Wall clock time and date at job start Mon Mar 30 2020 07:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47462 * 2 1 4 4 H 1.08990 * 108.89161 * 58.50666 * 3 2 1 5 5 C 1.54065 * 108.97648 * 299.73941 * 3 2 1 6 6 C 1.54295 * 112.28585 * 198.26936 * 5 3 2 7 7 C 1.50464 * 113.03269 * 318.30506 * 6 5 3 8 8 C 1.54506 * 108.85224 * 92.15589 * 7 6 5 9 9 C 1.45862 * 111.59068 * 282.80627 * 8 7 6 10 10 N 1.44275 * 108.97618 * 177.27131 * 3 2 1 11 11 C 1.46902 * 111.00188 * 339.95088 * 10 3 2 12 12 C 1.52995 * 109.46760 * 169.74158 * 11 10 3 13 13 O 1.42901 * 109.47118 * 70.75880 * 12 11 10 14 14 C 1.42908 * 113.99737 * 184.90368 * 13 12 11 15 15 C 1.50703 * 109.46696 * 175.04220 * 14 13 12 16 16 H 1.08002 * 120.00157 * 0.02562 * 15 14 13 17 17 C 1.37873 * 119.99418 * 180.02562 * 15 14 13 18 18 N 1.31517 * 119.99659 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 120.00300 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47128 * 90.00853 * 19 17 15 21 21 H 1.48508 * 109.46894 * 210.00232 * 19 17 15 22 22 H 1.48497 * 109.47396 * 330.00388 * 19 17 15 23 23 H 1.08995 * 109.47147 * 305.21021 * 1 2 3 24 24 H 1.09002 * 109.46967 * 65.20403 * 1 2 3 25 25 H 1.08997 * 109.47666 * 185.20433 * 1 2 3 26 26 H 1.09003 * 109.47252 * 239.99614 * 2 1 3 27 27 H 1.09000 * 109.46796 * 120.00233 * 2 1 3 28 28 H 1.09004 * 108.91795 * 77.54633 * 5 3 2 29 29 H 1.08994 * 108.84560 * 318.94527 * 5 3 2 30 30 H 1.09005 * 108.76629 * 197.38894 * 6 5 3 31 31 H 1.08999 * 108.77116 * 79.22469 * 6 5 3 32 32 H 1.08997 * 109.57542 * 332.34003 * 7 6 5 33 33 H 1.09001 * 109.57263 * 211.96361 * 7 6 5 34 34 H 1.08995 * 109.05636 * 162.26318 * 8 7 6 35 35 H 1.09002 * 109.00048 * 43.31233 * 8 7 6 36 36 H 1.09004 * 108.79084 * 300.44336 * 9 8 7 37 37 H 1.08996 * 108.79142 * 182.21767 * 9 8 7 38 38 H 1.09003 * 109.46792 * 49.74476 * 11 10 3 39 39 H 1.08998 * 109.47235 * 289.74034 * 11 10 3 40 40 H 1.08994 * 109.47430 * 310.75226 * 12 11 10 41 41 H 1.09005 * 109.46715 * 190.75398 * 12 11 10 42 42 H 1.09000 * 109.47140 * 55.04532 * 14 13 12 43 43 H 1.08995 * 109.46967 * 295.04249 * 14 13 12 44 44 H 0.97004 * 120.00215 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6499 1.9548 0.8793 5 6 1.5257 2.1557 -1.2650 6 6 2.3304 3.4329 -1.5847 7 6 2.6504 4.2487 -0.3616 8 6 4.0294 3.8131 0.1823 9 6 3.9455 2.5513 0.9092 10 7 3.4813 1.4304 0.0650 11 6 3.9745 0.1454 0.5782 12 6 5.4916 0.0715 0.3948 13 8 6.1258 0.9746 1.3027 14 6 7.5424 1.0654 1.1376 15 6 8.0880 2.1281 2.0564 16 1 7.4199 2.6786 2.7021 17 6 9.4401 2.3974 2.0726 18 7 9.9162 3.3251 2.8741 19 14 10.5957 1.4446 0.9563 20 1 10.7230 2.1515 -0.3435 21 1 11.9314 1.3431 1.5974 22 1 10.0515 0.0820 0.7275 23 1 -0.3633 0.5925 0.8396 24 1 -0.3633 0.4310 -0.9329 25 1 -0.3634 -1.0234 0.0932 26 1 1.8934 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 0.4796 2.4245 -1.1185 29 1 1.5993 1.4710 -2.1098 30 1 1.7528 4.0476 -2.2751 31 1 3.2637 3.1472 -2.0698 32 1 1.8881 4.0806 0.3992 33 1 2.6791 5.3059 -0.6251 34 1 4.4078 4.5852 0.8521 35 1 4.7199 3.6974 -0.6531 36 1 3.2546 2.6720 1.7436 37 1 4.9315 2.3079 1.3050 38 1 3.5021 -0.6700 0.0304 39 1 3.7320 0.0601 1.6375 40 1 5.7476 0.3455 -0.6286 41 1 5.8327 -0.9443 0.5950 42 1 7.7718 1.3258 0.1043 43 1 7.9987 0.1059 1.3804 44 1 10.8675 3.5143 2.8858 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339003200.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:24 Heat of formation + Delta-G solvation = -66.286146 kcal Electronic energy + Delta-G solvation = -20392.370704 eV Core-core repulsion = 17536.851876 eV Total energy + Delta-G solvation = -2855.518828 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.89200 -38.54766 -36.05249 -35.08392 -34.54164 -31.61866 -30.90513 -29.44928 -26.70329 -25.90658 -23.98124 -23.64312 -22.39115 -21.33769 -19.80263 -19.03122 -17.73251 -17.24750 -16.63534 -16.53443 -16.10528 -16.03667 -15.21273 -14.82654 -14.71206 -14.53739 -14.40409 -14.00111 -13.77502 -13.42476 -13.22828 -13.02679 -12.88893 -12.69134 -12.51124 -12.26121 -12.12064 -11.85200 -11.79647 -11.56958 -11.45121 -11.43566 -11.23370 -11.16981 -10.92214 -10.83839 -10.10788 -9.15851 -8.36672 -6.43720 1.33003 1.35380 1.46171 2.29242 2.96190 2.96447 3.06504 3.80796 3.90457 3.99200 4.17413 4.23631 4.28288 4.37227 4.38346 4.46601 4.50574 4.55642 4.61581 4.66559 4.71939 4.78486 4.81955 4.88202 4.95567 4.97375 5.05624 5.12671 5.15131 5.24981 5.27904 5.35072 5.38229 5.44640 5.45594 5.50809 5.59775 5.70236 5.94474 6.20375 6.43115 6.59849 6.76238 7.20791 8.80307 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.028407 B = 0.005199 C = 0.004729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 985.449122 B = 5384.457537 C = 5919.256241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.133 4.133 3 C 0.080 3.920 4 H 0.033 0.967 5 C -0.095 4.095 6 C -0.108 4.108 7 C -0.108 4.108 8 C -0.108 4.108 9 C 0.035 3.965 10 N -0.523 5.523 11 C 0.059 3.941 12 C 0.051 3.949 13 O -0.394 6.394 14 C 0.179 3.821 15 C -0.539 4.539 16 H 0.031 0.969 17 C 0.015 3.985 18 N -0.943 5.943 19 Si 0.952 3.048 20 H -0.262 1.262 21 H -0.274 1.274 22 H -0.246 1.246 23 H 0.049 0.951 24 H 0.064 0.936 25 H 0.063 0.937 26 H 0.077 0.923 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.048 0.952 35 H 0.051 0.949 36 H 0.018 0.982 37 H 0.088 0.912 38 H 0.122 0.878 39 H 0.031 0.969 40 H 0.050 0.950 41 H 0.059 0.941 42 H 0.007 0.993 43 H 0.010 0.990 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.297 -6.655 -10.420 22.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.171 4.171 3 C -0.029 4.029 4 H 0.051 0.949 5 C -0.133 4.133 6 C -0.146 4.146 7 C -0.146 4.146 8 C -0.146 4.146 9 C -0.092 4.092 10 N -0.247 5.247 11 C -0.069 4.069 12 C -0.026 4.026 13 O -0.314 6.314 14 C 0.103 3.897 15 C -0.577 4.577 16 H 0.049 0.951 17 C -0.183 4.183 18 N -0.582 5.582 19 Si 0.774 3.226 20 H -0.186 1.186 21 H -0.199 1.199 22 H -0.170 1.170 23 H 0.068 0.932 24 H 0.083 0.917 25 H 0.082 0.918 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.084 0.916 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.106 0.894 38 H 0.140 0.860 39 H 0.049 0.951 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.025 0.975 43 H 0.027 0.973 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.053 -6.403 -10.701 21.942 hybrid contribution 0.787 -0.024 0.821 1.137 sum -17.266 -6.427 -9.881 20.906 Atomic orbital electron populations 1.21768 0.94373 1.02159 1.02170 1.22059 0.97203 0.95380 1.02460 1.21643 0.86737 0.96596 0.97906 0.94903 1.21954 0.98559 0.96076 0.96734 1.21180 1.00219 0.96068 0.97111 1.21315 0.95636 0.99457 0.98158 1.20494 0.98093 0.96073 0.99934 1.21411 1.02274 0.91980 0.93521 1.61723 1.09956 1.02260 1.50747 1.22465 0.92586 0.93232 0.98604 1.22741 0.93584 0.92983 0.93306 1.87789 1.20965 1.63898 1.58773 1.20294 0.79142 0.95183 0.95060 1.21133 0.93402 1.19930 1.23188 0.95065 1.25785 0.99535 0.95927 0.97081 1.70032 1.14812 1.33505 1.39862 0.85656 0.77899 0.80157 0.78928 1.18622 1.19909 1.16978 0.93221 0.91693 0.91816 0.90476 0.91878 0.90952 0.91515 0.91616 0.93250 0.92352 0.91578 0.93314 0.93031 0.96394 0.89389 0.86020 0.95077 0.93182 0.92255 0.97535 0.97255 0.91898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.46 71.98 0.68 -1.44 16 2 C -0.13 -2.42 3.94 30.59 0.12 -2.30 16 3 C 0.08 1.85 1.89 45.77 0.09 1.94 16 4 H 0.03 0.84 6.51 -2.39 -0.02 0.83 16 5 C -0.10 -1.89 4.64 31.39 0.15 -1.75 16 6 C -0.11 -2.44 5.42 30.21 0.16 -2.28 16 7 C -0.11 -2.73 5.60 30.29 0.17 -2.57 16 8 C -0.11 -3.56 5.53 28.92 0.16 -3.40 16 9 C 0.03 1.23 4.78 83.94 0.40 1.63 16 10 N -0.52 -15.26 4.21 -886.12 -3.73 -18.99 16 11 C 0.06 1.65 4.17 86.30 0.36 2.01 16 12 C 0.05 1.73 6.15 71.98 0.44 2.17 16 13 O -0.39 -18.02 7.15 -148.98 -1.07 -19.09 16 14 C 0.18 8.99 4.76 71.24 0.34 9.33 16 15 C -0.54 -32.76 9.99 25.60 0.26 -32.51 16 16 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 17 C 0.01 0.87 5.47 84.65 0.46 1.33 16 18 N -0.94 -59.60 13.96 21.45 0.30 -59.30 16 19 Si 0.95 43.81 27.47 68.60 1.88 45.70 16 20 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 22 H -0.25 -10.47 6.54 99.48 0.65 -9.82 16 23 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 24 H 0.06 0.84 7.10 -2.39 -0.02 0.82 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.08 1.31 7.42 -2.39 -0.02 1.29 16 27 H 0.06 1.20 6.32 -2.39 -0.02 1.19 16 28 H 0.07 1.20 7.52 -2.38 -0.02 1.19 16 29 H 0.07 1.25 7.95 -2.39 -0.02 1.23 16 30 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 31 H 0.05 1.30 7.38 -2.39 -0.02 1.28 16 32 H 0.06 1.43 7.15 -2.39 -0.02 1.42 16 33 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.05 1.83 7.58 -2.39 -0.02 1.82 16 36 H 0.02 0.63 7.24 -2.38 -0.02 0.61 16 37 H 0.09 3.88 4.32 -4.03 -0.02 3.86 16 38 H 0.12 2.62 5.53 -2.39 -0.01 2.61 16 39 H 0.03 0.94 7.81 -2.39 -0.02 0.92 16 40 H 0.05 1.70 8.12 -2.39 -0.02 1.68 16 41 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.01 0.34 7.54 -2.39 -0.02 0.32 16 43 H 0.01 0.47 7.20 -2.39 -0.02 0.45 16 44 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 Total: -1.00 -67.28 323.28 2.06 -65.23 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 0.88 Total: 14.29 kcal Atomic # 6 Polarization: -31.62 SS G_CDS: 3.79 Total: -27.84 kcal Atomic # 7 Polarization: -74.86 SS G_CDS: -3.43 Total: -78.29 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -1.07 Total: -19.09 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Total: -67.28 2.06 -65.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339003200.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.058 kcal (2) G-P(sol) polarization free energy of solvation -67.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.228 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds