Wall clock time and date at job start Mon Mar 30 2020 07:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46666 * 2 1 4 4 H 1.09008 * 108.78219 * 56.54988 * 3 2 1 5 5 C 1.50447 * 108.81291 * 174.84393 * 3 2 1 6 6 C 1.54314 * 108.49802 * 214.59767 * 5 3 2 7 7 C 1.45880 * 112.17949 * 281.46183 * 6 5 3 8 8 C 1.54313 * 112.18932 * 61.12394 * 7 6 5 9 9 C 1.50445 * 108.49462 * 281.46040 * 8 7 6 10 10 N 1.48000 * 108.81312 * 298.14502 * 3 2 1 11 11 C 1.46891 * 111.00103 * 323.97493 * 10 3 2 12 12 C 1.53000 * 109.47379 * 166.56857 * 11 10 3 13 13 O 1.42900 * 109.46950 * 64.99924 * 12 11 10 14 14 C 1.42900 * 113.99798 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47154 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99802 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99948 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00021 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99716 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47390 * 89.99694 * 19 17 15 21 21 H 1.48505 * 109.47031 * 209.99912 * 19 17 15 22 22 H 1.48505 * 109.47312 * 329.99505 * 19 17 15 23 23 H 1.08997 * 109.47652 * 60.00131 * 1 2 3 24 24 H 1.09006 * 109.46616 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47525 * 299.99327 * 1 2 3 26 26 H 1.08997 * 109.47525 * 240.00672 * 2 1 3 27 27 H 1.08997 * 109.47652 * 119.99869 * 2 1 3 28 28 H 1.08998 * 109.63435 * 94.88837 * 5 3 2 29 29 H 1.09005 * 109.62840 * 334.29340 * 5 3 2 30 30 H 1.08994 * 108.93857 * 160.76795 * 6 5 3 31 31 H 1.08998 * 108.93732 * 42.15786 * 6 5 3 32 32 H 1.08998 * 108.93532 * 181.81840 * 7 6 5 33 33 H 1.08992 * 108.94073 * 300.51278 * 7 6 5 34 34 H 1.09002 * 109.62741 * 41.15947 * 8 7 6 35 35 H 1.08990 * 109.63258 * 161.75861 * 8 7 6 36 36 H 1.08999 * 108.80848 * 214.59069 * 9 8 7 37 37 H 1.09000 * 108.81171 * 332.86272 * 9 8 7 38 38 H 1.09003 * 109.47002 * 286.56928 * 11 10 3 39 39 H 1.09003 * 109.47288 * 46.56912 * 11 10 3 40 40 H 1.09003 * 109.47383 * 184.99919 * 12 11 10 41 41 H 1.09003 * 109.47102 * 305.00158 * 12 11 10 42 42 H 1.08995 * 109.47412 * 299.99885 * 14 13 12 43 43 H 1.09006 * 109.47485 * 60.00194 * 14 13 12 44 44 H 0.97005 * 119.99864 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6205 1.9630 0.8611 5 6 3.5388 1.4273 0.1280 6 6 3.9714 2.6512 0.9623 7 6 3.9708 3.8809 0.1773 8 6 2.5691 4.2217 -0.3707 9 6 2.3034 3.3567 -1.5726 10 7 1.5759 2.1128 -1.2353 11 6 1.5724 1.1806 -2.3705 12 6 0.7856 1.7930 -3.5310 13 8 1.4626 2.9599 -4.0021 14 6 0.8070 3.6122 -5.0915 15 6 1.6032 4.8232 -5.5046 16 1 2.5182 5.0702 -4.9867 17 6 1.1630 5.6163 -6.5430 18 7 0.0486 5.3158 -7.1732 19 14 2.1504 7.1169 -7.0554 20 1 3.1350 6.7295 -8.0974 21 1 1.2336 8.1502 -7.6005 22 1 2.8675 7.6642 -5.8758 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.9915 1.4804 -0.8621 29 1 3.8542 0.5123 0.6295 30 1 4.9758 2.4788 1.3488 31 1 3.2861 2.7671 1.8019 32 1 4.3140 4.7022 0.8064 33 1 4.6585 3.7661 -0.6604 34 1 1.8188 4.0251 0.3951 35 1 2.5346 5.2718 -0.6605 36 1 1.7131 3.9253 -2.2912 37 1 3.2554 3.0932 -2.0334 38 1 2.5978 0.9900 -2.6872 39 1 1.1050 0.2430 -2.0694 40 1 0.7072 1.0668 -4.3402 41 1 -0.2130 2.0654 -3.1893 42 1 0.7287 2.9240 -5.9331 43 1 -0.1910 3.9224 -4.7817 44 1 -0.2613 5.8740 -7.9035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339003201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:27 Heat of formation + Delta-G solvation = -55.279308 kcal Electronic energy + Delta-G solvation = -20445.328081 eV Core-core repulsion = 17590.286546 eV Total energy + Delta-G solvation = -2855.041535 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.73416 -36.70939 -35.17347 -33.26815 -32.53014 -30.40660 -29.46132 -27.05281 -25.42267 -24.67030 -22.34131 -22.13468 -21.50840 -20.28228 -18.58809 -16.59750 -16.19091 -15.98189 -15.33323 -14.78533 -14.56746 -14.44683 -13.93807 -13.60813 -13.43682 -13.05080 -12.87454 -12.58195 -12.30506 -11.92619 -11.75137 -11.57239 -11.33752 -11.10372 -11.05607 -10.87882 -10.76095 -10.63015 -10.62712 -10.45690 -10.33108 -10.15206 -9.97206 -9.73791 -9.04691 -8.73235 -8.09499 -7.70556 -6.08531 -4.09963 3.31096 3.36302 3.41245 4.16053 4.37032 4.65891 4.83779 4.93878 5.01556 5.16822 5.20811 5.28110 5.32817 5.41957 5.54338 5.64262 5.67149 5.75162 5.79153 5.80699 5.87563 5.94534 6.04631 6.08485 6.14694 6.17849 6.22894 6.26858 6.30314 6.33579 6.38283 6.46269 6.52504 6.66781 7.02999 7.17442 7.47709 7.55073 7.65473 7.81559 8.19226 8.62687 9.03861 9.54905 11.03007 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.005434 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.988909 B = 5151.157732 C = 6027.023236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.129 4.129 3 C 0.088 3.912 4 H 0.076 0.924 5 C -0.146 4.146 6 C -0.112 4.112 7 C -0.123 4.123 8 C -0.120 4.120 9 C 0.062 3.938 10 N -0.535 5.535 11 C 0.051 3.949 12 C 0.064 3.936 13 O -0.390 6.390 14 C 0.194 3.806 15 C -0.512 4.512 16 H 0.065 0.935 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.285 1.285 22 H -0.272 1.272 23 H 0.070 0.930 24 H 0.044 0.956 25 H 0.051 0.949 26 H 0.066 0.934 27 H 0.060 0.940 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.069 0.931 36 H 0.108 0.892 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.091 0.909 40 H 0.037 0.963 41 H 0.044 0.956 42 H 0.002 0.998 43 H 0.005 0.995 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.113 -8.785 15.637 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.167 4.167 3 C -0.020 4.020 4 H 0.094 0.906 5 C -0.185 4.185 6 C -0.149 4.149 7 C -0.161 4.161 8 C -0.158 4.158 9 C -0.064 4.064 10 N -0.261 5.261 11 C -0.077 4.077 12 C -0.014 4.014 13 O -0.310 6.310 14 C 0.120 3.880 15 C -0.550 4.550 16 H 0.083 0.917 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.733 3.267 20 H -0.206 1.206 21 H -0.211 1.211 22 H -0.196 1.196 23 H 0.089 0.911 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.087 0.913 36 H 0.126 0.874 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.109 0.891 40 H 0.055 0.945 41 H 0.063 0.937 42 H 0.020 0.980 43 H 0.023 0.977 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.716 -8.503 15.653 18.197 hybrid contribution 1.057 0.441 -0.698 1.341 sum 4.774 -8.062 14.955 17.648 Atomic orbital electron populations 1.21794 0.95188 1.00667 1.03033 1.21928 0.96948 0.96190 1.01627 1.21500 0.92428 0.93941 0.94130 0.90585 1.22008 0.97827 0.97938 1.00724 1.20500 1.00817 0.95103 0.98506 1.20634 0.98225 0.97281 0.99948 1.21479 0.95924 0.99938 0.98462 1.22026 0.97773 0.89874 0.96770 1.61988 1.56233 1.05539 1.02335 1.22395 0.99182 0.95682 0.90394 1.22297 0.95811 0.89127 0.94132 1.87894 1.51022 1.39426 1.52679 1.20162 0.92893 0.91700 0.83291 1.21044 1.08956 1.08825 1.16204 0.91692 1.24936 0.95273 0.98214 0.96034 1.69962 1.21570 1.39280 1.22946 0.86381 0.79626 0.81908 0.78829 1.20559 1.21113 1.19647 0.91098 0.93657 0.92966 0.91569 0.92135 0.91687 0.91842 0.92878 0.92358 0.92684 0.92286 0.91423 0.91256 0.87365 0.95060 0.94969 0.89145 0.94501 0.93741 0.98033 0.97732 0.92719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.29 37.16 0.35 -1.24 16 2 C -0.13 -1.37 4.66 -26.73 -0.12 -1.49 16 3 C 0.09 1.08 1.76 -68.38 -0.12 0.96 16 4 H 0.08 0.95 6.58 -51.92 -0.34 0.60 16 5 C -0.15 -1.68 5.11 -27.32 -0.14 -1.82 16 6 C -0.11 -1.22 5.30 -29.41 -0.16 -1.38 16 7 C -0.12 -1.52 5.30 -29.41 -0.16 -1.68 16 8 C -0.12 -1.71 5.63 -27.32 -0.15 -1.87 16 9 C 0.06 1.05 3.88 -4.49 -0.02 1.03 16 10 N -0.54 -8.10 4.17 -227.92 -0.95 -9.05 16 11 C 0.05 0.79 4.15 -3.83 -0.02 0.78 16 12 C 0.06 1.21 6.17 37.16 0.23 1.44 16 13 O -0.39 -9.16 7.03 -35.23 -0.25 -9.41 16 14 C 0.19 5.29 5.69 36.01 0.20 5.50 16 15 C -0.51 -14.95 9.43 -34.44 -0.32 -15.28 16 16 H 0.06 1.88 7.81 -52.49 -0.41 1.47 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 19 Si 0.91 21.88 29.54 -169.99 -5.02 16.86 16 20 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.07 0.87 6.37 -51.93 -0.33 0.54 16 24 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.07 0.71 6.05 -51.93 -0.31 0.40 16 27 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 28 H 0.06 0.87 6.81 -51.93 -0.35 0.52 16 29 H 0.06 0.64 7.59 -51.93 -0.39 0.25 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.61 7.51 -51.93 -0.39 0.22 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.79 7.51 -51.93 -0.39 0.40 16 34 H 0.07 0.93 7.08 -51.93 -0.37 0.56 16 35 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.11 2.26 5.88 -51.93 -0.31 1.95 16 37 H 0.03 0.57 6.39 -51.93 -0.33 0.24 16 38 H 0.03 0.52 7.82 -51.93 -0.41 0.12 16 39 H 0.09 1.19 4.19 -51.93 -0.22 0.97 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.00 0.05 8.14 -51.93 -0.42 -0.37 16 43 H 0.00 0.14 8.14 -51.93 -0.42 -0.28 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 324.29 15.07 4.89 4.89 Total: -1.00 -29.66 324.29 -9.03 -38.68 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -7.90 Total: -2.19 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: -0.53 Total: -13.53 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.21 Total: -35.30 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.25 Total: -9.41 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -29.66 -9.03 -38.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339003201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.595 kcal (2) G-P(sol) polarization free energy of solvation -29.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds