Wall clock time and date at job start Mon Mar 30 2020 06:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47059 * 2 1 4 4 C 1.52999 * 109.47263 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.49789 * 55.08508 * 4 3 2 6 6 C 1.53119 * 109.50593 * 295.00459 * 4 3 2 7 7 C 1.53124 * 109.15841 * 182.40567 * 6 4 3 8 8 C 1.53032 * 109.28012 * 57.65244 * 7 6 4 9 9 N 1.46846 * 109.52260 * 300.82015 * 8 7 6 10 10 C 1.46902 * 111.00204 * 185.84105 * 9 8 7 11 11 C 1.53007 * 109.47067 * 66.04388 * 10 9 8 12 12 O 1.42897 * 109.46990 * 65.00228 * 11 10 9 13 13 C 1.42904 * 113.99943 * 179.97438 * 12 11 10 14 14 C 1.50704 * 109.46786 * 180.02562 * 13 12 11 15 15 H 1.07996 * 120.00290 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99545 * 180.02562 * 14 13 12 17 17 N 1.31510 * 120.00042 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99963 * 179.97438 * 16 14 13 19 19 H 1.48508 * 109.47127 * 89.99537 * 18 16 14 20 20 H 1.48497 * 109.47101 * 209.99819 * 18 16 14 21 21 H 1.48501 * 109.46837 * 329.99924 * 18 16 14 22 22 C 1.46846 * 111.19997 * 61.74591 * 9 8 7 23 23 H 1.09000 * 109.47436 * 60.00442 * 1 2 3 24 24 H 1.09004 * 109.46944 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47454 * 299.99881 * 1 2 3 26 26 H 1.08994 * 109.47454 * 240.00119 * 2 1 3 27 27 H 1.09001 * 109.47424 * 120.00112 * 2 1 3 28 28 H 1.09005 * 109.47026 * 60.00195 * 3 2 1 29 29 H 1.09001 * 109.47094 * 300.00314 * 3 2 1 30 30 H 1.08998 * 109.52394 * 62.49855 * 6 4 3 31 31 H 1.08999 * 109.51878 * 302.30339 * 6 4 3 32 32 H 1.08999 * 109.49853 * 297.70868 * 7 6 4 33 33 H 1.08996 * 109.49839 * 177.59898 * 7 6 4 34 34 H 1.09001 * 109.46314 * 180.80749 * 8 7 6 35 35 H 1.08999 * 109.45415 * 60.83229 * 8 7 6 36 36 H 1.09001 * 109.47344 * 186.04531 * 10 9 8 37 37 H 1.09004 * 109.47104 * 306.04740 * 10 9 8 38 38 H 1.08993 * 109.47056 * 185.00459 * 11 10 9 39 39 H 1.09005 * 109.47134 * 305.00466 * 11 10 9 40 40 H 1.08995 * 109.46729 * 299.99849 * 13 12 11 41 41 H 1.08995 * 109.46959 * 60.00217 * 13 12 11 42 42 H 0.97003 * 119.99802 * 179.97438 * 17 16 14 43 43 H 1.08996 * 109.46231 * 58.27402 * 22 9 8 44 44 H 1.09004 * 109.46418 * 178.24241 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 1 3.9341 0.8544 -0.8417 6 6 4.0807 0.8327 1.3090 7 6 5.6107 0.8915 1.3273 8 6 6.0624 2.3450 1.1681 9 7 5.5492 2.8825 -0.0985 10 6 6.0771 4.2298 -0.3511 11 6 7.5887 4.1516 -0.5748 12 8 7.8560 3.4111 -1.7673 13 6 9.2464 3.2788 -2.0700 14 6 9.4105 2.4854 -3.3408 15 1 8.5402 2.1193 -3.8650 16 6 10.6718 2.2270 -3.8340 17 7 11.7316 2.6733 -3.1959 18 14 10.8754 1.2430 -5.4087 19 1 10.8800 2.1661 -6.5721 20 1 12.1585 0.4968 -5.3638 21 1 9.7494 0.2841 -5.5422 22 6 4.0808 2.8801 -0.1201 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 1.8933 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.6766 1.9564 0.8900 29 1 1.6766 1.9564 -0.8900 30 1 3.7552 -0.2052 1.3786 31 1 3.6844 1.3972 2.1530 32 1 6.0075 0.2950 0.5058 33 1 5.9786 0.4977 2.2746 34 1 7.1515 2.3887 1.1663 35 1 5.6765 2.9380 1.9972 36 1 5.5997 4.6468 -1.2378 37 1 5.8695 4.8683 0.5076 38 1 7.9939 5.1585 -0.6738 39 1 8.0565 3.6536 0.2746 40 1 9.6855 4.2678 -2.2003 41 1 9.7488 2.7630 -1.2518 42 1 12.6190 2.4911 -3.5427 43 1 3.7044 3.4708 0.7150 44 1 3.7307 3.3124 -1.0575 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339018294.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:48 Heat of formation + Delta-G solvation = -94.923090 kcal Electronic energy + Delta-G solvation = -19427.722536 eV Core-core repulsion = 16570.961917 eV Total energy + Delta-G solvation = -2856.760619 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.36177 -38.49847 -36.54250 -34.93955 -33.89934 -31.97282 -30.48305 -28.74636 -27.06256 -25.21190 -24.44645 -23.43955 -22.52434 -21.27579 -20.57862 -18.61114 -17.47326 -17.33587 -16.51383 -16.20990 -15.97091 -15.71038 -15.42912 -15.18150 -14.82020 -14.47800 -14.42599 -13.82224 -13.61720 -13.54713 -13.33759 -12.97114 -12.79193 -12.73036 -12.59452 -12.30238 -12.18937 -12.01791 -11.92125 -11.86048 -11.54911 -11.43930 -11.26890 -11.03068 -10.90134 -10.83838 -10.17206 -9.10781 -8.31760 -6.43783 1.39266 1.42595 1.54893 2.35391 2.92524 3.01699 3.24637 3.79309 3.90020 3.92374 4.08837 4.18736 4.28609 4.29952 4.34614 4.43152 4.48779 4.56382 4.62331 4.66405 4.68855 4.78950 4.81590 4.86792 4.92758 4.97435 4.98675 5.03522 5.08247 5.14536 5.18900 5.23210 5.29034 5.35587 5.44621 5.54050 5.55785 5.61290 5.97746 6.20176 6.29625 6.57475 6.86778 7.28518 8.80779 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.022765 B = 0.004074 C = 0.003736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.636658 B = 6871.033911 C = 7493.223069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.125 4.125 3 C -0.105 4.105 4 C -0.083 4.083 5 H 0.055 0.945 6 C -0.106 4.106 7 C -0.117 4.117 8 C 0.055 3.945 9 N -0.554 5.554 10 C 0.070 3.930 11 C 0.057 3.943 12 O -0.395 6.395 13 C 0.210 3.790 14 C -0.546 4.546 15 H 0.059 0.941 16 C 0.005 3.995 17 N -0.932 5.932 18 Si 0.984 3.016 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.266 1.266 22 C 0.065 3.935 23 H 0.052 0.948 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.052 0.948 27 H 0.066 0.934 28 H 0.070 0.930 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.044 0.956 36 H 0.078 0.922 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.037 0.963 40 H -0.017 1.017 41 H -0.019 1.019 42 H 0.271 0.729 43 H 0.042 0.958 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.957 -2.082 10.719 22.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.102 4.102 5 H 0.074 0.926 6 C -0.143 4.143 7 C -0.155 4.155 8 C -0.073 4.073 9 N -0.279 5.279 10 C -0.057 4.057 11 C -0.020 4.020 12 O -0.315 6.315 13 C 0.135 3.865 14 C -0.583 4.583 15 H 0.077 0.923 16 C -0.193 4.193 17 N -0.571 5.571 18 Si 0.806 3.194 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.190 1.190 22 C -0.062 4.062 23 H 0.071 0.929 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.071 0.929 27 H 0.085 0.915 28 H 0.089 0.911 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.001 0.999 41 H -0.002 1.002 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.751 -2.448 10.231 22.378 hybrid contribution 0.756 0.423 0.059 0.868 sum -18.995 -2.025 10.290 21.698 Atomic orbital electron populations 1.21762 0.95220 1.01861 1.01948 1.21554 0.96264 0.96488 1.01962 1.21548 0.93083 0.97381 1.02282 1.21181 0.95623 0.95184 0.98254 0.92617 1.21617 0.94139 1.01518 0.97072 1.21577 0.97004 0.95250 1.01661 1.22109 0.99325 0.96414 0.89413 1.61701 1.08794 1.22830 1.34578 1.22023 0.92767 0.89715 1.01222 1.22620 0.96729 0.94774 0.87926 1.87904 1.26051 1.74938 1.42575 1.19776 0.78057 0.93958 0.94720 1.21376 0.93157 1.34978 1.08815 0.92277 1.25974 0.94649 0.96915 1.01738 1.70073 0.98795 1.46821 1.41430 0.85179 0.77934 0.78426 0.77845 1.19130 1.19766 1.19014 1.22127 0.85999 0.97315 1.00763 0.92874 0.92457 0.92266 0.92906 0.91486 0.91146 0.92056 0.90759 0.91175 0.93433 0.90210 0.92687 0.93809 0.90373 0.91390 0.93557 0.94470 0.99888 1.00172 0.92048 0.93990 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.91 71.98 0.71 -1.26 16 2 C -0.13 -1.96 5.69 30.59 0.17 -1.78 16 3 C -0.10 -1.77 4.69 30.59 0.14 -1.63 16 4 C -0.08 -1.84 2.35 -10.74 -0.03 -1.86 16 5 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 6 C -0.11 -2.12 4.98 30.68 0.15 -1.96 16 7 C -0.12 -2.91 6.09 30.65 0.19 -2.72 16 8 C 0.05 1.54 5.30 86.32 0.46 1.99 16 9 N -0.55 -17.24 4.60 -896.34 -4.13 -21.36 16 10 C 0.07 2.18 5.34 86.31 0.46 2.64 16 11 C 0.06 2.23 6.00 71.98 0.43 2.66 16 12 O -0.40 -20.52 10.27 -148.98 -1.53 -22.05 16 13 C 0.21 12.39 5.69 71.24 0.41 12.80 16 14 C -0.55 -33.90 9.43 25.60 0.24 -33.66 16 15 H 0.06 3.66 7.81 -2.91 -0.02 3.64 16 16 C 0.01 0.32 5.46 84.66 0.46 0.79 16 17 N -0.93 -57.48 13.29 21.45 0.28 -57.19 16 18 Si 0.98 45.68 29.54 68.60 2.03 47.71 16 19 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 20 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 C 0.07 1.60 4.74 86.33 0.41 2.01 16 23 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 24 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 25 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 0.99 6.62 -2.39 -0.02 0.98 16 28 H 0.07 1.04 8.14 -2.38 -0.02 1.02 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.07 1.33 6.69 -2.39 -0.02 1.31 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.05 1.77 6.13 -2.39 -0.01 1.76 16 35 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 2.43 7.98 -2.39 -0.02 2.41 16 37 H 0.07 1.68 8.12 -2.39 -0.02 1.66 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.04 1.45 6.23 -2.38 -0.01 1.43 16 40 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 41 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 42 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 43 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.70 8.01 -2.38 -0.02 1.68 16 Total: -1.00 -68.81 342.75 1.79 -67.02 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: 0.92 Total: 7.87 kcal Atomic # 6 Polarization: -26.20 SS G_CDS: 4.21 Total: -21.99 kcal Atomic # 7 Polarization: -74.72 SS G_CDS: -3.84 Total: -78.56 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: -1.53 Total: -22.05 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -68.81 1.79 -67.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018294.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.904 kcal (2) G-P(sol) polarization free energy of solvation -68.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.019 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds