Wall clock time and date at job start Mon Mar 30 2020 06:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47369 * 2 1 4 4 C 1.53000 * 109.47369 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.49919 * 304.92645 * 4 3 2 6 6 C 1.53120 * 109.49874 * 65.00337 * 4 3 2 7 7 C 1.53121 * 109.16003 * 177.59855 * 6 4 3 8 8 C 1.53040 * 109.27730 * 302.34646 * 7 6 4 9 9 N 1.46843 * 109.52335 * 59.17597 * 8 7 6 10 10 C 1.46906 * 110.99886 * 174.16563 * 9 8 7 11 11 C 1.52998 * 109.47215 * 66.04437 * 10 9 8 12 12 O 1.42897 * 109.46795 * 65.00306 * 11 10 9 13 13 C 1.42905 * 113.99899 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47179 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.46847 * 111.19919 * 298.25750 * 9 8 7 23 23 H 1.09002 * 109.47282 * 59.99156 * 1 2 3 24 24 H 1.08994 * 109.47701 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47044 * 299.99835 * 1 2 3 26 26 H 1.09004 * 109.46377 * 240.00327 * 2 1 3 27 27 H 1.08995 * 109.46633 * 120.00715 * 2 1 3 28 28 H 1.09010 * 109.46903 * 60.00079 * 3 2 1 29 29 H 1.09002 * 109.47607 * 300.00644 * 3 2 1 30 30 H 1.08998 * 109.52328 * 57.69020 * 6 4 3 31 31 H 1.09006 * 109.57283 * 297.52844 * 6 4 3 32 32 H 1.09000 * 109.50451 * 182.40336 * 7 6 4 33 33 H 1.09004 * 109.53478 * 62.29993 * 7 6 4 34 34 H 1.09001 * 109.46038 * 299.16351 * 8 7 6 35 35 H 1.08993 * 109.45781 * 179.19153 * 8 7 6 36 36 H 1.09000 * 109.46758 * 306.04661 * 10 9 8 37 37 H 1.08993 * 109.47047 * 186.05237 * 10 9 8 38 38 H 1.08995 * 109.47274 * 305.00344 * 11 10 9 39 39 H 1.09002 * 109.46559 * 184.99809 * 11 10 9 40 40 H 1.09007 * 109.46810 * 59.99780 * 13 12 11 41 41 H 1.09003 * 109.46936 * 300.00543 * 13 12 11 42 42 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 43 43 H 1.09003 * 109.46285 * 181.75566 * 22 9 8 44 44 H 1.08999 * 109.46672 * 301.72496 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9335 0.8543 0.8433 6 6 4.0817 0.8323 -1.3072 7 6 5.6117 0.8909 -1.3244 8 6 6.0635 2.3444 -1.1651 9 7 5.5493 2.8821 0.1009 10 6 6.0772 4.2296 0.3536 11 6 5.5333 5.1963 -0.7002 12 8 4.1165 5.3119 -0.5544 13 6 3.5056 6.1970 -1.4955 14 6 2.0194 6.2426 -1.2506 15 1 1.5847 5.6550 -0.4556 16 6 1.2144 7.0347 -2.0417 17 7 1.7437 7.7508 -3.0095 18 14 -0.6280 7.0908 -1.7385 19 1 -1.2628 8.0106 -2.7165 20 1 -1.1975 5.7286 -1.8977 21 1 -0.8883 7.5782 -0.3602 22 6 4.0810 2.8799 0.1214 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8901 26 1 1.8932 -0.5138 -0.8901 27 1 1.8932 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9564 -0.8899 30 1 3.6860 1.3966 -2.1517 31 1 3.7561 -0.2056 -1.3779 32 1 5.9804 0.4969 -2.2715 33 1 6.0085 0.2944 -0.5028 34 1 5.6783 2.9374 -1.9946 35 1 7.1525 2.3878 -1.1625 36 1 7.1657 4.2091 0.3005 37 1 5.7680 4.5609 1.3448 38 1 5.7664 4.8177 -1.6954 39 1 5.9934 6.1754 -0.5668 40 1 3.6968 5.8395 -2.5074 41 1 3.9238 7.1967 -1.3784 42 1 1.1773 8.3077 -3.5662 43 1 3.7302 3.3124 1.0585 44 1 3.7051 3.4704 -0.7141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339018295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:52 Heat of formation + Delta-G solvation = -74.995895 kcal Electronic energy + Delta-G solvation = -20292.181245 eV Core-core repulsion = 17436.284734 eV Total energy + Delta-G solvation = -2855.896511 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.27242 -36.80248 -35.21622 -33.05090 -32.43051 -30.75004 -28.64110 -26.86986 -25.93887 -23.94937 -22.43104 -22.03119 -21.59595 -20.12473 -19.21219 -16.42452 -15.85729 -15.62512 -15.11807 -14.98088 -14.58684 -14.25275 -14.11377 -13.76179 -13.32609 -13.10839 -12.75765 -12.64816 -12.18651 -11.97924 -11.73563 -11.51471 -11.36972 -11.16624 -10.95370 -10.91166 -10.84255 -10.73934 -10.58770 -10.46847 -10.25591 -10.11033 -9.89023 -9.73118 -9.14439 -8.82701 -8.23157 -7.67227 -6.13446 -4.15412 3.29699 3.32785 3.36252 4.25151 4.34421 4.83554 4.99638 5.06348 5.15346 5.20710 5.23108 5.29296 5.37174 5.53655 5.62239 5.69916 5.75135 5.81277 5.85220 5.94992 5.96868 5.98092 6.02726 6.08387 6.14294 6.15638 6.23504 6.29796 6.33653 6.39806 6.45055 6.47866 6.67109 6.72749 6.98529 7.07712 7.38694 7.50186 7.54804 7.75926 8.11937 8.52228 8.97170 9.49562 10.98053 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.007337 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.763225 B = 3815.365424 C = 5348.078007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.115 4.115 4 C -0.082 4.082 5 H 0.066 0.934 6 C -0.116 4.116 7 C -0.113 4.113 8 C 0.050 3.950 9 N -0.535 5.535 10 C 0.059 3.941 11 C 0.023 3.977 12 O -0.385 6.385 13 C 0.193 3.807 14 C -0.513 4.513 15 H 0.066 0.934 16 C 0.057 3.943 17 N -0.899 5.899 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.274 1.274 21 H -0.274 1.274 22 C 0.053 3.947 23 H 0.054 0.946 24 H 0.048 0.952 25 H 0.053 0.947 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.036 0.964 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.036 0.964 39 H 0.039 0.961 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.264 0.736 43 H 0.069 0.931 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.392 -13.510 4.291 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.153 4.153 4 C -0.101 4.101 5 H 0.085 0.915 6 C -0.154 4.154 7 C -0.151 4.151 8 C -0.078 4.078 9 N -0.259 5.259 10 C -0.069 4.069 11 C -0.056 4.056 12 O -0.304 6.304 13 C 0.119 3.881 14 C -0.551 4.551 15 H 0.084 0.916 16 C -0.144 4.144 17 N -0.538 5.538 18 Si 0.732 3.268 19 H -0.212 1.212 20 H -0.199 1.199 21 H -0.200 1.200 22 C -0.074 4.074 23 H 0.074 0.926 24 H 0.067 0.933 25 H 0.072 0.928 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.098 0.902 38 H 0.054 0.946 39 H 0.057 0.943 40 H 0.020 0.980 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.088 0.912 44 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 5.399 -13.780 4.664 15.517 hybrid contribution -1.019 0.972 -0.895 1.669 sum 4.380 -12.808 3.769 14.051 Atomic orbital electron populations 1.21788 0.96288 1.00945 1.02057 1.21546 0.95454 0.97436 1.01482 1.21605 0.94859 0.96062 1.02803 1.21205 0.94541 0.97005 0.97362 0.91545 1.21672 0.95181 1.00360 0.98181 1.21542 0.96229 0.96261 1.01047 1.22084 0.98956 0.95398 0.91359 1.62175 1.09792 1.21327 1.32589 1.22243 0.98501 0.87002 0.99163 1.23008 0.85619 0.98484 0.98466 1.87976 1.16602 1.66792 1.59079 1.20181 0.93127 0.87665 0.87142 1.20989 0.90833 1.26669 1.16639 0.91594 1.24942 0.99403 0.95164 0.94889 1.69955 1.35979 1.28354 1.19487 0.86437 0.84131 0.78092 0.78099 1.21160 1.19948 1.19991 1.22439 0.85862 0.95040 1.04059 0.92646 0.93311 0.92819 0.92166 0.92521 0.91909 0.91458 0.92113 0.92290 0.92204 0.91662 0.94571 0.91649 0.90442 0.90223 0.94576 0.94325 0.98049 0.97931 0.92609 0.91233 0.89953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.75 9.91 37.16 0.37 -1.38 16 2 C -0.12 -1.45 5.69 -26.73 -0.15 -1.60 16 3 C -0.12 -1.65 4.69 -26.73 -0.13 -1.78 16 4 C -0.08 -1.19 2.35 -90.54 -0.21 -1.40 16 5 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 6 C -0.12 -1.56 4.98 -26.61 -0.13 -1.69 16 7 C -0.11 -1.41 6.09 -26.65 -0.16 -1.58 16 8 C 0.05 0.71 5.06 -3.83 -0.02 0.69 16 9 N -0.54 -8.38 4.86 -234.68 -1.14 -9.52 16 10 C 0.06 0.92 5.93 -3.82 -0.02 0.89 16 11 C 0.02 0.43 5.75 37.16 0.21 0.65 16 12 O -0.38 -8.92 6.77 -35.23 -0.24 -9.15 16 13 C 0.19 5.23 5.69 36.00 0.20 5.44 16 14 C -0.51 -14.85 9.43 -34.44 -0.32 -15.17 16 15 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 16 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 18 Si 0.91 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 21 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 22 C 0.05 0.91 3.51 -3.84 -0.01 0.90 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 25 H 0.05 0.61 8.14 -51.92 -0.42 0.18 16 26 H 0.06 0.69 6.63 -51.93 -0.34 0.34 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 29 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 0.70 6.70 -51.93 -0.35 0.35 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.04 0.58 6.65 -51.93 -0.35 0.24 16 35 H 0.07 0.82 8.06 -51.93 -0.42 0.40 16 36 H 0.08 1.00 8.06 -51.93 -0.42 0.58 16 37 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 38 H 0.04 0.67 6.46 -51.93 -0.34 0.34 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.00 0.05 8.14 -51.92 -0.42 -0.37 16 41 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 42 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 43 H 0.07 1.28 8.12 -51.93 -0.42 0.86 16 44 H 0.08 1.72 5.58 -51.93 -0.29 1.43 16 LS Contribution 336.68 15.07 5.07 5.07 Total: -1.00 -29.55 336.68 -9.45 -39.00 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -8.38 Total: -1.53 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -0.48 Total: -14.48 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: -0.40 Total: -35.65 kcal Atomic # 8 Polarization: -8.92 SS G_CDS: -0.24 Total: -9.15 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.55 -9.45 -39.00 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.998 kcal (2) G-P(sol) polarization free energy of solvation -29.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds