Wall clock time and date at job start Mon Mar 30 2020 06:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47369 * 2 1 4 4 C 1.53000 * 109.47369 * 179.97438 * 3 2 1 5 5 H 1.08994 * 109.49919 * 304.92645 * 4 3 2 6 6 C 1.53120 * 109.49874 * 65.00337 * 4 3 2 7 7 C 1.53121 * 109.16003 * 177.59855 * 6 4 3 8 8 C 1.53040 * 109.27730 * 302.34646 * 7 6 4 9 9 N 1.46843 * 109.52335 * 59.17597 * 8 7 6 10 10 C 1.46906 * 110.99886 * 174.16563 * 9 8 7 11 11 C 1.52998 * 109.47215 * 66.04437 * 10 9 8 12 12 O 1.42897 * 109.46795 * 65.00306 * 11 10 9 13 13 C 1.42905 * 113.99899 * 179.97438 * 12 11 10 14 14 C 1.50694 * 109.47179 * 180.02562 * 13 12 11 15 15 H 1.08000 * 120.00563 * 0.02562 * 14 13 12 16 16 C 1.37885 * 119.99902 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99913 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99766 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46985 * 179.97438 * 18 16 14 20 20 H 1.48494 * 109.47276 * 299.99832 * 18 16 14 21 21 H 1.48498 * 109.47150 * 60.00043 * 18 16 14 22 22 C 1.46847 * 111.19919 * 298.25750 * 9 8 7 23 23 H 1.09002 * 109.47282 * 59.99156 * 1 2 3 24 24 H 1.08994 * 109.47701 * 179.97438 * 1 2 3 25 25 H 1.09010 * 109.47044 * 299.99835 * 1 2 3 26 26 H 1.09004 * 109.46377 * 240.00327 * 2 1 3 27 27 H 1.08995 * 109.46633 * 120.00715 * 2 1 3 28 28 H 1.09010 * 109.46903 * 60.00079 * 3 2 1 29 29 H 1.09002 * 109.47607 * 300.00644 * 3 2 1 30 30 H 1.08998 * 109.52328 * 57.69020 * 6 4 3 31 31 H 1.09006 * 109.57283 * 297.52844 * 6 4 3 32 32 H 1.09000 * 109.50451 * 182.40336 * 7 6 4 33 33 H 1.09004 * 109.53478 * 62.29993 * 7 6 4 34 34 H 1.09001 * 109.46038 * 299.16351 * 8 7 6 35 35 H 1.08993 * 109.45781 * 179.19153 * 8 7 6 36 36 H 1.09000 * 109.46758 * 306.04661 * 10 9 8 37 37 H 1.08993 * 109.47047 * 186.05237 * 10 9 8 38 38 H 1.08995 * 109.47274 * 305.00344 * 11 10 9 39 39 H 1.09002 * 109.46559 * 184.99809 * 11 10 9 40 40 H 1.09007 * 109.46810 * 59.99780 * 13 12 11 41 41 H 1.09003 * 109.46936 * 300.00543 * 13 12 11 42 42 H 0.97001 * 119.99646 * 179.97438 * 17 16 14 43 43 H 1.09003 * 109.46285 * 181.75566 * 22 9 8 44 44 H 1.08999 * 109.46672 * 301.72496 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 1 3.9335 0.8543 0.8433 6 6 4.0817 0.8323 -1.3072 7 6 5.6117 0.8909 -1.3244 8 6 6.0635 2.3444 -1.1651 9 7 5.5493 2.8821 0.1009 10 6 6.0772 4.2296 0.3536 11 6 5.5333 5.1963 -0.7002 12 8 4.1165 5.3119 -0.5544 13 6 3.5056 6.1970 -1.4955 14 6 2.0194 6.2426 -1.2506 15 1 1.5847 5.6550 -0.4556 16 6 1.2144 7.0347 -2.0417 17 7 1.7437 7.7508 -3.0095 18 14 -0.6280 7.0908 -1.7385 19 1 -1.2628 8.0106 -2.7165 20 1 -1.1975 5.7286 -1.8977 21 1 -0.8883 7.5782 -0.3602 22 6 4.0810 2.8799 0.1214 23 1 -0.3634 0.5140 -0.8899 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8901 26 1 1.8932 -0.5138 -0.8901 27 1 1.8932 -0.5139 0.8899 28 1 1.6767 1.9563 0.8901 29 1 1.6767 1.9564 -0.8899 30 1 3.6860 1.3966 -2.1517 31 1 3.7561 -0.2056 -1.3779 32 1 5.9804 0.4969 -2.2715 33 1 6.0085 0.2944 -0.5028 34 1 5.6783 2.9374 -1.9946 35 1 7.1525 2.3878 -1.1625 36 1 7.1657 4.2091 0.3005 37 1 5.7680 4.5609 1.3448 38 1 5.7664 4.8177 -1.6954 39 1 5.9934 6.1754 -0.5668 40 1 3.6968 5.8395 -2.5074 41 1 3.9238 7.1967 -1.3784 42 1 1.1773 8.3077 -3.5662 43 1 3.7302 3.3124 1.0585 44 1 3.7051 3.4704 -0.7141 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339018295.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:51 Heat of formation + Delta-G solvation = -92.528236 kcal Electronic energy + Delta-G solvation = -20292.941505 eV Core-core repulsion = 17436.284734 eV Total energy + Delta-G solvation = -2856.656770 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.58001 -38.45043 -36.51422 -34.96969 -33.87857 -31.87157 -30.28954 -28.80022 -27.07161 -25.35486 -24.48504 -23.24731 -22.79509 -21.30468 -20.47776 -18.63097 -17.50334 -17.25555 -16.61584 -16.23373 -16.12806 -15.72193 -15.42587 -15.21279 -14.59686 -14.43335 -14.27435 -13.81055 -13.58938 -13.33817 -13.31780 -13.06353 -12.79716 -12.75267 -12.63901 -12.36782 -12.26341 -12.10924 -11.90975 -11.86998 -11.52226 -11.45426 -11.31985 -11.03807 -10.91898 -10.82117 -10.22132 -9.09224 -8.35763 -6.47999 1.35578 1.40011 1.48331 2.30254 2.95376 2.98145 3.24442 3.85859 3.93149 4.00481 4.11820 4.14505 4.26977 4.29632 4.35704 4.47006 4.51310 4.60419 4.67478 4.70310 4.76673 4.80706 4.82301 4.96445 4.98547 5.00103 5.07600 5.08874 5.12540 5.17154 5.19410 5.26995 5.33692 5.37474 5.46743 5.50770 5.54356 5.67662 5.92023 6.17991 6.24683 6.48700 6.76422 7.23727 8.76505 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.014147 B = 0.007337 C = 0.005234 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.763225 B = 3815.365424 C = 5348.078007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.114 4.114 4 C -0.075 4.075 5 H 0.080 0.920 6 C -0.114 4.114 7 C -0.108 4.108 8 C 0.047 3.953 9 N -0.530 5.530 10 C 0.065 3.935 11 C 0.016 3.984 12 O -0.389 6.389 13 C 0.210 3.790 14 C -0.542 4.542 15 H 0.062 0.938 16 C 0.008 3.992 17 N -0.931 5.931 18 Si 0.977 3.023 19 H -0.275 1.275 20 H -0.265 1.265 21 H -0.265 1.265 22 C 0.060 3.940 23 H 0.043 0.957 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.009 0.991 35 H 0.089 0.911 36 H 0.114 0.886 37 H 0.078 0.922 38 H 0.034 0.966 39 H 0.044 0.956 40 H -0.023 1.023 41 H -0.019 1.019 42 H 0.270 0.730 43 H 0.050 0.950 44 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.486 -15.467 5.097 17.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.152 4.152 3 C -0.152 4.152 4 C -0.094 4.094 5 H 0.098 0.902 6 C -0.152 4.152 7 C -0.146 4.146 8 C -0.081 4.081 9 N -0.253 5.253 10 C -0.063 4.063 11 C -0.063 4.063 12 O -0.309 6.309 13 C 0.135 3.865 14 C -0.579 4.579 15 H 0.080 0.920 16 C -0.191 4.191 17 N -0.571 5.571 18 Si 0.800 3.200 19 H -0.199 1.199 20 H -0.190 1.190 21 H -0.189 1.189 22 C -0.068 4.068 23 H 0.062 0.938 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.087 0.913 27 H 0.090 0.910 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.028 0.972 35 H 0.108 0.892 36 H 0.132 0.868 37 H 0.096 0.904 38 H 0.052 0.948 39 H 0.062 0.938 40 H -0.006 1.006 41 H -0.002 1.002 42 H 0.079 0.921 43 H 0.069 0.931 44 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 5.517 -15.748 5.476 17.562 hybrid contribution -0.950 1.594 -1.153 2.184 sum 4.567 -14.154 4.323 15.488 Atomic orbital electron populations 1.21799 0.95964 1.02036 1.01376 1.21500 0.95741 0.95390 1.02575 1.21583 0.95022 0.97740 1.00872 1.21155 0.94429 0.95207 0.98631 0.90157 1.21662 0.96096 1.01094 0.96348 1.21548 0.95238 0.95075 1.02694 1.22219 1.00241 0.96137 0.89503 1.62248 1.08510 1.21117 1.33376 1.22346 1.00344 0.85973 0.97659 1.23334 0.83177 0.99890 0.99875 1.87999 1.19423 1.65660 1.57833 1.19746 0.93035 0.86983 0.86703 1.21292 0.91979 1.27452 1.17203 0.92010 1.25933 1.04793 0.94180 0.94170 1.70068 1.38118 1.28722 1.20173 0.85319 0.77437 0.78678 0.78573 1.19934 1.18964 1.18923 1.22245 0.87046 0.96344 1.01119 0.93829 0.91299 0.93072 0.91327 0.90986 0.92977 0.94306 0.94523 0.89952 0.90256 0.90211 0.97220 0.89226 0.86772 0.90378 0.94811 0.93801 1.00560 1.00171 0.92077 0.93115 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.32 9.91 71.98 0.71 -2.61 16 2 C -0.11 -2.54 5.69 30.59 0.17 -2.37 16 3 C -0.11 -3.30 4.69 30.59 0.14 -3.16 16 4 C -0.08 -2.15 2.35 -10.74 -0.03 -2.17 16 5 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 6 C -0.11 -2.92 4.98 30.67 0.15 -2.77 16 7 C -0.11 -2.44 6.09 30.65 0.19 -2.25 16 8 C 0.05 1.26 5.06 86.33 0.44 1.70 16 9 N -0.53 -16.10 4.86 -896.38 -4.35 -20.45 16 10 C 0.07 1.95 5.93 86.30 0.51 2.46 16 11 C 0.02 0.60 5.75 71.98 0.41 1.01 16 12 O -0.39 -18.97 6.77 -148.98 -1.01 -19.98 16 13 C 0.21 12.04 5.69 71.23 0.41 12.45 16 14 C -0.54 -32.54 9.43 25.60 0.24 -32.30 16 15 H 0.06 3.67 7.81 -2.91 -0.02 3.64 16 16 C 0.01 0.45 5.46 84.66 0.46 0.91 16 17 N -0.93 -56.87 13.29 21.45 0.28 -56.58 16 18 Si 0.98 44.91 29.54 68.60 2.03 46.93 16 19 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 21 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 22 C 0.06 2.12 3.51 86.32 0.30 2.43 16 23 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 24 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.05 1.11 8.14 -2.38 -0.02 1.09 16 26 H 0.07 1.41 6.63 -2.38 -0.02 1.40 16 27 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.08 1.73 6.70 -2.38 -0.02 1.71 16 32 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 34 H 0.01 0.31 6.65 -2.39 -0.02 0.30 16 35 H 0.09 2.00 8.06 -2.39 -0.02 1.98 16 36 H 0.11 2.63 8.06 -2.39 -0.02 2.61 16 37 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.03 1.30 6.46 -2.39 -0.02 1.29 16 39 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 40 H -0.02 -1.42 8.14 -2.38 -0.02 -1.44 16 41 H -0.02 -1.17 8.14 -2.39 -0.02 -1.19 16 42 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 43 H 0.05 1.93 8.12 -2.39 -0.02 1.91 16 44 H 0.04 1.77 5.58 -2.39 -0.01 1.76 16 Total: -1.00 -65.78 336.68 1.99 -63.80 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 0.92 Total: 12.95 kcal Atomic # 6 Polarization: -30.78 SS G_CDS: 4.12 Total: -26.66 kcal Atomic # 7 Polarization: -72.97 SS G_CDS: -4.07 Total: -77.04 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -1.01 Total: -19.98 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -65.78 1.99 -63.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339018295.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.733 kcal (2) G-P(sol) polarization free energy of solvation -65.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds