Wall clock time and date at job start Mon Mar 30 2020 07:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46619 * 2 1 4 4 H 1.08996 * 109.57489 * 305.25144 * 3 2 1 5 5 C 1.50461 * 109.67697 * 65.56790 * 3 2 1 6 6 C 1.54287 * 113.03477 * 212.02364 * 5 3 2 7 7 C 1.54073 * 112.28755 * 318.30494 * 6 5 3 8 8 N 1.44266 * 111.98005 * 318.91051 * 7 6 5 9 9 C 1.46903 * 110.99950 * 219.30873 * 8 7 6 10 10 C 1.52999 * 109.47246 * 301.07068 * 9 8 7 11 11 O 1.42906 * 109.46557 * 66.97044 * 10 9 8 12 12 C 1.42902 * 113.99490 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47060 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99557 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00174 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99722 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99857 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47165 * 90.00080 * 17 15 13 19 19 H 1.48494 * 109.46898 * 209.99935 * 17 15 13 20 20 H 1.48497 * 109.47223 * 330.00062 * 17 15 13 21 21 C 1.47803 * 109.46098 * 96.43783 * 8 7 6 22 22 C 1.45861 * 112.91862 * 276.73670 * 21 8 7 23 23 H 1.08996 * 109.47202 * 299.99625 * 1 2 3 24 24 H 1.08997 * 109.46811 * 60.00577 * 1 2 3 25 25 H 1.09004 * 109.46415 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47202 * 240.00375 * 2 1 3 27 27 H 1.09002 * 109.46572 * 119.99830 * 2 1 3 28 28 H 1.09005 * 108.77203 * 332.94257 * 5 3 2 29 29 H 1.09006 * 108.77217 * 91.22096 * 5 3 2 30 30 H 1.09002 * 108.92033 * 79.02303 * 6 5 3 31 31 H 1.08999 * 108.92311 * 197.67314 * 6 5 3 32 32 H 1.08999 * 108.97826 * 198.27088 * 7 6 5 33 33 H 1.08994 * 108.97624 * 79.55634 * 7 6 5 34 34 H 1.09005 * 109.47050 * 181.07105 * 9 8 7 35 35 H 1.08999 * 109.46891 * 61.07629 * 9 8 7 36 36 H 1.09001 * 109.47233 * 306.97241 * 10 9 8 37 37 H 1.08996 * 109.47081 * 186.96943 * 10 9 8 38 38 H 1.09008 * 109.47029 * 299.99782 * 12 11 10 39 39 H 1.09001 * 109.47162 * 59.99882 * 12 11 10 40 40 H 0.97006 * 119.99751 * 180.02562 * 16 15 13 41 41 H 1.09001 * 108.79836 * 37.62596 * 21 8 7 42 42 H 1.09000 * 108.79478 * 155.96536 * 21 8 7 43 43 H 1.09004 * 109.05763 * 181.87186 * 22 21 8 44 44 H 1.09001 * 109.05986 * 300.85868 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6028 1.9844 -0.8386 5 6 1.6563 2.1155 1.2899 6 6 1.3919 3.6268 1.1270 7 6 2.4231 4.3043 0.2042 8 7 3.7611 3.8208 0.4430 9 6 4.7379 4.9153 0.3661 10 6 4.6675 5.5657 -1.0169 11 8 3.4086 6.2245 -1.1698 12 6 3.2391 6.8678 -2.4345 13 6 1.8847 7.5268 -2.4854 14 1 1.2198 7.4605 -1.6370 15 6 1.4946 8.2142 -3.6151 16 7 0.3124 8.7888 -3.6596 17 14 2.6451 8.3294 -5.0823 18 1 2.3985 7.1848 -5.9958 19 1 2.3983 9.6023 -5.8061 20 1 4.0529 8.2926 -4.6115 21 6 4.0811 2.7560 -0.5310 22 6 3.5798 1.4472 -0.1268 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.7548 1.6416 1.6782 29 1 2.4624 1.9779 2.0106 30 1 0.3958 3.7681 0.7075 31 1 1.4324 4.1005 2.1078 32 1 2.3992 5.3805 0.3758 33 1 2.1543 4.1062 -0.8333 34 1 5.7403 4.5200 0.5311 35 1 4.5107 5.6593 1.1296 36 1 4.7719 4.7991 -1.7847 37 1 5.4729 6.2931 -1.1178 38 1 4.0150 7.6223 -2.5653 39 1 3.3138 6.1279 -3.2314 40 1 0.0378 9.2722 -4.4546 41 1 3.6428 3.0178 -1.4941 42 1 5.1636 2.6963 -0.6430 43 1 3.8780 0.7071 -0.8694 44 1 4.0160 1.1809 0.8360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338997364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:34 Heat of formation + Delta-G solvation = -60.641624 kcal Electronic energy + Delta-G solvation = -20278.721175 eV Core-core repulsion = 17423.447112 eV Total energy + Delta-G solvation = -2855.274063 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.56574 -37.20969 -35.39581 -32.69420 -32.26929 -31.55437 -28.96663 -27.54276 -25.47294 -24.91981 -22.36438 -22.00293 -21.64722 -19.90601 -18.96446 -16.87486 -16.14549 -15.81456 -15.31050 -15.03933 -14.47256 -14.30978 -14.25273 -13.89622 -13.64461 -13.11795 -12.79002 -12.63890 -12.40706 -12.28301 -11.79827 -11.66228 -11.61563 -11.23246 -11.05308 -10.95663 -10.81397 -10.71667 -10.59322 -10.29685 -10.24274 -10.04534 -9.91366 -9.74587 -9.19932 -8.89617 -8.52226 -7.90874 -6.14997 -4.14149 3.21209 3.28639 3.29790 4.19373 4.32098 4.62985 4.71053 4.92571 4.99322 5.16469 5.30148 5.33455 5.39610 5.49189 5.54771 5.57151 5.60123 5.69731 5.78898 5.80490 5.83635 5.88812 5.91268 6.01536 6.04488 6.11672 6.19650 6.27007 6.33063 6.40270 6.45794 6.50840 6.54786 6.66025 6.69935 6.83361 6.95237 7.44033 7.53247 7.56784 7.95677 8.61223 8.95775 9.44422 10.97897 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.005331 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.326299 B = 5251.460503 C = 5755.721014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.086 4.086 4 H 0.070 0.930 5 C -0.104 4.104 6 C -0.110 4.110 7 C 0.057 3.943 8 N -0.523 5.523 9 C 0.060 3.940 10 C 0.020 3.980 11 O -0.374 6.374 12 C 0.167 3.833 13 C -0.518 4.518 14 H 0.082 0.918 15 C 0.073 3.927 16 N -0.894 5.894 17 Si 0.875 3.125 18 H -0.274 1.274 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.051 3.949 22 C -0.105 4.105 23 H 0.058 0.942 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.057 0.943 27 H 0.058 0.942 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.045 0.955 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.001 0.999 39 H -0.005 1.005 40 H 0.266 0.734 41 H 0.038 0.962 42 H 0.059 0.941 43 H 0.059 0.941 44 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.594 -15.514 7.589 18.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.105 4.105 4 H 0.088 0.912 5 C -0.142 4.142 6 C -0.148 4.148 7 C -0.072 4.072 8 N -0.246 5.246 9 C -0.068 4.068 10 C -0.060 4.060 11 O -0.293 6.293 12 C 0.092 3.908 13 C -0.555 4.555 14 H 0.100 0.900 15 C -0.129 4.129 16 N -0.532 5.532 17 Si 0.701 3.299 18 H -0.200 1.200 19 H -0.207 1.207 20 H -0.192 1.192 21 C -0.077 4.077 22 C -0.143 4.143 23 H 0.077 0.923 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.079 0.921 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.108 0.892 33 H 0.064 0.936 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.019 0.981 39 H 0.013 0.987 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.342 -15.592 8.101 18.680 hybrid contribution 0.740 0.557 -2.057 2.256 sum 7.082 -15.035 6.044 17.684 Atomic orbital electron populations 1.21851 0.96099 1.01043 1.02232 1.21574 0.95742 0.96707 1.01368 1.20977 0.95094 0.95225 0.99161 0.91208 1.21305 1.00680 0.95162 0.97028 1.21976 0.98244 0.94805 0.99813 1.21998 0.86954 1.00240 0.97966 1.61809 1.03104 1.10011 1.49639 1.22384 0.95932 0.92887 0.95628 1.23123 0.88771 0.95987 0.98083 1.87993 1.32642 1.70727 1.37954 1.20601 0.97820 0.91029 0.81359 1.20863 0.99208 1.32532 1.02940 0.89950 1.24758 0.95111 0.94905 0.98094 1.69874 1.19188 1.34910 1.29277 0.86872 0.81755 0.78054 0.83189 1.19996 1.20729 1.19213 1.21010 0.99752 0.92728 0.94201 1.20621 0.95586 0.96428 1.01696 0.92327 0.92675 0.93263 0.92430 0.92351 0.92930 0.92097 0.92480 0.92636 0.89206 0.93624 0.90283 0.89922 0.94455 0.94193 0.98115 0.98746 0.92357 0.94349 0.92248 0.92257 0.91687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.72 37.16 0.36 -1.18 16 2 C -0.12 -1.18 5.32 -26.73 -0.14 -1.33 16 3 C -0.09 -1.03 1.86 -91.09 -0.17 -1.20 16 4 H 0.07 0.98 7.15 -51.93 -0.37 0.61 16 5 C -0.10 -1.30 4.87 -27.33 -0.13 -1.43 16 6 C -0.11 -1.61 6.14 -25.50 -0.16 -1.76 16 7 C 0.06 0.96 3.61 -4.67 -0.02 0.94 16 8 N -0.52 -7.71 4.45 -239.55 -1.07 -8.77 16 9 C 0.06 0.87 5.66 -3.82 -0.02 0.84 16 10 C 0.02 0.34 5.82 37.16 0.22 0.55 16 11 O -0.37 -8.35 7.01 -35.23 -0.25 -8.60 16 12 C 0.17 4.21 4.76 36.01 0.17 4.38 16 13 C -0.52 -15.20 9.99 -34.44 -0.34 -15.54 16 14 H 0.08 2.64 8.06 -52.49 -0.42 2.21 16 15 C 0.07 2.14 5.47 -17.82 -0.10 2.05 16 16 N -0.89 -27.46 13.96 55.43 0.77 -26.69 16 17 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 21 C 0.05 0.68 3.88 -6.71 -0.03 0.65 16 22 C -0.11 -1.22 4.92 -29.32 -0.14 -1.37 16 23 H 0.06 0.58 6.28 -51.93 -0.33 0.26 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.56 8.06 -51.93 -0.42 0.14 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.05 0.61 5.79 -51.93 -0.30 0.30 16 29 H 0.06 0.77 7.38 -51.93 -0.38 0.39 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.77 5.85 -51.93 -0.30 1.46 16 33 H 0.05 0.87 6.33 -51.93 -0.33 0.55 16 34 H 0.08 0.94 7.97 -51.93 -0.41 0.53 16 35 H 0.08 1.22 8.08 -51.93 -0.42 0.80 16 36 H 0.04 0.63 6.75 -51.93 -0.35 0.28 16 37 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 38 H 0.00 0.03 7.20 -51.92 -0.37 -0.34 16 39 H -0.01 -0.13 7.57 -51.93 -0.39 -0.52 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.04 0.59 6.72 -51.93 -0.35 0.24 16 42 H 0.06 0.72 7.69 -51.93 -0.40 0.32 16 43 H 0.06 0.62 7.96 -51.93 -0.41 0.20 16 44 H 0.06 0.74 7.58 -51.93 -0.39 0.34 16 LS Contribution 325.25 15.07 4.90 4.90 Total: -1.00 -30.04 325.25 -8.88 -38.92 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -8.07 Total: -2.13 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.50 Total: -14.40 kcal Atomic # 7 Polarization: -35.17 SS G_CDS: -0.29 Total: -35.46 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.25 Total: -8.60 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.04 -8.88 -38.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338997364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.726 kcal (2) G-P(sol) polarization free energy of solvation -30.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds