Wall clock time and date at job start Mon Mar 30 2020 06:35:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47059 * 2 1 4 4 C 1.52999 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.49789 * 55.08508 * 4 3 2 6 6 C 1.53119 * 109.50593 * 295.00459 * 4 3 2 7 7 C 1.53124 * 109.15841 * 182.40567 * 6 4 3 8 8 C 1.53032 * 109.28012 * 57.65244 * 7 6 4 9 9 N 1.46846 * 109.52260 * 300.82015 * 8 7 6 10 10 C 1.46902 * 111.00204 * 185.84105 * 9 8 7 11 11 C 1.53007 * 109.47067 * 66.04388 * 10 9 8 12 12 O 1.42897 * 109.46990 * 65.00228 * 11 10 9 13 13 C 1.42904 * 113.99943 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46786 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99545 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99963 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47127 * 89.99537 * 18 16 14 20 20 H 1.48497 * 109.47101 * 209.99819 * 18 16 14 21 21 H 1.48501 * 109.46837 * 329.99924 * 18 16 14 22 22 C 1.46846 * 111.19997 * 61.74591 * 9 8 7 23 23 H 1.09000 * 109.47436 * 60.00442 * 1 2 3 24 24 H 1.09004 * 109.46944 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47454 * 299.99881 * 1 2 3 26 26 H 1.08994 * 109.47454 * 240.00119 * 2 1 3 27 27 H 1.09001 * 109.47424 * 120.00112 * 2 1 3 28 28 H 1.09005 * 109.47026 * 60.00195 * 3 2 1 29 29 H 1.09001 * 109.47094 * 300.00314 * 3 2 1 30 30 H 1.08998 * 109.52394 * 62.49855 * 6 4 3 31 31 H 1.08999 * 109.51878 * 302.30339 * 6 4 3 32 32 H 1.08999 * 109.49853 * 297.70868 * 7 6 4 33 33 H 1.08996 * 109.49839 * 177.59898 * 7 6 4 34 34 H 1.09001 * 109.46314 * 180.80749 * 8 7 6 35 35 H 1.08999 * 109.45415 * 60.83229 * 8 7 6 36 36 H 1.09001 * 109.47344 * 186.04531 * 10 9 8 37 37 H 1.09004 * 109.47104 * 306.04740 * 10 9 8 38 38 H 1.08993 * 109.47056 * 185.00459 * 11 10 9 39 39 H 1.09005 * 109.47134 * 305.00466 * 11 10 9 40 40 H 1.08995 * 109.46729 * 299.99849 * 13 12 11 41 41 H 1.08995 * 109.46959 * 60.00217 * 13 12 11 42 42 H 0.97003 * 119.99802 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.46231 * 58.27402 * 22 9 8 44 44 H 1.09004 * 109.46418 * 178.24241 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9341 0.8544 -0.8417 6 6 4.0807 0.8327 1.3090 7 6 5.6107 0.8915 1.3273 8 6 6.0624 2.3450 1.1681 9 7 5.5492 2.8825 -0.0985 10 6 6.0771 4.2298 -0.3511 11 6 7.5887 4.1516 -0.5748 12 8 7.8560 3.4111 -1.7673 13 6 9.2464 3.2788 -2.0700 14 6 9.4105 2.4854 -3.3408 15 1 8.5402 2.1193 -3.8650 16 6 10.6718 2.2270 -3.8340 17 7 11.7316 2.6733 -3.1959 18 14 10.8754 1.2430 -5.4087 19 1 10.8800 2.1661 -6.5721 20 1 12.1585 0.4968 -5.3638 21 1 9.7494 0.2841 -5.5422 22 6 4.0808 2.8801 -0.1201 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.7552 -0.2052 1.3786 31 1 3.6844 1.3972 2.1530 32 1 6.0075 0.2950 0.5058 33 1 5.9786 0.4977 2.2746 34 1 7.1515 2.3887 1.1663 35 1 5.6765 2.9380 1.9972 36 1 5.5997 4.6468 -1.2378 37 1 5.8695 4.8683 0.5076 38 1 7.9939 5.1585 -0.6738 39 1 8.0565 3.6536 0.2746 40 1 9.6855 4.2678 -2.2003 41 1 9.7488 2.7630 -1.2518 42 1 12.6190 2.4911 -3.5427 43 1 3.7044 3.4708 0.7150 44 1 3.7307 3.3124 -1.0575 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339018294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:49 Heat of formation + Delta-G solvation = -75.456180 kcal Electronic energy + Delta-G solvation = -19426.878388 eV Core-core repulsion = 16570.961917 eV Total energy + Delta-G solvation = -2855.916470 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.28097 -36.78293 -35.43855 -33.09814 -32.45712 -31.04697 -28.91421 -26.73759 -26.21186 -24.02758 -22.41058 -22.23034 -21.54127 -20.20294 -19.59754 -16.33611 -16.10506 -15.55318 -15.41518 -14.93435 -14.39057 -14.29291 -14.25575 -14.02568 -13.59701 -13.36828 -13.09707 -12.73648 -12.51795 -12.06559 -11.92211 -11.75105 -11.54329 -11.18741 -11.12820 -10.94640 -10.80339 -10.74871 -10.68311 -10.58585 -10.49860 -10.09814 -10.06351 -9.79166 -9.01403 -8.72254 -8.07160 -7.95374 -6.04470 -4.05090 3.34721 3.39343 3.45659 4.04376 4.41084 4.66089 4.74722 4.83768 4.96859 4.99997 5.06749 5.14320 5.32012 5.34915 5.44177 5.48982 5.54642 5.57461 5.63404 5.67867 5.71378 5.78028 5.80355 5.82895 5.93481 5.98271 6.03256 6.09113 6.12208 6.13780 6.20890 6.31772 6.37047 6.39343 6.54614 7.18251 7.37696 7.39513 7.51500 7.87761 8.24468 8.70309 9.10188 9.59572 11.07306 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.004074 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.636658 B = 6871.033911 C = 7493.223069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.113 4.113 4 C -0.086 4.086 5 H 0.082 0.918 6 C -0.113 4.113 7 C -0.118 4.118 8 C 0.055 3.945 9 N -0.523 5.523 10 C 0.062 3.938 11 C 0.066 3.934 12 O -0.379 6.379 13 C 0.194 3.806 14 C -0.509 4.509 15 H 0.067 0.933 16 C 0.054 3.946 17 N -0.901 5.901 18 Si 0.907 3.093 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.271 1.271 22 C 0.064 3.936 23 H 0.053 0.947 24 H 0.051 0.949 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.038 0.962 39 H 0.036 0.964 40 H 0.001 0.999 41 H 0.002 0.998 42 H 0.263 0.737 43 H 0.024 0.976 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.485 -1.685 10.444 21.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.105 4.105 5 H 0.100 0.900 6 C -0.151 4.151 7 C -0.156 4.156 8 C -0.073 4.073 9 N -0.248 5.248 10 C -0.066 4.066 11 C -0.012 4.012 12 O -0.299 6.299 13 C 0.120 3.880 14 C -0.547 4.547 15 H 0.085 0.915 16 C -0.146 4.146 17 N -0.541 5.541 18 Si 0.734 3.266 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.196 1.196 22 C -0.064 4.064 23 H 0.072 0.928 24 H 0.070 0.930 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.098 0.902 37 H 0.054 0.946 38 H 0.056 0.944 39 H 0.054 0.946 40 H 0.019 0.981 41 H 0.020 0.980 42 H 0.072 0.928 43 H 0.043 0.957 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.261 -2.063 9.937 20.891 hybrid contribution 0.293 0.256 0.071 0.396 sum -17.967 -1.807 10.008 20.645 Atomic orbital electron populations 1.21780 0.96229 1.01359 1.01603 1.21564 0.95396 0.97098 1.02243 1.21613 0.94982 0.96731 1.01746 1.21216 0.94079 0.96379 0.98805 0.89980 1.21656 0.95813 1.00560 0.97034 1.21580 0.95447 0.96623 1.01912 1.22122 1.00694 0.95204 0.89291 1.61749 1.06849 1.22824 1.33352 1.22116 0.95749 0.88728 0.99971 1.22266 0.93684 0.95142 0.90081 1.87950 1.28273 1.73778 1.39851 1.20165 0.76517 0.95529 0.95820 1.21074 0.92641 1.33408 1.07594 0.91528 1.24949 0.95442 0.96281 0.97945 1.69969 0.98084 1.46316 1.39703 0.86352 0.77497 0.79976 0.82764 1.20532 1.21157 1.19599 1.22086 0.87814 0.96218 1.00288 0.92833 0.92981 0.92998 0.91883 0.91884 0.92379 0.91956 0.91891 0.92763 0.90628 0.91939 0.90289 0.95815 0.90204 0.94622 0.94441 0.94609 0.98093 0.97978 0.92778 0.95740 0.90953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.09 5.69 -26.73 -0.15 -1.24 16 3 C -0.11 -1.06 4.69 -26.73 -0.13 -1.18 16 4 C -0.09 -0.99 2.35 -90.54 -0.21 -1.21 16 5 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 6 C -0.11 -1.23 4.98 -26.61 -0.13 -1.37 16 7 C -0.12 -1.50 6.09 -26.65 -0.16 -1.66 16 8 C 0.05 0.78 5.30 -3.84 -0.02 0.76 16 9 N -0.52 -8.26 4.60 -234.66 -1.08 -9.34 16 10 C 0.06 0.98 5.34 -3.82 -0.02 0.96 16 11 C 0.07 1.28 6.00 37.16 0.22 1.51 16 12 O -0.38 -9.52 10.27 -35.23 -0.36 -9.89 16 13 C 0.19 5.50 5.69 36.01 0.20 5.70 16 14 C -0.51 -15.42 9.43 -34.44 -0.32 -15.74 16 15 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 16 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 17 N -0.90 -27.53 13.29 55.43 0.74 -26.79 16 18 Si 0.91 22.32 29.54 -169.99 -5.02 17.30 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 22 C 0.06 0.83 4.74 -3.83 -0.02 0.81 16 23 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 24 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.53 6.62 -51.93 -0.34 0.19 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.63 6.69 -51.93 -0.35 0.28 16 31 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.08 1.24 6.13 -51.93 -0.32 0.93 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.08 1.27 7.98 -51.93 -0.41 0.85 16 37 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 38 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.04 0.68 6.23 -51.93 -0.32 0.35 16 40 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 41 H 0.00 0.07 8.14 -51.93 -0.42 -0.35 16 42 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 43 H 0.02 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.93 8.01 -51.93 -0.42 0.52 16 LS Contribution 342.75 15.07 5.17 5.17 Total: -1.00 -31.67 342.75 -9.50 -41.17 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -8.47 Total: -5.70 kcal Atomic # 6 Polarization: -11.45 SS G_CDS: -0.47 Total: -11.92 kcal Atomic # 7 Polarization: -35.79 SS G_CDS: -0.34 Total: -36.13 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: -0.36 Total: -9.89 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.67 -9.50 -41.17 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.282 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds