Wall clock time and date at job start Mon Mar 30 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47006 * 2 1 4 4 C 1.52998 * 109.47280 * 174.88623 * 3 2 1 5 5 H 1.08996 * 109.46605 * 183.35941 * 4 3 2 6 6 C 1.53042 * 109.46235 * 63.37587 * 4 3 2 7 7 C 1.53117 * 109.27933 * 180.80537 * 6 4 3 8 8 C 1.53121 * 109.15867 * 57.65719 * 7 6 4 9 9 C 1.53038 * 109.27856 * 302.34576 * 8 7 6 10 10 N 1.46840 * 109.52547 * 59.18095 * 9 8 7 11 11 C 1.46902 * 111.00547 * 174.16041 * 10 9 8 12 12 C 1.52996 * 109.46922 * 286.74112 * 11 10 9 13 13 O 1.42901 * 109.47646 * 67.45785 * 12 11 10 14 14 C 1.42899 * 114.00397 * 179.97438 * 13 12 11 15 15 C 1.50695 * 109.47302 * 180.02562 * 14 13 12 16 16 H 1.08005 * 120.00119 * 0.02562 * 15 14 13 17 17 C 1.37877 * 120.00374 * 179.97438 * 15 14 13 18 18 N 1.31519 * 119.99582 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00168 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47493 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47183 * 120.00222 * 19 17 15 22 22 H 1.48504 * 109.47019 * 240.00093 * 19 17 15 23 23 H 1.09004 * 109.47384 * 300.00401 * 1 2 3 24 24 H 1.09002 * 109.46872 * 60.00196 * 1 2 3 25 25 H 1.09006 * 109.47456 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47041 * 239.99669 * 2 1 3 27 27 H 1.09002 * 109.46872 * 119.99804 * 2 1 3 28 28 H 1.09003 * 109.47148 * 294.88486 * 3 2 1 29 29 H 1.09003 * 109.47560 * 54.88350 * 3 2 1 30 30 H 1.09000 * 109.50343 * 300.75541 * 6 4 3 31 31 H 1.09004 * 109.49648 * 60.86688 * 6 4 3 32 32 H 1.08993 * 109.52477 * 177.56219 * 7 6 4 33 33 H 1.09000 * 109.52454 * 297.75513 * 7 6 4 34 34 H 1.09005 * 109.50149 * 62.28498 * 8 7 6 35 35 H 1.08999 * 109.50186 * 182.40240 * 8 7 6 36 36 H 1.09001 * 109.45971 * 179.19263 * 9 8 7 37 37 H 1.08994 * 109.46354 * 299.17101 * 9 8 7 38 38 H 1.08998 * 109.46722 * 46.73802 * 11 10 9 39 39 H 1.08995 * 109.47327 * 166.73428 * 11 10 9 40 40 H 1.09001 * 109.47284 * 187.46234 * 12 11 10 41 41 H 1.09005 * 109.47077 * 307.46219 * 12 11 10 42 42 H 1.09001 * 109.46764 * 300.00459 * 14 13 12 43 43 H 1.08999 * 109.46535 * 60.00362 * 14 13 12 44 44 H 0.96999 * 119.99688 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5645 1.4445 0.1286 5 1 3.9226 2.4722 0.1886 6 6 4.1803 0.7605 -1.0942 7 6 5.7047 0.7469 -0.9517 8 6 6.0817 0.0281 0.3467 9 6 5.4108 0.7333 1.5277 10 7 3.9540 0.7191 1.3446 11 6 3.2696 1.2642 2.5246 12 6 3.3423 0.2518 3.6694 13 8 4.6968 0.1228 4.1060 14 6 4.8759 -0.8039 5.1790 15 6 6.3337 -0.8593 5.5568 16 1 7.0516 -0.2477 5.0305 17 6 6.7509 -1.6900 6.5751 18 7 5.8767 -2.4345 7.2163 19 14 8.5578 -1.7582 7.0438 20 1 9.3295 -0.8321 6.1766 21 1 8.7163 -1.3547 8.4641 22 1 9.0643 -3.1424 6.8630 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 1.7534 1.9292 -0.9323 29 1 1.6037 1.9822 0.8406 30 1 3.8119 -0.2631 -1.1626 31 1 3.9038 1.3082 -1.9952 32 1 6.1452 0.2223 -1.7995 33 1 6.0770 1.7709 -0.9224 34 1 5.7433 -1.0071 0.3010 35 1 7.1638 0.0525 0.4752 36 1 5.6657 0.2153 2.4523 37 1 5.7600 1.7644 1.5810 38 1 3.7537 2.1921 2.8290 39 1 2.2260 1.4622 2.2803 40 1 2.7244 0.5960 4.4987 41 1 2.9788 -0.7156 3.3225 42 1 4.2899 -0.4811 6.0395 43 1 4.5441 -1.7931 4.8638 44 1 6.1702 -3.0191 7.9324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339088552.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:38 Heat of formation + Delta-G solvation = -85.897835 kcal Electronic energy + Delta-G solvation = -20165.303950 eV Core-core repulsion = 17308.934696 eV Total energy + Delta-G solvation = -2856.369254 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 255.194 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.60402 -38.42288 -35.69188 -35.13472 -34.33355 -31.68429 -30.44863 -28.81176 -27.30211 -25.03455 -24.29218 -23.45379 -22.59982 -21.62984 -19.96234 -18.61861 -17.56374 -17.22775 -16.63251 -16.26067 -15.90033 -15.57731 -15.50133 -15.22111 -14.63404 -14.38898 -14.28833 -14.05774 -13.62065 -13.19234 -13.02984 -12.88055 -12.73627 -12.64056 -12.56164 -12.41448 -12.34435 -12.16876 -12.00287 -11.64003 -11.55998 -11.31295 -11.19034 -11.02920 -10.89645 -10.73227 -10.10104 -9.12396 -8.31595 -6.43463 1.39293 1.40601 1.55105 2.34481 2.97283 3.02451 3.22796 3.85771 3.92655 4.01757 4.11157 4.20900 4.32124 4.37450 4.41657 4.51273 4.52891 4.57722 4.67972 4.74749 4.76745 4.83735 4.86903 4.93160 4.99210 5.04882 5.08143 5.12718 5.14869 5.20641 5.21690 5.28998 5.37932 5.48986 5.52761 5.55592 5.59762 5.68101 5.97985 6.23124 6.38930 6.55682 6.84488 7.28575 8.81103 Molecular weight = 255.19amu Principal moments of inertia in cm(-1) A = 0.025111 B = 0.005001 C = 0.004411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.798105 B = 5597.352588 C = 6346.274790 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C -0.110 4.110 4 C 0.079 3.921 5 H 0.032 0.968 6 C -0.106 4.106 7 C -0.116 4.116 8 C -0.113 4.113 9 C 0.048 3.952 10 N -0.529 5.529 11 C 0.064 3.936 12 C 0.060 3.940 13 O -0.397 6.397 14 C 0.210 3.790 15 C -0.542 4.542 16 H 0.061 0.939 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.981 3.019 20 H -0.264 1.264 21 H -0.272 1.272 22 H -0.272 1.272 23 H 0.050 0.950 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.061 0.939 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.063 0.937 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.062 0.938 36 H 0.078 0.922 37 H 0.016 0.984 38 H 0.029 0.971 39 H 0.113 0.887 40 H 0.044 0.956 41 H 0.040 0.960 42 H -0.018 1.018 43 H -0.019 1.019 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.989 7.666 -17.428 20.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C -0.147 4.147 4 C -0.029 4.029 5 H 0.050 0.950 6 C -0.144 4.144 7 C -0.153 4.153 8 C -0.151 4.151 9 C -0.080 4.080 10 N -0.254 5.254 11 C -0.064 4.064 12 C -0.017 4.017 13 O -0.317 6.317 14 C 0.135 3.865 15 C -0.580 4.580 16 H 0.079 0.921 17 C -0.192 4.192 18 N -0.571 5.571 19 Si 0.804 3.196 20 H -0.188 1.188 21 H -0.197 1.197 22 H -0.197 1.197 23 H 0.069 0.931 24 H 0.080 0.920 25 H 0.069 0.931 26 H 0.080 0.920 27 H 0.072 0.928 28 H 0.101 0.899 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.034 0.966 38 H 0.048 0.952 39 H 0.131 0.869 40 H 0.063 0.937 41 H 0.059 0.941 42 H 0.000 1.000 43 H -0.001 1.001 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.010 7.165 -17.436 20.112 hybrid contribution 0.767 0.334 1.077 1.364 sum -6.243 7.500 -16.359 19.048 Atomic orbital electron populations 1.21781 0.95625 1.01510 1.01815 1.21429 0.95386 0.96531 1.02122 1.21725 0.92878 0.97666 1.02453 1.21763 0.96214 0.94665 0.90219 0.95002 1.21637 0.94619 1.01555 0.96571 1.21572 0.96585 1.00249 0.96930 1.21545 0.99350 0.99637 0.94595 1.22313 0.87334 0.98178 1.00170 1.61921 1.06681 1.54609 1.02190 1.22203 1.00558 0.94485 0.89156 1.22563 0.84413 0.98945 0.95760 1.87806 1.26394 1.64403 1.53070 1.19770 0.96331 0.86550 0.83845 1.21387 0.93268 1.25071 1.18256 0.92087 1.25939 1.03666 0.94247 0.95323 1.70085 1.36427 1.26804 1.23772 0.85165 0.77750 0.78413 0.78260 1.18816 1.19710 1.19723 0.93073 0.91985 0.93112 0.92036 0.92812 0.89923 0.91820 0.91409 0.89774 0.90649 0.92337 0.92496 0.91932 0.90356 0.96573 0.95247 0.86924 0.93737 0.94147 0.99998 1.00081 0.92127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.91 71.98 0.71 -1.85 16 2 C -0.12 -2.37 5.33 30.59 0.16 -2.20 16 3 C -0.11 -2.05 4.41 30.59 0.14 -1.92 16 4 C 0.08 1.82 2.13 44.94 0.10 1.92 16 5 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 6 C -0.11 -2.15 5.11 30.65 0.16 -2.00 16 7 C -0.12 -2.54 6.00 30.67 0.18 -2.35 16 8 C -0.11 -3.27 6.09 30.65 0.19 -3.08 16 9 C 0.05 1.64 5.18 86.33 0.45 2.08 16 10 N -0.53 -15.91 3.51 -871.12 -3.06 -18.97 16 11 C 0.06 1.96 5.00 86.30 0.43 2.39 16 12 C 0.06 2.34 6.23 71.98 0.45 2.79 16 13 O -0.40 -19.53 7.32 -148.98 -1.09 -20.63 16 14 C 0.21 12.04 5.69 71.23 0.41 12.45 16 15 C -0.54 -32.65 9.43 25.60 0.24 -32.41 16 16 H 0.06 3.64 7.81 -2.91 -0.02 3.61 16 17 C 0.01 0.38 5.46 84.65 0.46 0.84 16 18 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 19 Si 0.98 44.93 29.54 68.60 2.03 46.96 16 20 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 23 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 24 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 26 H 0.06 1.21 6.76 -2.39 -0.02 1.19 16 27 H 0.05 1.39 7.06 -2.39 -0.02 1.37 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.18 6.16 -2.39 -0.01 1.17 16 30 H 0.07 1.47 6.60 -2.39 -0.02 1.46 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.06 1.75 8.14 -2.38 -0.02 1.73 16 35 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 36 H 0.08 3.41 5.11 -2.39 -0.01 3.40 16 37 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.03 0.95 8.03 -2.39 -0.02 0.93 16 39 H 0.11 2.80 5.36 -2.39 -0.01 2.79 16 40 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 42 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 43 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 44 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -65.32 334.31 3.16 -62.16 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.93 Total: 10.31 kcal Atomic # 6 Polarization: -27.40 SS G_CDS: 4.07 Total: -23.33 kcal Atomic # 7 Polarization: -72.70 SS G_CDS: -2.78 Total: -75.48 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -1.09 Total: -20.63 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -65.32 3.16 -62.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339088552.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.735 kcal (2) G-P(sol) polarization free energy of solvation -65.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds