Wall clock time and date at job start Mon Mar 30 2020 07:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46666 * 2 1 4 4 H 1.09008 * 108.78219 * 56.54988 * 3 2 1 5 5 C 1.50447 * 108.81291 * 174.84393 * 3 2 1 6 6 C 1.54314 * 108.49802 * 214.59767 * 5 3 2 7 7 C 1.45880 * 112.17949 * 281.46183 * 6 5 3 8 8 C 1.54313 * 112.18932 * 61.12394 * 7 6 5 9 9 C 1.50445 * 108.49462 * 281.46040 * 8 7 6 10 10 N 1.48000 * 108.81312 * 298.14502 * 3 2 1 11 11 C 1.46891 * 111.00103 * 323.97493 * 10 3 2 12 12 C 1.53000 * 109.47379 * 166.56857 * 11 10 3 13 13 O 1.42900 * 109.46950 * 64.99924 * 12 11 10 14 14 C 1.42900 * 113.99798 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47154 * 179.97438 * 14 13 12 16 16 H 1.07995 * 119.99802 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99948 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00021 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99716 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47390 * 89.99694 * 19 17 15 21 21 H 1.48505 * 109.47031 * 209.99912 * 19 17 15 22 22 H 1.48505 * 109.47312 * 329.99505 * 19 17 15 23 23 H 1.08997 * 109.47652 * 60.00131 * 1 2 3 24 24 H 1.09006 * 109.46616 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47525 * 299.99327 * 1 2 3 26 26 H 1.08997 * 109.47525 * 240.00672 * 2 1 3 27 27 H 1.08997 * 109.47652 * 119.99869 * 2 1 3 28 28 H 1.08998 * 109.63435 * 94.88837 * 5 3 2 29 29 H 1.09005 * 109.62840 * 334.29340 * 5 3 2 30 30 H 1.08994 * 108.93857 * 160.76795 * 6 5 3 31 31 H 1.08998 * 108.93732 * 42.15786 * 6 5 3 32 32 H 1.08998 * 108.93532 * 181.81840 * 7 6 5 33 33 H 1.08992 * 108.94073 * 300.51278 * 7 6 5 34 34 H 1.09002 * 109.62741 * 41.15947 * 8 7 6 35 35 H 1.08990 * 109.63258 * 161.75861 * 8 7 6 36 36 H 1.08999 * 108.80848 * 214.59069 * 9 8 7 37 37 H 1.09000 * 108.81171 * 332.86272 * 9 8 7 38 38 H 1.09003 * 109.47002 * 286.56928 * 11 10 3 39 39 H 1.09003 * 109.47288 * 46.56912 * 11 10 3 40 40 H 1.09003 * 109.47383 * 184.99919 * 12 11 10 41 41 H 1.09003 * 109.47102 * 305.00158 * 12 11 10 42 42 H 1.08995 * 109.47412 * 299.99885 * 14 13 12 43 43 H 1.09006 * 109.47485 * 60.00194 * 14 13 12 44 44 H 0.97005 * 119.99864 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6205 1.9630 0.8611 5 6 3.5388 1.4273 0.1280 6 6 3.9714 2.6512 0.9623 7 6 3.9708 3.8809 0.1773 8 6 2.5691 4.2217 -0.3707 9 6 2.3034 3.3567 -1.5726 10 7 1.5759 2.1128 -1.2353 11 6 1.5724 1.1806 -2.3705 12 6 0.7856 1.7930 -3.5310 13 8 1.4626 2.9599 -4.0021 14 6 0.8070 3.6122 -5.0915 15 6 1.6032 4.8232 -5.5046 16 1 2.5182 5.0702 -4.9867 17 6 1.1630 5.6163 -6.5430 18 7 0.0486 5.3158 -7.1732 19 14 2.1504 7.1169 -7.0554 20 1 3.1350 6.7295 -8.0974 21 1 1.2336 8.1502 -7.6005 22 1 2.8675 7.6642 -5.8758 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0278 0.0005 25 1 -0.3634 0.5137 0.8900 26 1 1.8934 -0.5137 -0.8900 27 1 1.8934 -0.5138 0.8899 28 1 3.9915 1.4804 -0.8621 29 1 3.8542 0.5123 0.6295 30 1 4.9758 2.4788 1.3488 31 1 3.2861 2.7671 1.8019 32 1 4.3140 4.7022 0.8064 33 1 4.6585 3.7661 -0.6604 34 1 1.8188 4.0251 0.3951 35 1 2.5346 5.2718 -0.6605 36 1 1.7131 3.9253 -2.2912 37 1 3.2554 3.0932 -2.0334 38 1 2.5978 0.9900 -2.6872 39 1 1.1050 0.2430 -2.0694 40 1 0.7072 1.0668 -4.3402 41 1 -0.2130 2.0654 -3.1893 42 1 0.7287 2.9240 -5.9331 43 1 -0.1910 3.9224 -4.7817 44 1 -0.2613 5.8740 -7.9035 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339003201.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:30:26 Heat of formation + Delta-G solvation = -73.015696 kcal Electronic energy + Delta-G solvation = -20446.097189 eV Core-core repulsion = 17590.286546 eV Total energy + Delta-G solvation = -2855.810643 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.86973 -38.48086 -36.26966 -35.00284 -34.18350 -31.46448 -30.85385 -29.07692 -26.71950 -25.72340 -24.47750 -23.40516 -22.63292 -21.31230 -19.76713 -18.59881 -17.70614 -17.40127 -16.94527 -16.38418 -16.12915 -15.53316 -15.37572 -14.99395 -14.69960 -14.45783 -14.03969 -13.76567 -13.55320 -13.39224 -13.28197 -12.94906 -12.83873 -12.68081 -12.49210 -12.31765 -12.22952 -12.06950 -11.76777 -11.62379 -11.52488 -11.39633 -11.35409 -11.11809 -10.92033 -10.78130 -10.09822 -8.96858 -8.31702 -6.43636 1.38563 1.41305 1.53251 2.34103 2.95207 3.02176 3.26529 3.73629 3.85688 3.96842 4.13686 4.21807 4.29039 4.36578 4.38043 4.52448 4.52845 4.57288 4.68480 4.75171 4.77204 4.82635 4.88476 4.92279 4.95778 4.99332 5.15221 5.18640 5.20609 5.21734 5.25525 5.31930 5.33995 5.46728 5.49342 5.54981 5.59276 5.61042 5.97660 6.26002 6.45897 6.55907 6.84026 7.28287 8.80750 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.024513 B = 0.005434 C = 0.004645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.988909 B = 5151.157732 C = 6027.023236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.087 3.913 4 H 0.080 0.920 5 C -0.143 4.143 6 C -0.111 4.111 7 C -0.117 4.117 8 C -0.116 4.116 9 C 0.074 3.926 10 N -0.542 5.542 11 C 0.063 3.937 12 C 0.055 3.945 13 O -0.395 6.395 14 C 0.210 3.790 15 C -0.542 4.542 16 H 0.060 0.940 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.980 3.020 20 H -0.268 1.268 21 H -0.274 1.274 22 H -0.265 1.265 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.076 0.924 35 H 0.060 0.940 36 H 0.062 0.938 37 H 0.011 0.989 38 H 0.024 0.976 39 H 0.121 0.879 40 H 0.044 0.956 41 H 0.040 0.960 42 H -0.019 1.019 43 H -0.019 1.019 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.199 -9.182 17.398 20.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.164 4.164 3 C -0.020 4.020 4 H 0.098 0.902 5 C -0.181 4.181 6 C -0.148 4.148 7 C -0.155 4.155 8 C -0.154 4.154 9 C -0.053 4.053 10 N -0.268 5.268 11 C -0.065 4.065 12 C -0.022 4.022 13 O -0.315 6.315 14 C 0.135 3.865 15 C -0.580 4.580 16 H 0.078 0.922 17 C -0.192 4.192 18 N -0.570 5.570 19 Si 0.803 3.197 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.189 1.189 23 H 0.068 0.932 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.103 0.897 28 H 0.060 0.940 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.029 0.971 38 H 0.043 0.957 39 H 0.139 0.861 40 H 0.062 0.938 41 H 0.059 0.941 42 H -0.001 1.001 43 H -0.001 1.001 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.801 -8.924 17.434 20.165 hybrid contribution 0.656 0.489 -1.205 1.457 sum 5.457 -8.435 16.229 19.087 Atomic orbital electron populations 1.21770 0.95272 1.01414 1.02106 1.21928 0.96785 0.94885 1.02758 1.21610 0.93236 0.94883 0.92260 0.90155 1.21980 0.96842 0.99412 0.99915 1.20501 1.02160 0.93821 0.98357 1.20580 0.96168 0.98905 0.99808 1.21428 0.97746 0.98800 0.97457 1.21754 0.95782 0.90756 0.97040 1.61904 1.56405 1.05239 1.03264 1.22350 0.98335 0.96442 0.89339 1.22617 0.96158 0.87751 0.95678 1.87916 1.51179 1.41071 1.51355 1.19755 0.91872 0.91304 0.83605 1.21340 1.09319 1.10116 1.17197 0.92184 1.25936 0.96295 1.01425 0.95511 1.70074 1.23000 1.40669 1.23304 0.85224 0.78185 0.77565 0.78692 1.19361 1.19925 1.18878 0.93225 0.92105 0.92704 0.91675 0.89702 0.93958 0.89568 0.91227 0.91091 0.91041 0.93815 0.90589 0.92126 0.91981 0.97057 0.95746 0.86101 0.93807 0.94137 1.00133 1.00079 0.92118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.29 71.98 0.67 -2.14 16 2 C -0.13 -2.30 4.66 30.59 0.14 -2.15 16 3 C 0.09 1.96 1.76 43.88 0.08 2.04 16 4 H 0.08 1.78 6.58 -2.38 -0.02 1.77 16 5 C -0.14 -2.97 5.11 30.21 0.15 -2.81 16 6 C -0.11 -2.14 5.30 28.86 0.15 -1.98 16 7 C -0.12 -2.74 5.30 28.86 0.15 -2.59 16 8 C -0.12 -3.32 5.63 30.21 0.17 -3.15 16 9 C 0.07 2.59 3.88 85.26 0.33 2.93 16 10 N -0.54 -16.38 4.17 -875.01 -3.65 -20.03 16 11 C 0.06 1.95 4.15 86.30 0.36 2.31 16 12 C 0.06 2.16 6.17 71.98 0.44 2.60 16 13 O -0.40 -19.58 7.03 -148.98 -1.05 -20.63 16 14 C 0.21 12.08 5.69 71.24 0.41 12.49 16 15 C -0.54 -32.77 9.43 25.60 0.24 -32.53 16 16 H 0.06 3.59 7.81 -2.91 -0.02 3.57 16 17 C 0.01 0.39 5.46 84.66 0.46 0.85 16 18 N -0.93 -56.94 13.29 21.45 0.28 -56.66 16 19 Si 0.98 45.06 29.54 68.60 2.03 47.09 16 20 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 21 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 22 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 23 H 0.05 1.15 6.37 -2.39 -0.02 1.14 16 24 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 26 H 0.06 1.22 6.05 -2.39 -0.01 1.20 16 27 H 0.08 1.20 7.95 -2.39 -0.02 1.18 16 28 H 0.04 1.09 6.81 -2.39 -0.02 1.07 16 29 H 0.09 1.43 7.59 -2.38 -0.02 1.41 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.23 7.51 -2.39 -0.02 1.21 16 32 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.04 1.15 7.51 -2.39 -0.02 1.13 16 34 H 0.08 2.02 7.08 -2.39 -0.02 2.00 16 35 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 36 H 0.06 2.77 5.88 -2.39 -0.01 2.75 16 37 H 0.01 0.43 6.39 -2.39 -0.02 0.41 16 38 H 0.02 0.80 7.82 -2.39 -0.02 0.78 16 39 H 0.12 3.02 4.19 -2.39 -0.01 3.01 16 40 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 42 H -0.02 -1.15 8.14 -2.39 -0.02 -1.17 16 43 H -0.02 -1.13 8.14 -2.38 -0.02 -1.15 16 44 H 0.27 15.29 8.31 -92.70 -0.77 14.52 16 Total: -1.00 -65.88 324.29 2.32 -63.55 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.94 Total: 10.80 kcal Atomic # 6 Polarization: -27.90 SS G_CDS: 3.76 Total: -24.14 kcal Atomic # 7 Polarization: -73.32 SS G_CDS: -3.36 Total: -76.68 kcal Atomic # 8 Polarization: -19.58 SS G_CDS: -1.05 Total: -20.63 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -65.88 2.32 -63.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339003201.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.462 kcal (2) G-P(sol) polarization free energy of solvation -65.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.554 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds