Wall clock time and date at job start Mon Mar 30 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47006 * 2 1 4 4 C 1.52998 * 109.47280 * 174.88623 * 3 2 1 5 5 H 1.08996 * 109.46605 * 183.35941 * 4 3 2 6 6 C 1.53042 * 109.46235 * 63.37587 * 4 3 2 7 7 C 1.53117 * 109.27933 * 180.80537 * 6 4 3 8 8 C 1.53121 * 109.15867 * 57.65719 * 7 6 4 9 9 C 1.53038 * 109.27856 * 302.34576 * 8 7 6 10 10 N 1.46840 * 109.52547 * 59.18095 * 9 8 7 11 11 C 1.46902 * 111.00547 * 174.16041 * 10 9 8 12 12 C 1.52996 * 109.46922 * 286.74112 * 11 10 9 13 13 O 1.42901 * 109.47646 * 67.45785 * 12 11 10 14 14 C 1.42899 * 114.00397 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47302 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00119 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00374 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99582 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00168 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47493 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47183 * 120.00222 * 19 17 15 22 22 H 1.48504 * 109.47019 * 240.00093 * 19 17 15 23 23 H 1.09004 * 109.47384 * 300.00401 * 1 2 3 24 24 H 1.09002 * 109.46872 * 60.00196 * 1 2 3 25 25 H 1.09006 * 109.47456 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47041 * 239.99669 * 2 1 3 27 27 H 1.09002 * 109.46872 * 119.99804 * 2 1 3 28 28 H 1.09003 * 109.47148 * 294.88486 * 3 2 1 29 29 H 1.09003 * 109.47560 * 54.88350 * 3 2 1 30 30 H 1.09000 * 109.50343 * 300.75541 * 6 4 3 31 31 H 1.09004 * 109.49648 * 60.86688 * 6 4 3 32 32 H 1.08993 * 109.52477 * 177.56219 * 7 6 4 33 33 H 1.09000 * 109.52454 * 297.75513 * 7 6 4 34 34 H 1.09005 * 109.50149 * 62.28498 * 8 7 6 35 35 H 1.08999 * 109.50186 * 182.40240 * 8 7 6 36 36 H 1.09001 * 109.45971 * 179.19263 * 9 8 7 37 37 H 1.08994 * 109.46354 * 299.17101 * 9 8 7 38 38 H 1.08998 * 109.46722 * 46.73802 * 11 10 9 39 39 H 1.08995 * 109.47327 * 166.73428 * 11 10 9 40 40 H 1.09001 * 109.47284 * 187.46234 * 12 11 10 41 41 H 1.09005 * 109.47077 * 307.46219 * 12 11 10 42 42 H 1.09001 * 109.46764 * 300.00459 * 14 13 12 43 43 H 1.08999 * 109.46535 * 60.00362 * 14 13 12 44 44 H 0.96999 * 119.99688 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4445 0.1286 5 1 3.9226 2.4722 0.1886 6 6 4.1803 0.7605 -1.0942 7 6 5.7047 0.7469 -0.9517 8 6 6.0817 0.0281 0.3467 9 6 5.4108 0.7333 1.5277 10 7 3.9540 0.7191 1.3446 11 6 3.2696 1.2642 2.5246 12 6 3.3423 0.2518 3.6694 13 8 4.6968 0.1228 4.1060 14 6 4.8759 -0.8039 5.1790 15 6 6.3337 -0.8593 5.5568 16 1 7.0516 -0.2477 5.0305 17 6 6.7509 -1.6900 6.5751 18 7 5.8767 -2.4345 7.2163 19 14 8.5578 -1.7582 7.0438 20 1 9.3295 -0.8321 6.1766 21 1 8.7163 -1.3547 8.4641 22 1 9.0643 -3.1424 6.8630 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7534 1.9292 -0.9323 29 1 1.6037 1.9822 0.8406 30 1 3.8119 -0.2631 -1.1626 31 1 3.9038 1.3082 -1.9952 32 1 6.1452 0.2223 -1.7995 33 1 6.0770 1.7709 -0.9224 34 1 5.7433 -1.0071 0.3010 35 1 7.1638 0.0525 0.4752 36 1 5.6657 0.2153 2.4523 37 1 5.7600 1.7644 1.5810 38 1 3.7537 2.1921 2.8290 39 1 2.2260 1.4622 2.2803 40 1 2.7244 0.5960 4.4987 41 1 2.9788 -0.7156 3.3225 42 1 4.2899 -0.4811 6.0395 43 1 4.5441 -1.7931 4.8638 44 1 6.1702 -3.0191 7.9324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339088552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:38 Heat of formation + Delta-G solvation = -69.124969 kcal Electronic energy + Delta-G solvation = -20164.576624 eV Core-core repulsion = 17308.934696 eV Total energy + Delta-G solvation = -2855.641928 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.45093 -36.63666 -34.73343 -33.48862 -32.52426 -30.68243 -28.86487 -26.86459 -26.30035 -23.63871 -22.51674 -22.22211 -21.33916 -20.51683 -18.90768 -16.40076 -16.07966 -15.75204 -15.16334 -14.64292 -14.56654 -14.27519 -14.16637 -13.97613 -13.37009 -13.29349 -12.89700 -12.72535 -12.03754 -11.95834 -11.72217 -11.56033 -11.38182 -11.28043 -11.20471 -10.87099 -10.77652 -10.74867 -10.62939 -10.48383 -10.26700 -10.17208 -9.87798 -9.66398 -9.03528 -8.74279 -8.10884 -7.88627 -6.09099 -4.10520 3.29852 3.36488 3.42472 4.16351 4.36541 4.77430 4.85791 5.00517 5.03191 5.15023 5.21462 5.27670 5.33152 5.37640 5.54304 5.58353 5.70376 5.76900 5.79494 5.80759 5.87141 5.88182 5.97982 6.04278 6.09626 6.13502 6.17291 6.19835 6.26762 6.35399 6.39791 6.41894 6.59602 6.65399 6.94447 7.17602 7.46216 7.51592 7.57651 7.81262 8.18717 8.61528 9.03531 9.54423 11.02493 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025111 B = 0.005001 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.798105 B = 5597.352588 C = 6346.274790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.115 4.115 4 C 0.081 3.919 5 H 0.033 0.967 6 C -0.109 4.109 7 C -0.121 4.121 8 C -0.115 4.115 9 C 0.044 3.956 10 N -0.522 5.522 11 C 0.053 3.947 12 C 0.068 3.932 13 O -0.392 6.392 14 C 0.194 3.806 15 C -0.512 4.512 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.905 3.095 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.283 1.283 23 H 0.050 0.950 24 H 0.046 0.954 25 H 0.051 0.949 26 H 0.059 0.941 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.053 0.947 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.122 0.878 37 H 0.021 0.979 38 H 0.036 0.964 39 H 0.083 0.917 40 H 0.037 0.963 41 H 0.045 0.955 42 H 0.003 0.997 43 H 0.005 0.995 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.124 6.758 -15.765 18.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.153 4.153 4 C -0.027 4.027 5 H 0.050 0.950 6 C -0.147 4.147 7 C -0.159 4.159 8 C -0.153 4.153 9 C -0.083 4.083 10 N -0.247 5.247 11 C -0.074 4.074 12 C -0.010 4.010 13 O -0.312 6.312 14 C 0.120 3.880 15 C -0.550 4.550 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.733 3.267 20 H -0.195 1.195 21 H -0.209 1.209 22 H -0.209 1.209 23 H 0.069 0.931 24 H 0.065 0.935 25 H 0.070 0.930 26 H 0.077 0.923 27 H 0.099 0.901 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.140 0.860 37 H 0.039 0.961 38 H 0.054 0.946 39 H 0.101 0.899 40 H 0.055 0.945 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.023 0.977 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.125 6.247 -15.754 18.384 hybrid contribution 0.892 0.618 0.591 1.236 sum -6.233 6.864 -15.163 17.773 Atomic orbital electron populations 1.21812 0.96822 1.01284 1.01107 1.21489 0.94359 0.96547 1.03330 1.21739 0.94523 0.97792 1.01209 1.21624 0.94727 0.95030 0.91334 0.94953 1.21625 0.95298 1.01567 0.96197 1.21606 0.95901 1.00238 0.98163 1.21582 0.99599 1.00265 0.93891 1.22513 0.85828 0.98904 1.01049 1.61941 1.07837 1.53713 1.01255 1.22262 0.98806 0.96276 0.90082 1.22265 0.86567 0.97939 0.94225 1.87769 1.23426 1.65607 1.54395 1.20177 0.97187 0.87032 0.83573 1.21089 0.92511 1.24158 1.17276 0.91623 1.24939 0.98365 0.95252 0.95916 1.69977 1.33919 1.26452 1.23405 0.86322 0.84257 0.77905 0.78252 1.19515 1.20913 1.20865 0.93058 0.93454 0.93008 0.92279 0.90091 0.92208 0.91943 0.90890 0.92381 0.92415 0.92815 0.91290 0.91922 0.86007 0.96122 0.94562 0.89898 0.94459 0.93644 0.97950 0.97688 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 37.16 0.37 -1.10 16 2 C -0.12 -1.32 5.33 -26.73 -0.14 -1.46 16 3 C -0.12 -1.23 4.41 -26.73 -0.12 -1.35 16 4 C 0.08 1.02 2.13 -67.72 -0.14 0.87 16 5 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 6 C -0.11 -1.25 5.11 -26.65 -0.14 -1.38 16 7 C -0.12 -1.45 6.00 -26.61 -0.16 -1.61 16 8 C -0.12 -1.67 6.09 -26.65 -0.16 -1.83 16 9 C 0.04 0.74 5.18 -3.84 -0.02 0.72 16 10 N -0.52 -7.91 3.51 -226.69 -0.80 -8.70 16 11 C 0.05 0.83 5.00 -3.82 -0.02 0.81 16 12 C 0.07 1.27 6.23 37.16 0.23 1.50 16 13 O -0.39 -9.20 7.32 -35.23 -0.26 -9.46 16 14 C 0.19 5.31 5.69 36.00 0.20 5.51 16 15 C -0.51 -14.95 9.43 -34.44 -0.32 -15.27 16 16 H 0.07 1.90 7.81 -52.48 -0.41 1.49 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 19 Si 0.91 21.85 29.54 -169.99 -5.02 16.83 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 24 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.06 0.64 6.76 -51.93 -0.35 0.29 16 27 H 0.08 1.07 7.06 -51.93 -0.37 0.70 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.67 6.16 -51.93 -0.32 0.35 16 30 H 0.07 0.87 6.60 -51.93 -0.34 0.53 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 36 H 0.12 2.52 5.11 -51.93 -0.27 2.25 16 37 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 38 H 0.04 0.59 8.03 -51.93 -0.42 0.17 16 39 H 0.08 1.09 5.36 -51.93 -0.28 0.81 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.00 0.08 8.14 -51.93 -0.42 -0.35 16 43 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 334.31 15.07 5.04 5.04 Total: -1.00 -29.66 334.31 -9.05 -38.71 By element: Atomic # 1 Polarization: 5.10 SS G_CDS: -8.23 Total: -3.13 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -0.52 Total: -13.07 kcal Atomic # 7 Polarization: -34.86 SS G_CDS: -0.06 Total: -34.92 kcal Atomic # 8 Polarization: -9.20 SS G_CDS: -0.26 Total: -9.46 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -29.66 -9.05 -38.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339088552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.419 kcal (2) G-P(sol) polarization free energy of solvation -29.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds