Wall clock time and date at job start Mon Mar 30 2020 07:41:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53004 * 109.46619 * 2 1 4 4 H 1.08996 * 109.57489 * 305.25144 * 3 2 1 5 5 C 1.50461 * 109.67697 * 65.56790 * 3 2 1 6 6 C 1.54287 * 113.03477 * 212.02364 * 5 3 2 7 7 C 1.54073 * 112.28755 * 318.30494 * 6 5 3 8 8 N 1.44266 * 111.98005 * 318.91051 * 7 6 5 9 9 C 1.46903 * 110.99950 * 219.30873 * 8 7 6 10 10 C 1.52999 * 109.47246 * 301.07068 * 9 8 7 11 11 O 1.42906 * 109.46557 * 66.97044 * 10 9 8 12 12 C 1.42902 * 113.99490 * 180.02562 * 11 10 9 13 13 C 1.50703 * 109.47060 * 180.02562 * 12 11 10 14 14 H 1.07998 * 119.99557 * 359.97438 * 13 12 11 15 15 C 1.37875 * 120.00174 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99722 * 179.97438 * 15 13 12 17 17 Si 1.86804 * 119.99857 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.47165 * 90.00080 * 17 15 13 19 19 H 1.48494 * 109.46898 * 209.99935 * 17 15 13 20 20 H 1.48497 * 109.47223 * 330.00062 * 17 15 13 21 21 C 1.47803 * 109.46098 * 96.43783 * 8 7 6 22 22 C 1.45861 * 112.91862 * 276.73670 * 21 8 7 23 23 H 1.08996 * 109.47202 * 299.99625 * 1 2 3 24 24 H 1.08997 * 109.46811 * 60.00577 * 1 2 3 25 25 H 1.09004 * 109.46415 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47202 * 240.00375 * 2 1 3 27 27 H 1.09002 * 109.46572 * 119.99830 * 2 1 3 28 28 H 1.09005 * 108.77203 * 332.94257 * 5 3 2 29 29 H 1.09006 * 108.77217 * 91.22096 * 5 3 2 30 30 H 1.09002 * 108.92033 * 79.02303 * 6 5 3 31 31 H 1.08999 * 108.92311 * 197.67314 * 6 5 3 32 32 H 1.08999 * 108.97826 * 198.27088 * 7 6 5 33 33 H 1.08994 * 108.97624 * 79.55634 * 7 6 5 34 34 H 1.09005 * 109.47050 * 181.07105 * 9 8 7 35 35 H 1.08999 * 109.46891 * 61.07629 * 9 8 7 36 36 H 1.09001 * 109.47233 * 306.97241 * 10 9 8 37 37 H 1.08996 * 109.47081 * 186.96943 * 10 9 8 38 38 H 1.09008 * 109.47029 * 299.99782 * 12 11 10 39 39 H 1.09001 * 109.47162 * 59.99882 * 12 11 10 40 40 H 0.97006 * 119.99751 * 180.02562 * 16 15 13 41 41 H 1.09001 * 108.79836 * 37.62596 * 21 8 7 42 42 H 1.09000 * 108.79478 * 155.96536 * 21 8 7 43 43 H 1.09004 * 109.05763 * 181.87186 * 22 21 8 44 44 H 1.09001 * 109.05986 * 300.85868 * 22 21 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6028 1.9844 -0.8386 5 6 1.6563 2.1155 1.2899 6 6 1.3919 3.6268 1.1270 7 6 2.4231 4.3043 0.2042 8 7 3.7611 3.8208 0.4430 9 6 4.7379 4.9153 0.3661 10 6 4.6675 5.5657 -1.0169 11 8 3.4086 6.2245 -1.1698 12 6 3.2391 6.8678 -2.4345 13 6 1.8847 7.5268 -2.4854 14 1 1.2198 7.4605 -1.6370 15 6 1.4946 8.2142 -3.6151 16 7 0.3124 8.7888 -3.6596 17 14 2.6451 8.3294 -5.0823 18 1 2.3985 7.1848 -5.9958 19 1 2.3983 9.6023 -5.8061 20 1 4.0529 8.2926 -4.6115 21 6 4.0811 2.7560 -0.5310 22 6 3.5798 1.4472 -0.1268 23 1 -0.3633 0.5138 0.8900 24 1 -0.3633 0.5137 -0.8900 25 1 -0.3632 -1.0277 0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 0.7548 1.6416 1.6782 29 1 2.4624 1.9779 2.0106 30 1 0.3958 3.7681 0.7075 31 1 1.4324 4.1005 2.1078 32 1 2.3992 5.3805 0.3758 33 1 2.1543 4.1062 -0.8333 34 1 5.7403 4.5200 0.5311 35 1 4.5107 5.6593 1.1296 36 1 4.7719 4.7991 -1.7847 37 1 5.4729 6.2931 -1.1178 38 1 4.0150 7.6223 -2.5653 39 1 3.3138 6.1279 -3.2314 40 1 0.0378 9.2722 -4.4546 41 1 3.6428 3.0178 -1.4941 42 1 5.1636 2.6963 -0.6430 43 1 3.8780 0.7071 -0.8694 44 1 4.0160 1.1809 0.8360 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338997364.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:41:34 Heat of formation + Delta-G solvation = -79.548731 kcal Electronic energy + Delta-G solvation = -20279.541049 eV Core-core repulsion = 17423.447112 eV Total energy + Delta-G solvation = -2856.093936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75504 -38.68352 -36.67529 -34.86691 -33.43476 -32.63016 -30.58107 -29.22451 -26.56996 -26.12899 -24.04571 -23.56038 -22.70744 -21.01835 -20.14196 -19.03905 -17.61615 -17.29329 -16.66625 -16.41980 -16.15515 -15.57810 -15.27736 -15.18204 -14.93924 -14.65359 -14.41919 -13.92132 -13.65991 -13.57316 -13.10659 -13.00532 -12.86152 -12.61783 -12.54565 -12.41822 -12.18387 -11.89211 -11.81739 -11.74328 -11.52633 -11.31129 -11.26314 -11.07485 -10.95866 -10.84168 -10.38499 -9.19183 -8.41041 -6.48700 1.28124 1.30735 1.41537 2.24519 2.91268 2.93320 3.13852 3.74495 3.95783 4.00411 4.14090 4.20671 4.33128 4.39092 4.39512 4.43773 4.46080 4.52793 4.57181 4.63075 4.70428 4.80817 4.86578 4.91156 4.92138 4.98718 5.06559 5.09407 5.17288 5.22358 5.30703 5.32677 5.37083 5.42162 5.48130 5.50673 5.59977 5.68227 5.88362 6.23587 6.24135 6.54968 6.69003 7.15656 8.75923 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022141 B = 0.005331 C = 0.004864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.326299 B = 5251.460503 C = 5755.721014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.111 4.111 3 C -0.087 4.087 4 H 0.040 0.960 5 C -0.096 4.096 6 C -0.110 4.110 7 C 0.071 3.929 8 N -0.517 5.517 9 C 0.063 3.937 10 C 0.012 3.988 11 O -0.393 6.393 12 C 0.179 3.821 13 C -0.541 4.541 14 H 0.031 0.969 15 C 0.015 3.985 16 N -0.940 5.940 17 Si 0.952 3.048 18 H -0.262 1.262 19 H -0.271 1.271 20 H -0.248 1.248 21 C 0.051 3.949 22 C -0.103 4.103 23 H 0.056 0.944 24 H 0.040 0.960 25 H 0.064 0.936 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.013 0.987 34 H 0.118 0.882 35 H 0.076 0.924 36 H 0.043 0.957 37 H 0.055 0.945 38 H 0.009 0.991 39 H 0.001 0.999 40 H 0.273 0.727 41 H 0.013 0.987 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.184 -17.390 7.318 20.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.148 4.148 3 C -0.105 4.105 4 H 0.059 0.941 5 C -0.133 4.133 6 C -0.148 4.148 7 C -0.058 4.058 8 N -0.239 5.239 9 C -0.065 4.065 10 C -0.067 4.067 11 O -0.313 6.313 12 C 0.103 3.897 13 C -0.579 4.579 14 H 0.049 0.951 15 C -0.183 4.183 16 N -0.579 5.579 17 Si 0.774 3.226 18 H -0.186 1.186 19 H -0.196 1.196 20 H -0.172 1.172 21 C -0.076 4.076 22 C -0.140 4.140 23 H 0.075 0.925 24 H 0.059 0.941 25 H 0.083 0.917 26 H 0.083 0.917 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.085 0.915 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.031 0.969 34 H 0.136 0.864 35 H 0.094 0.906 36 H 0.062 0.938 37 H 0.073 0.927 38 H 0.026 0.974 39 H 0.019 0.981 40 H 0.082 0.918 41 H 0.031 0.969 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 8.941 -17.483 7.853 21.149 hybrid contribution -0.128 1.143 -1.880 2.205 sum 8.814 -16.340 5.973 19.502 Atomic orbital electron populations 1.21860 0.96218 1.01804 1.01459 1.21533 0.95613 0.95244 1.02411 1.20966 0.95720 0.96228 0.97619 0.94119 1.21249 1.01478 0.93083 0.97530 1.21952 0.96840 0.96829 0.99167 1.21751 0.89080 0.98372 0.96566 1.61901 1.01879 1.10311 1.49857 1.22511 0.97705 0.92672 0.93620 1.23459 0.86848 0.96264 1.00085 1.88006 1.35773 1.71058 1.36444 1.20275 0.95323 0.91160 0.82915 1.21105 1.00855 1.33983 1.01915 0.95066 1.25796 0.97011 0.93886 1.01624 1.70028 1.21491 1.35702 1.30729 0.85653 0.79798 0.78768 0.78395 1.18643 1.19608 1.17180 1.21097 1.01026 0.92907 0.92579 1.20615 0.94888 0.95695 1.02829 0.92525 0.94075 0.91717 0.91716 0.90866 0.91764 0.91470 0.93802 0.92244 0.92711 0.96871 0.86354 0.90566 0.93849 0.92727 0.97376 0.98100 0.91799 0.96894 0.89999 0.90489 0.90458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.72 71.98 0.70 -2.22 16 2 C -0.11 -2.02 5.32 30.60 0.16 -1.86 16 3 C -0.09 -2.00 1.86 -11.10 -0.02 -2.02 16 4 H 0.04 1.18 7.15 -2.39 -0.02 1.16 16 5 C -0.10 -2.30 4.87 30.21 0.15 -2.16 16 6 C -0.11 -3.32 6.14 31.39 0.19 -3.12 16 7 C 0.07 2.52 3.61 87.16 0.32 2.84 16 8 N -0.52 -14.79 4.45 -911.81 -4.06 -18.85 16 9 C 0.06 1.72 5.66 86.30 0.49 2.21 16 10 C 0.01 0.39 5.82 71.98 0.42 0.81 16 11 O -0.39 -18.03 7.01 -148.98 -1.04 -19.07 16 12 C 0.18 9.10 4.76 71.24 0.34 9.44 16 13 C -0.54 -33.17 9.99 25.60 0.26 -32.92 16 14 H 0.03 2.15 8.06 -2.91 -0.02 2.13 16 15 C 0.02 0.90 5.47 84.65 0.46 1.36 16 16 N -0.94 -59.56 13.96 21.45 0.30 -59.26 16 17 Si 0.95 43.96 27.47 68.60 1.88 45.84 16 18 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 20 H -0.25 -10.63 6.54 99.48 0.65 -9.98 16 21 C 0.05 1.28 3.88 83.94 0.33 1.61 16 22 C -0.10 -2.14 4.92 28.92 0.14 -1.99 16 23 H 0.06 1.07 6.28 -2.39 -0.01 1.05 16 24 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 26 H 0.06 1.10 8.06 -2.39 -0.02 1.09 16 27 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 28 H 0.06 1.40 5.79 -2.38 -0.01 1.38 16 29 H 0.07 1.55 7.38 -2.38 -0.02 1.54 16 30 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 31 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.05 2.31 5.85 -2.39 -0.01 2.29 16 33 H 0.01 0.54 6.33 -2.39 -0.02 0.52 16 34 H 0.12 2.36 7.97 -2.38 -0.02 2.34 16 35 H 0.08 2.19 8.08 -2.39 -0.02 2.17 16 36 H 0.04 1.41 6.75 -2.39 -0.02 1.39 16 37 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.01 0.42 7.20 -2.38 -0.02 0.40 16 39 H 0.00 0.06 7.57 -2.39 -0.02 0.05 16 40 H 0.27 15.86 8.31 -92.70 -0.77 15.09 16 41 H 0.01 0.39 6.72 -2.39 -0.02 0.37 16 42 H 0.08 1.70 7.69 -2.39 -0.02 1.68 16 43 H 0.08 1.36 7.96 -2.38 -0.02 1.34 16 44 H 0.08 1.47 7.58 -2.39 -0.02 1.46 16 Total: -1.00 -68.16 325.25 1.89 -66.27 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: 0.88 Total: 13.10 kcal Atomic # 6 Polarization: -31.96 SS G_CDS: 3.93 Total: -28.03 kcal Atomic # 7 Polarization: -74.35 SS G_CDS: -3.76 Total: -78.11 kcal Atomic # 8 Polarization: -18.03 SS G_CDS: -1.04 Total: -19.07 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 1.88 Total: 45.84 kcal Total: -68.16 1.89 -66.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338997364.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.278 kcal (2) G-P(sol) polarization free energy of solvation -68.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds