -0.157 4.157 7 C -0.052 4.052 8 N -0.292 5.292 9 C -0.053 4.053 10 C -0.020 4.020 11 O -0.313 6.313 12 C 0.135 3.865 13 C -0.582 4.582 14 H 0.078 0.922 15 C -0.193 4.193 16 N -0.572 5.572 17 Si 0.806 3.194 18 H -0.191 1.191 19 H -0.198 1.198 20 H -0.190 1.190 21 C -0.051 4.051 22 C -0.149 4.149 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.071 0.929 33 H 0.090 0.910 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.063 0.937 37 H 0.051 0.949 38 H 0.000 1.000 39 H -0.003 1.003 40 H 0.079 0.921 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.070 0.930 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -20.484 -5.635 3.659 21.558 hybrid contribution 0.647 0.145 0.354 0.751 sum -19.837 -5.490 4.012 20.970 Atomic orbital electron populations 1.21791 0.95089 1.01834 1.02008 1.21691 0.96572 0.95571 1.01819 1.21026 0.94422 0.96457 0.98029 0.91549 1.21947 0.99477 0.95963 0.96765 1.21412 1.00140 0.96776 0.97418 1.21818 0.87930 0.99246 0.96241 1.58492 1.25720 1.04289 1.40679 1.22061 0.91470 0.94107 0.97631 1.22624 0.95238 0.98893 0.85235 1.87894 1.22666 1.93817 1.26922 1.19761 0.77238 0.92797 0.96695 1.21372 0.93151 1.50862 0.92800 0.92226 1.25972 0.95875 0.93975 1.03471 1.70075 1.02446 1.49851 1.34797 0.85185 0.77834 0.78766 0.77630 1.19139 1.19843 1.18978 1.20947 0.99797 0.90478 0.93845 1.21551 0.96428 0.96715 1.00219 0.92400 0.92404 0.92642 0.92427 0.91932 0.90945 0.92490 0.91160 0.93380 0.92917 0.91017 0.90187 0.91202 0.93720 0.94940 0.99965 1.00340 0.92084 0.93069 0.95447 0.92979 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.69 71.98 0.70 -1.37 16 2 C -0.12 -1.99 5.18 30.59 0.16 -1.84 16 3 C -0.08 -1.59 1.69 -11.11 -0.02 -1.61 16 4 H 0.07 1.27 6.57 -2.38 -0.02 1.25 16 5 C -0.10 -2.05 4.57 31.27 0.14 -1.90 16 6 C -0.12 -2.90 5.41 30.16 0.16 -2.73 16 7 C 0.07 1.80 5.37 85.45 0.46 2.26 16 8 N -0.57 -17.15 3.81 -913.24 -3.48 -20.62 16 9 C 0.07 2.25 5.42 86.30 0.47 2.71 16 10 C 0.06 2.25 6.10 71.98 0.44 2.69 16 11 O -0.39 -20.28 10.26 -148.98 -1.53 -21.80 16 12 C 0.21 12.39 5.69 71.23 0.41 12.80 16 13 C -0.54 -33.69 9.43 25.60 0.24 -33.45 16 14 H 0.06 3.67 7.81 -2.91 -0.02 3.65 16 15 C 0.01 0.31 5.46 84.65 0.46 0.77 16 16 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 17 Si 0.98 45.60 29.54 68.60 2.03 47.63 16 18 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 19 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 20 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 21 C 0.08 2.15 4.76 88.07 0.42 2.57 16 22 C -0.11 -2.77 5.16 30.37 0.16 -2.61 16 23 H 0.06 0.78 6.93 -2.38 -0.02 0.76 16 24 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 1.01 8.01 -2.39 -0.02 1.00 16 27 H 0.06 1.02 7.86 -2.38 -0.02 1.00 16 28 H 0.07 1.18 7.42 -2.39 -0.02 1.16 16 29 H 0.06 1.14 7.89 -2.39 -0.02 1.13 16 30 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.51 7.26 -2.38 -0.02 1.49 16 32 H 0.05 1.10 6.66 -2.39 -0.02 1.08 16 33 H 0.07 1.71 7.38 -2.39 -0.02 1.69 16 34 H 0.08 2.37 7.41 -2.39 -0.02 2.35 16 35 H 0.07 1.69 7.98 -2.39 -0.02 1.67 16 36 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 37 H 0.03 1.27 6.62 -2.39 -0.02 1.26 16 38 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 39 H -0.02 -1.31 8.14 -2.39 -0.02 -1.33 16 40 H 0.27 15.41 8.31 -92.71 -0.77 14.63 16 41 H 0.05 1.57 6.39 -2.39 -0.02 1.56 16 42 H 0.03 0.65 7.54 -2.39 -0.02 0.64 16 43 H 0.05 1.58 7.10 -2.39 -0.02 1.56 16 44 H 0.07 1.65 7.54 -2.39 -0.02 1.63 16 Total: -1.00 -68.25 333.68 2.43 -65.81 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: 0.93 Total: 7.95 kcal Atomic # 6 Polarization: -25.92 SS G_CDS: 4.19 Total: -21.72 kcal Atomic # 7 Polarization: -74.68 SS G_CDS: -3.19 Total: -77.87 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -1.53 Total: -21.80 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -68.25 2.43 -65.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338997362.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.784 kcal (2) G-P(sol) polarization free energy of solvation -68.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds