Wall clock time and date at job start Mon Mar 30 2020 07:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47462 * 2 1 4 4 H 1.08990 * 108.89161 * 58.50666 * 3 2 1 5 5 C 1.54065 * 108.97648 * 299.73941 * 3 2 1 6 6 C 1.54295 * 112.28585 * 198.26936 * 5 3 2 7 7 C 1.50464 * 113.03269 * 318.30506 * 6 5 3 8 8 C 1.54506 * 108.85224 * 92.15589 * 7 6 5 9 9 C 1.45862 * 111.59068 * 282.80627 * 8 7 6 10 10 N 1.44275 * 108.97618 * 177.27131 * 3 2 1 11 11 C 1.46902 * 111.00188 * 339.95088 * 10 3 2 12 12 C 1.52995 * 109.46760 * 169.74158 * 11 10 3 13 13 O 1.42901 * 109.47118 * 70.75880 * 12 11 10 14 14 C 1.42908 * 113.99737 * 184.90368 * 13 12 11 15 15 C 1.50703 * 109.46696 * 175.04220 * 14 13 12 16 16 H 1.08002 * 120.00157 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99418 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99659 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00300 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47128 * 90.00853 * 19 17 15 21 21 H 1.48508 * 109.46894 * 210.00232 * 19 17 15 22 22 H 1.48497 * 109.47396 * 330.00388 * 19 17 15 23 23 H 1.08995 * 109.47147 * 305.21021 * 1 2 3 24 24 H 1.09002 * 109.46967 * 65.20403 * 1 2 3 25 25 H 1.08997 * 109.47666 * 185.20433 * 1 2 3 26 26 H 1.09003 * 109.47252 * 239.99614 * 2 1 3 27 27 H 1.09000 * 109.46796 * 120.00233 * 2 1 3 28 28 H 1.09004 * 108.91795 * 77.54633 * 5 3 2 29 29 H 1.08994 * 108.84560 * 318.94527 * 5 3 2 30 30 H 1.09005 * 108.76629 * 197.38894 * 6 5 3 31 31 H 1.08999 * 108.77116 * 79.22469 * 6 5 3 32 32 H 1.08997 * 109.57542 * 332.34003 * 7 6 5 33 33 H 1.09001 * 109.57263 * 211.96361 * 7 6 5 34 34 H 1.08995 * 109.05636 * 162.26318 * 8 7 6 35 35 H 1.09002 * 109.00048 * 43.31233 * 8 7 6 36 36 H 1.09004 * 108.79084 * 300.44336 * 9 8 7 37 37 H 1.08996 * 108.79142 * 182.21767 * 9 8 7 38 38 H 1.09003 * 109.46792 * 49.74476 * 11 10 3 39 39 H 1.08998 * 109.47235 * 289.74034 * 11 10 3 40 40 H 1.08994 * 109.47430 * 310.75226 * 12 11 10 41 41 H 1.09005 * 109.46715 * 190.75398 * 12 11 10 42 42 H 1.09000 * 109.47140 * 55.04532 * 14 13 12 43 43 H 1.08995 * 109.46967 * 295.04249 * 14 13 12 44 44 H 0.97004 * 120.00215 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6499 1.9548 0.8793 5 6 1.5257 2.1557 -1.2650 6 6 2.3304 3.4329 -1.5847 7 6 2.6504 4.2487 -0.3616 8 6 4.0294 3.8131 0.1823 9 6 3.9455 2.5513 0.9092 10 7 3.4813 1.4304 0.0650 11 6 3.9745 0.1454 0.5782 12 6 5.4916 0.0715 0.3948 13 8 6.1258 0.9746 1.3027 14 6 7.5424 1.0654 1.1376 15 6 8.0880 2.1281 2.0564 16 1 7.4199 2.6786 2.7021 17 6 9.4401 2.3974 2.0726 18 7 9.9162 3.3251 2.8741 19 14 10.5957 1.4446 0.9563 20 1 10.7230 2.1515 -0.3435 21 1 11.9314 1.3431 1.5974 22 1 10.0515 0.0820 0.7275 23 1 -0.3633 0.5925 0.8396 24 1 -0.3633 0.4310 -0.9329 25 1 -0.3634 -1.0234 0.0932 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.4796 2.4245 -1.1185 29 1 1.5993 1.4710 -2.1098 30 1 1.7528 4.0476 -2.2751 31 1 3.2637 3.1472 -2.0698 32 1 1.8881 4.0806 0.3992 33 1 2.6791 5.3059 -0.6251 34 1 4.4078 4.5852 0.8521 35 1 4.7199 3.6974 -0.6531 36 1 3.2546 2.6720 1.7436 37 1 4.9315 2.3079 1.3050 38 1 3.5021 -0.6700 0.0304 39 1 3.7320 0.0601 1.6375 40 1 5.7476 0.3455 -0.6286 41 1 5.8327 -0.9443 0.5950 42 1 7.7718 1.3258 0.1043 43 1 7.9987 0.1059 1.3804 44 1 10.8675 3.5143 2.8858 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339003200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:24 Heat of formation + Delta-G solvation = -47.684693 kcal Electronic energy + Delta-G solvation = -20391.564084 eV Core-core repulsion = 17536.851876 eV Total energy + Delta-G solvation = -2854.712208 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73871 -36.91120 -34.95631 -33.73572 -32.56532 -30.52507 -29.46952 -27.62923 -25.51646 -24.91763 -22.51877 -21.89424 -21.25728 -20.09962 -18.77930 -16.87427 -16.39084 -15.65084 -15.33304 -15.23026 -14.77573 -14.35696 -13.93904 -13.64237 -13.50520 -13.25956 -12.90812 -12.66725 -12.35942 -12.09307 -11.98686 -11.80253 -11.49432 -11.43188 -11.07268 -10.94499 -10.80696 -10.59672 -10.45760 -10.32898 -10.16504 -10.04024 -9.86913 -9.74974 -9.18253 -8.73518 -8.37811 -7.96016 -6.11747 -4.10691 3.25295 3.32331 3.33913 4.13424 4.35830 4.63111 4.73049 4.87323 5.03037 5.17215 5.20330 5.22492 5.33914 5.36391 5.49305 5.56715 5.61002 5.67962 5.74176 5.80877 5.86867 5.89078 5.93531 5.98402 6.04664 6.09180 6.12655 6.25336 6.31030 6.35677 6.49177 6.52580 6.55861 6.61615 6.80704 6.99720 7.07337 7.45994 7.56494 7.65308 8.01624 8.65552 8.98677 9.47945 11.01200 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.005199 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.449122 B = 5384.457537 C = 5919.256241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.137 4.137 3 C 0.084 3.916 4 H 0.044 0.956 5 C -0.099 4.099 6 C -0.109 4.109 7 C -0.117 4.117 8 C -0.108 4.108 9 C 0.027 3.973 10 N -0.520 5.520 11 C 0.053 3.947 12 C 0.059 3.941 13 O -0.377 6.377 14 C 0.167 3.833 15 C -0.518 4.518 16 H 0.082 0.918 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.875 3.125 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.266 1.266 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.051 0.949 26 H 0.069 0.931 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.022 0.978 37 H 0.128 0.872 38 H 0.087 0.913 39 H 0.040 0.960 40 H 0.049 0.951 41 H 0.041 0.959 42 H 0.000 1.000 43 H 0.002 0.998 44 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.101 -4.804 -8.177 19.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.174 4.174 3 C -0.025 4.025 4 H 0.062 0.938 5 C -0.137 4.137 6 C -0.146 4.146 7 C -0.155 4.155 8 C -0.146 4.146 9 C -0.099 4.099 10 N -0.245 5.245 11 C -0.074 4.074 12 C -0.019 4.019 13 O -0.296 6.296 14 C 0.092 3.908 15 C -0.556 4.556 16 H 0.100 0.900 17 C -0.129 4.129 18 N -0.534 5.534 19 Si 0.702 3.298 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.191 1.191 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.040 0.960 37 H 0.145 0.855 38 H 0.106 0.894 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.059 0.941 42 H 0.017 0.983 43 H 0.020 0.980 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -16.823 -4.544 -8.456 19.369 hybrid contribution 0.506 -0.658 0.048 0.831 sum -16.317 -5.201 -8.408 19.078 Atomic orbital electron populations 1.21803 0.95922 1.01327 1.01825 1.22103 0.95863 0.97130 1.02347 1.21535 0.88566 0.94836 0.97583 0.93844 1.21960 0.97885 0.96619 0.97271 1.21196 1.00536 0.95350 0.97554 1.21388 0.97821 0.98612 0.97664 1.20535 0.96349 0.96802 1.00945 1.21617 1.04549 0.90599 0.93086 1.61695 1.08071 1.02978 1.51719 1.22400 0.94308 0.92217 0.98512 1.22411 0.92139 0.93078 0.94230 1.87740 1.22445 1.62248 1.57202 1.20609 0.77419 0.96607 0.96118 1.20884 0.93283 1.18724 1.22671 0.90040 1.24756 0.97691 0.94977 0.95454 1.69876 1.13941 1.31663 1.37933 0.86865 0.80685 0.81040 0.81244 1.19930 1.20855 1.19122 0.92930 0.92541 0.92963 0.91219 0.91476 0.92810 0.92348 0.93611 0.91462 0.92767 0.92678 0.91802 0.91414 0.95992 0.85454 0.89445 0.94177 0.93261 0.94131 0.98278 0.98039 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.46 37.16 0.35 -0.97 16 2 C -0.14 -1.43 3.94 -26.73 -0.11 -1.54 16 3 C 0.08 1.05 1.89 -68.56 -0.13 0.92 16 4 H 0.04 0.58 6.51 -51.93 -0.34 0.24 16 5 C -0.10 -1.12 4.64 -25.50 -0.12 -1.24 16 6 C -0.11 -1.33 5.42 -27.32 -0.15 -1.48 16 7 C -0.12 -1.53 5.60 -27.21 -0.15 -1.68 16 8 C -0.11 -1.71 5.53 -29.32 -0.16 -1.88 16 9 C 0.03 0.46 4.78 -6.71 -0.03 0.43 16 10 N -0.52 -7.77 4.21 -231.43 -0.97 -8.74 16 11 C 0.05 0.78 4.17 -3.83 -0.02 0.77 16 12 C 0.06 1.03 6.15 37.15 0.23 1.26 16 13 O -0.38 -8.42 7.15 -35.23 -0.25 -8.67 16 14 C 0.17 4.19 4.76 36.01 0.17 4.36 16 15 C -0.52 -15.12 9.99 -34.44 -0.34 -15.46 16 16 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 17 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 18 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 19 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.47 7.10 -51.93 -0.37 0.10 16 25 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.07 0.72 7.42 -51.93 -0.39 0.33 16 27 H 0.07 0.72 6.32 -51.93 -0.33 0.39 16 28 H 0.05 0.54 7.52 -51.93 -0.39 0.15 16 29 H 0.06 0.65 7.95 -51.93 -0.41 0.23 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.92 7.38 -51.93 -0.38 0.54 16 32 H 0.05 0.69 7.15 -51.93 -0.37 0.32 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.07 1.15 7.58 -51.93 -0.39 0.76 16 36 H 0.02 0.37 7.24 -51.93 -0.38 -0.01 16 37 H 0.13 2.63 4.32 -52.03 -0.22 2.41 16 38 H 0.09 1.07 5.53 -51.93 -0.29 0.78 16 39 H 0.04 0.62 7.81 -51.93 -0.41 0.21 16 40 H 0.05 0.87 8.12 -51.93 -0.42 0.44 16 41 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 42 H 0.00 -0.01 7.54 -51.93 -0.39 -0.40 16 43 H 0.00 0.05 7.20 -51.93 -0.37 -0.33 16 44 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -29.87 323.28 -8.78 -38.65 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -7.98 Total: -1.66 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -0.55 Total: -14.47 kcal Atomic # 7 Polarization: -35.23 SS G_CDS: -0.20 Total: -35.43 kcal Atomic # 8 Polarization: -8.42 SS G_CDS: -0.25 Total: -8.67 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -29.87 -8.78 -38.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339003200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.036 kcal (2) G-P(sol) polarization free energy of solvation -29.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds